Data summary for DCD013585DT from sequencing run DCD000872SQ

TSV

GRCz11/danRer11

DANIO-CODE_RNA-Seq_ver_1.2|STAR_2.6.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --outFilterMismatchNmax 33 --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --quantMode GeneCounts --seedSearchStartLmax 12 --outSAMtype BAM SortedByCoordinate --runThreadN 16 --limitBAMsortRAM 300000000000 --limitOutSJcollapsed 2000000 --readFilesIn RNA-seq_Sauka-Spengler_Lab_0028AS.DCD000872SQ.USERvanessachong.R1.fastq RNA-seq_Sauka-Spengler_Lab_0028AS.DCD000872SQ.USERvanessachong.R2.fastq --genomeLoad NoSharedMemory --outFilterType BySJout --outWigType bedGraph --outWigStrand Unstranded

freeze-03

ak.mukarram

Oct. 22, 2018, 1:17 p.m.

Nov. 20, 2018, 7:44 a.m.

This data is part of series

  • DCD000177SR titled The Biotagging toolkit for analysis of specific cell populations reveals gene regulatory logic encoded in the nuclear transcriptome