Data summary for DCD004784DT from sequencing run DCD000872SQ



DANIO-CODE_RNA-Seq_ver_1.0|STAR_2.5.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --readFilesIn RNA-seq_Sauka-Spengler_Lab_0028AS.DCD000872SQ.USERvanessachong.R1.fastq RNA-seq_Sauka-Spengler_Lab_0028AS.DCD000872SQ.USERvanessachong.R2.fastq --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --genomeLoad NoSharedMemory --seedSearchStartLmax 12 --outWigStrand Stranded --outSAMtype BAM SortedByCoordinate --runThreadN 16 --outFilterMismatchNmax 33 --quantMode GeneCounts --outFilterType BySJout --outWigType bedGraph

freeze-01, freeze-02, freeze-03


June 8, 2017, 8:32 a.m.

Nov. 20, 2018, 7:43 a.m.

This data is part of series

  • DCD000177SR titled The Biotagging toolkit for analysis of specific cell populations reveals gene regulatory logic encoded in the nuclear transcriptome