Data summary for DCD014365DT from sequencing run DCD000671SQ

BAM

GRCz11/danRer11

DANIO-CODE_RNA-Seq_ver_1.2|STAR_2.6.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --outFilterMismatchNmax 33 --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --quantMode GeneCounts --seedSearchStartLmax 12 --outSAMtype BAM SortedByCoordinate --runThreadN 16 --limitBAMsortRAM 300000000000 --limitOutSJcollapsed 2000000 --readFilesIn RNA-seq_Giraldez_Lab_0001AS.DCD000671SQ.USERgiraldezlab.R1.fastq --genomeLoad NoSharedMemory --outFilterType BySJout --outWigType bedGraph --outWigStrand Stranded

freeze-03

ak.mukarram

Oct. 22, 2018, 6:30 p.m.

Nov. 20, 2018, 4:12 a.m.

This data is part of series

  • DCD000141SR titled Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition.