Data summary for DCD003336DT from sequencing run DCD000711SQ

BEDGRAPH

GRCz10/danRer10

DANIO-CODE_RNA-Seq_ver_1.0|STAR_2.5.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --readFilesIn RNA-seq_Giraldez_Lab_0001AS.DCD000711SQ.USERgiraldezlab.R1.fastq --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --genomeLoad NoSharedMemory --seedSearchStartLmax 12 --outWigStrand Stranded --outSAMtype BAM SortedByCoordinate --runThreadN 16 --outFilterMismatchNmax 33 --quantMode GeneCounts --outFilterType BySJout --outWigType bedGraph

freeze-01, freeze-02, freeze-03

danio-user

March 25, 2017, 8:10 a.m.

Nov. 20, 2018, 4:49 a.m.

This data is part of series

  • DCD000141SR titled Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition.