Data summary for DCD003915DT from sequencing run DCD001164SQ

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GRCz10/danRer10

DANIO-CODE_RNA-Seq_ver_1.0|STAR_2.5.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --readFilesIn RNA-seq_Liu_Lab_0001AS.DCD001164SQ.USERzhuwei.R1.fastq RNA-seq_Liu_Lab_0001AS.DCD001164SQ.USERzhuwei.R2.fastq --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --genomeLoad NoSharedMemory --seedSearchStartLmax 12 --outWigStrand Stranded --outSAMtype BAM SortedByCoordinate --runThreadN 16 --outFilterMismatchNmax 33 --quantMode GeneCounts --outFilterType BySJout --outWigType bedGraph

freeze-01, freeze-02, freeze-03

danio-user

March 25, 2017, 9:56 a.m.

Nov. 23, 2018, 7:05 a.m.

This data is part of series

  • DCD000227SR titled DNA methylation reprogramming during early zebrafish embryo development