Data summary for DCD012358DT from sequencing run DCD002220SQ

BAM

GRCz11/danRer11

DANIO-CODE_RNA-Seq_ver_1.2|STAR_2.6.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --outFilterMismatchNmax 33 --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --quantMode GeneCounts --seedSearchStartLmax 12 --outSAMtype BAM SortedByCoordinate --runThreadN 16 --limitBAMsortRAM 300000000000 --limitOutSJcollapsed 2000000 --readFilesIn RNA-seq_Busch-Nentwich_Lab_0003AS.DCD002220SQ.USERdanio-user.R1.fastq RNA-seq_Busch-Nentwich_Lab_0003AS.DCD002220SQ.USERdanio-user.R2.fastq --genomeLoad NoSharedMemory --outFilterType BySJout --outWigType bedGraph --outWigStrand Stranded

freeze-03

ak.mukarram

Oct. 21, 2018, 4:27 p.m.

Nov. 27, 2018, 3:08 a.m.

This data is part of series

  • DCD000324SR titled Baseline expression from transcriptional profiling of zebrafish developmental stages