Series Summary for DCD000136SR

ChIP-seq analysis of H3K4me3, H3K4me1, H3K27ac and H3K27me3 and DNA methylation (MethylCap-seq) profling at different developmental time points of zebrafish embryogenesis

Survey

10.1101/gr.134833.111 , 10.1101/gr.139725.112 , 10.1016/j.gdata.2015.07.020

GSE32483, GSE35050, GSE70847

ChIP-seq analysis of H3K4me3 and H3K27ac at six developmental time points (dome, shield, 80% epiboly, 8-somites, 24hpf and 48pf), H3K4me1 at four time points (dome, 80% epiboly, 24hpf and 48pf) (GSE32483 + other data) and genome-wide DNA methylation (MethylCap-seq) and H3K27me3 (ChIP-seq) maps for three stages (dome, 24hpf and 48hpf) of zebrafish (Danio rerio) embryogenesis (GSE35050, GSE70847)

True

panosfirbas

May 6, 2016, 9:19 a.m.

Oct. 31, 2018, 2:02 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background
DCD006173BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU
Applied Assay ID Biosample Replicate Assay
DCD000819AA DCD012274BR ChIP-seq_Skarmeta_Lab_H3K27me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000630SQ DCD000824TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000322DT: FASTQ
DCD005974DT: LOG GRCz10/danRer10
DCD005975DT: BAM GRCz10/danRer10
DCD005976DT: LOG GRCz10/danRer10
DCD005977DT: LOG GRCz10/danRer10
DCD005978DT: LOG GRCz10/danRer10
DCD005979DT: LOG GRCz10/danRer10
DCD005980DT: PDF GRCz10/danRer10
DCD005982DT: BAM GRCz10/danRer10
DCD005983DT: BAM GRCz10/danRer10
DCD005984DT: BAM GRCz10/danRer10
DCD005989DT: BAM GRCz10/danRer10
DCD009084DT: BIGWIG GRCz10/danRer10
DCD016230DT: BIGNARROWPEAK GRCz11/danRer11
DCD016231DT: BIGNARROWPEAK GRCz11/danRer11
DCD016232DT: BED GRCz11/danRer11
DCD016234DT: BAM GRCz11/danRer11
DCD016238DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000829AA DCD012274BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000640SQ DCD000834TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000339DT: FASTQ
DCD006158DT: LOG GRCz10/danRer10
DCD006161DT: LOG GRCz10/danRer10
DCD006162DT: BAM GRCz10/danRer10
DCD006163DT: LOG GRCz10/danRer10
DCD006164DT: LOG GRCz10/danRer10
DCD006165DT: PDF GRCz10/danRer10
DCD006166DT: LOG GRCz10/danRer10
DCD006169DT: BAM GRCz10/danRer10
DCD006170DT: BAM GRCz10/danRer10
DCD006171DT: BAM GRCz10/danRer10
DCD006174DT: BAM GRCz10/danRer10
DCD008979DT: BIGNARROWPEAK GRCz10/danRer10
DCD009094DT: BIGWIG GRCz10/danRer10
DCD016144DT: BED GRCz11/danRer11
DCD016147DT: BAM GRCz11/danRer11
DCD016149DT: BIGNARROWPEAK GRCz11/danRer11
DCD016150DT: BIGNARROWPEAK GRCz11/danRer11
DCD016152DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000839AA DCD012274BR ChIP-seq_Skarmeta_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000650SQ DCD000844TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000325DT: FASTQ
DCD006002DT: LOG GRCz10/danRer10
DCD006005DT: LOG GRCz10/danRer10
DCD006007DT: BAM GRCz10/danRer10
DCD006008DT: LOG GRCz10/danRer10
DCD006009DT: LOG GRCz10/danRer10
DCD006010DT: BAM GRCz10/danRer10
DCD006011DT: PDF GRCz10/danRer10
DCD006015DT: LOG GRCz10/danRer10
DCD006017DT: BAM GRCz10/danRer10
DCD006019DT: BAM GRCz10/danRer10
DCD006021DT: BAM GRCz10/danRer10
DCD009089DT: BIGWIG GRCz10/danRer10
DCD016155DT: BIGNARROWPEAK GRCz11/danRer11
DCD016156DT: BIGNARROWPEAK GRCz11/danRer11
DCD016157DT: BED GRCz11/danRer11
DCD016159DT: BAM GRCz11/danRer11
DCD016163DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000840AA DCD012274BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000651SQ DCD000845TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000329DT: FASTQ
DCD006047DT: LOG GRCz10/danRer10
DCD006049DT: LOG GRCz10/danRer10
DCD006051DT: BAM GRCz10/danRer10
DCD006053DT: LOG GRCz10/danRer10
DCD006054DT: LOG GRCz10/danRer10
DCD006055DT: PDF GRCz10/danRer10
DCD006056DT: LOG GRCz10/danRer10
DCD006058DT: BAM GRCz10/danRer10
DCD006062DT: BAM GRCz10/danRer10
DCD006065DT: BAM GRCz10/danRer10
DCD006067DT: BAM GRCz10/danRer10
DCD008976DT: BIGNARROWPEAK GRCz10/danRer10
DCD009085DT: BIGWIG GRCz10/danRer10
DCD016255DT: BED GRCz11/danRer11
DCD016257DT: BAM GRCz11/danRer11
DCD016258DT: BIGNARROWPEAK GRCz11/danRer11
DCD016259DT: BIGNARROWPEAK GRCz11/danRer11
DCD016262DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001400AA DCD012902BR MethylCap-seq_Skarmeta_Lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001263SQ DCD001422TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2500 01/01/2013
DCD000863DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006174BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU
Applied Assay ID Biosample Replicate Assay
DCD000830AA DCD012264BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000641SQ DCD000835TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000342DT: FASTQ
DCD006191DT: LOG GRCz10/danRer10
DCD006193DT: LOG GRCz10/danRer10
DCD006194DT: BAM GRCz10/danRer10
DCD006195DT: LOG GRCz10/danRer10
DCD006197DT: LOG GRCz10/danRer10
DCD006198DT: PDF GRCz10/danRer10
DCD006199DT: LOG GRCz10/danRer10
DCD006203DT: BAM GRCz10/danRer10
DCD006207DT: BAM GRCz10/danRer10
DCD006210DT: BAM GRCz10/danRer10
DCD006216DT: BAM GRCz10/danRer10
DCD008980DT: BIGNARROWPEAK GRCz10/danRer10
DCD009099DT: BIGWIG GRCz10/danRer10
DCD016096DT: BAM GRCz11/danRer11
DCD016097DT: BIGNARROWPEAK GRCz11/danRer11
DCD016098DT: BIGNARROWPEAK GRCz11/danRer11
DCD016099DT: BED GRCz11/danRer11
DCD016101DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000843AA DCD012264BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000654SQ DCD000848TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000332DT: FASTQ
DCD006081DT: LOG GRCz10/danRer10
DCD006082DT: LOG GRCz10/danRer10
DCD006083DT: BAM GRCz10/danRer10
DCD006087DT: LOG GRCz10/danRer10
DCD006088DT: LOG GRCz10/danRer10
DCD006089DT: PDF GRCz10/danRer10
DCD006090DT: LOG GRCz10/danRer10
DCD006092DT: BAM GRCz10/danRer10
DCD006095DT: BAM GRCz10/danRer10
DCD006097DT: BAM GRCz10/danRer10
DCD006103DT: BAM GRCz10/danRer10
DCD008978DT: BIGNARROWPEAK GRCz10/danRer10
DCD009087DT: BIGWIG GRCz10/danRer10
DCD016160DT: BIGNARROWPEAK GRCz11/danRer11
DCD016161DT: BIGNARROWPEAK GRCz11/danRer11
DCD016162DT: BED GRCz11/danRer11
DCD016164DT: BIGWIG GRCz11/danRer11
DCD016165DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000823AA DCD012267BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000634SQ DCD000828TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000333DT: FASTQ
DCD006091DT: LOG GRCz10/danRer10
DCD006093DT: LOG GRCz10/danRer10
DCD006094DT: BAM GRCz10/danRer10
DCD006096DT: BAM GRCz10/danRer10
DCD006098DT: LOG GRCz10/danRer10
DCD006099DT: LOG GRCz10/danRer10
DCD006100DT: PDF GRCz10/danRer10
DCD006101DT: LOG GRCz10/danRer10
DCD006106DT: BAM GRCz10/danRer10
DCD006109DT: BAM GRCz10/danRer10
DCD006110DT: BAM GRCz10/danRer10
DCD008971DT: BIGNARROWPEAK GRCz10/danRer10
DCD009079DT: BIGWIG GRCz10/danRer10
DCD016166DT: BIGNARROWPEAK GRCz11/danRer11
DCD016167DT: BIGNARROWPEAK GRCz11/danRer11
DCD016168DT: BED GRCz11/danRer11
DCD016169DT: BIGWIG GRCz11/danRer11
DCD016171DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000833AA DCD012267BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000644SQ DCD000838TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000343DT: FASTQ
DCD006200DT: LOG GRCz10/danRer10
DCD006202DT: BAM GRCz10/danRer10
DCD006204DT: BAM GRCz10/danRer10
DCD006205DT: LOG GRCz10/danRer10
DCD006206DT: LOG GRCz10/danRer10
DCD006208DT: BAM GRCz10/danRer10
DCD006209DT: LOG GRCz10/danRer10
DCD006211DT: LOG GRCz10/danRer10
DCD006212DT: PDF GRCz10/danRer10
DCD006219DT: BAM GRCz10/danRer10
DCD006221DT: BAM GRCz10/danRer10
DCD008986DT: BIGNARROWPEAK GRCz10/danRer10
DCD009095DT: BIGWIG GRCz10/danRer10
DCD016100DT: BED GRCz11/danRer11
DCD016102DT: BAM GRCz11/danRer11
DCD016103DT: BIGNARROWPEAK GRCz11/danRer11
DCD016104DT: BIGNARROWPEAK GRCz11/danRer11
DCD016107DT: BIGWIG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006175BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU
Applied Assay ID Biosample Replicate Assay
DCD000821AA DCD012265BR ChIP-seq_Skarmeta_Lab_H3K27me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000632SQ DCD000826TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000323DT: FASTQ
DCD005981DT: LOG GRCz10/danRer10
DCD005985DT: LOG GRCz10/danRer10
DCD005986DT: BAM GRCz10/danRer10
DCD005987DT: LOG GRCz10/danRer10
DCD005988DT: LOG GRCz10/danRer10
DCD005990DT: PDF GRCz10/danRer10
DCD005991DT: BAM GRCz10/danRer10
DCD005992DT: LOG GRCz10/danRer10
DCD005996DT: BAM GRCz10/danRer10
DCD005999DT: BAM GRCz10/danRer10
DCD006003DT: BAM GRCz10/danRer10
DCD009093DT: BIGWIG GRCz10/danRer10
DCD016148DT: BIGNARROWPEAK GRCz11/danRer11
DCD016151DT: BED GRCz11/danRer11
DCD016153DT: BAM GRCz11/danRer11
DCD016154DT: BIGNARROWPEAK GRCz11/danRer11
DCD016158DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000831AA DCD012265BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000642SQ DCD000836TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000341DT: FASTQ
DCD006179DT: LOG GRCz10/danRer10
DCD006181DT: BAM GRCz10/danRer10
DCD006182DT: BAM GRCz10/danRer10
DCD006183DT: LOG GRCz10/danRer10
DCD006184DT: LOG GRCz10/danRer10
DCD006187DT: LOG GRCz10/danRer10
DCD006188DT: PDF GRCz10/danRer10
DCD006189DT: LOG GRCz10/danRer10
DCD006190DT: BAM GRCz10/danRer10
DCD006196DT: BAM GRCz10/danRer10
DCD006201DT: BAM GRCz10/danRer10
DCD008983DT: BIGNARROWPEAK GRCz10/danRer10
DCD009097DT: BIGWIG GRCz10/danRer10
DCD016190DT: BIGNARROWPEAK GRCz11/danRer11
DCD016191DT: BED GRCz11/danRer11
DCD016193DT: BAM GRCz11/danRer11
DCD016195DT: BIGNARROWPEAK GRCz11/danRer11
DCD016198DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000842AA DCD012265BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000653SQ DCD000847TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000331DT: FASTQ
DCD006069DT: LOG GRCz10/danRer10
DCD006071DT: LOG GRCz10/danRer10
DCD006072DT: BAM GRCz10/danRer10
DCD006073DT: BAM GRCz10/danRer10
DCD006076DT: LOG GRCz10/danRer10
DCD006077DT: LOG GRCz10/danRer10
DCD006078DT: LOG GRCz10/danRer10
DCD006079DT: PDF GRCz10/danRer10
DCD006080DT: BAM GRCz10/danRer10
DCD006085DT: BAM GRCz10/danRer10
DCD006086DT: BAM GRCz10/danRer10
DCD008975DT: BIGNARROWPEAK GRCz10/danRer10
DCD009083DT: BIGWIG GRCz10/danRer10
DCD016221DT: BAM GRCz11/danRer11
DCD016222DT: BED GRCz11/danRer11
DCD016223DT: BIGNARROWPEAK GRCz11/danRer11
DCD016225DT: BIGNARROWPEAK GRCz11/danRer11
DCD016227DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000844AA DCD012265BR ChIP-seq_Skarmeta_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000655SQ DCD000849TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000326DT: FASTQ
DCD006014DT: LOG GRCz10/danRer10
DCD006016DT: LOG GRCz10/danRer10
DCD006018DT: BAM GRCz10/danRer10
DCD006020DT: LOG GRCz10/danRer10
DCD006022DT: LOG GRCz10/danRer10
DCD006023DT: LOG GRCz10/danRer10
DCD006024DT: PDF GRCz10/danRer10
DCD006026DT: BAM GRCz10/danRer10
DCD006027DT: BAM GRCz10/danRer10
DCD006031DT: BAM GRCz10/danRer10
DCD006035DT: BAM GRCz10/danRer10
DCD009088DT: BIGWIG GRCz10/danRer10
DCD016091DT: BIGNARROWPEAK GRCz11/danRer11
DCD016092DT: BIGNARROWPEAK GRCz11/danRer11
DCD016093DT: BED GRCz11/danRer11
DCD016094DT: BIGWIG GRCz11/danRer11
DCD016095DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000828AA DCD012273BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000639SQ DCD000833TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000340DT: FASTQ
DCD006168DT: LOG GRCz10/danRer10
DCD006172DT: BAM GRCz10/danRer10
DCD006173DT: LOG GRCz10/danRer10
DCD006175DT: LOG GRCz10/danRer10
DCD006176DT: LOG GRCz10/danRer10
DCD006177DT: PDF GRCz10/danRer10
DCD006178DT: LOG GRCz10/danRer10
DCD006180DT: BAM GRCz10/danRer10
DCD006185DT: BAM GRCz10/danRer10
DCD006186DT: BAM GRCz10/danRer10
DCD006192DT: BAM GRCz10/danRer10
DCD008981DT: BIGNARROWPEAK GRCz10/danRer10
DCD009098DT: BIGWIG GRCz10/danRer10
DCD016185DT: BED GRCz11/danRer11
DCD016187DT: BAM GRCz11/danRer11
DCD016188DT: BIGNARROWPEAK GRCz11/danRer11
DCD016189DT: BIGNARROWPEAK GRCz11/danRer11
DCD016192DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000841AA DCD012273BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000652SQ DCD000846TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000330DT: FASTQ
DCD006057DT: LOG GRCz10/danRer10
DCD006060DT: LOG GRCz10/danRer10
DCD006061DT: BAM GRCz10/danRer10
DCD006063DT: LOG GRCz10/danRer10
DCD006064DT: LOG GRCz10/danRer10
DCD006066DT: PDF GRCz10/danRer10
DCD006068DT: LOG GRCz10/danRer10
DCD006070DT: BAM GRCz10/danRer10
DCD006074DT: BAM GRCz10/danRer10
DCD006075DT: BAM GRCz10/danRer10
DCD006084DT: BAM GRCz10/danRer10
DCD008977DT: BIGNARROWPEAK GRCz10/danRer10
DCD009086DT: BIGWIG GRCz10/danRer10
DCD016224DT: BIGNARROWPEAK GRCz11/danRer11
DCD016226DT: BED GRCz11/danRer11
DCD016228DT: BAM GRCz11/danRer11
DCD016229DT: BIGNARROWPEAK GRCz11/danRer11
DCD016233DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001399AA DCD012901BR MethylCap-seq_Skarmeta_Lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001271SQ DCD001426TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2500 01/01/2013
DCD000864DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006176BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU
Applied Assay ID Biosample Replicate Assay
DCD000824AA DCD012268BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000635SQ DCD000829TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000336DT: FASTQ
DCD006124DT: LOG GRCz10/danRer10
DCD006126DT: LOG GRCz10/danRer10
DCD006127DT: BAM GRCz10/danRer10
DCD006129DT: LOG GRCz10/danRer10
DCD006131DT: LOG GRCz10/danRer10
DCD006133DT: LOG GRCz10/danRer10
DCD006134DT: PDF GRCz10/danRer10
DCD006136DT: BAM GRCz10/danRer10
DCD006139DT: BAM GRCz10/danRer10
DCD006141DT: BAM GRCz10/danRer10
DCD006143DT: BAM GRCz10/danRer10
DCD008967DT: BIGNARROWPEAK GRCz10/danRer10
DCD009080DT: BIGWIG GRCz10/danRer10
DCD016121DT: BAM GRCz11/danRer11
DCD016122DT: BIGNARROWPEAK GRCz11/danRer11
DCD016123DT: BIGNARROWPEAK GRCz11/danRer11
DCD016124DT: BED GRCz11/danRer11
DCD016125DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000834AA DCD012268BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000645SQ DCD000839TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000346DT: FASTQ
DCD006233DT: LOG GRCz10/danRer10
DCD006236DT: LOG GRCz10/danRer10
DCD006238DT: BAM GRCz10/danRer10
DCD006240DT: LOG GRCz10/danRer10
DCD006241DT: LOG GRCz10/danRer10
DCD006242DT: PDF GRCz10/danRer10
DCD006245DT: LOG GRCz10/danRer10
DCD006246DT: BAM GRCz10/danRer10
DCD006249DT: BAM GRCz10/danRer10
DCD006250DT: BAM GRCz10/danRer10
DCD006254DT: BAM GRCz10/danRer10
DCD008984DT: BIGNARROWPEAK GRCz10/danRer10
DCD009100DT: BIGWIG GRCz10/danRer10
DCD016210DT: BIGNARROWPEAK GRCz11/danRer11
DCD016211DT: BIGNARROWPEAK GRCz11/danRer11
DCD016212DT: BED GRCz11/danRer11
DCD016214DT: BAM GRCz11/danRer11
DCD016215DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000826AA DCD012271BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000637SQ DCD000831TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000337DT: FASTQ
DCD006135DT: LOG GRCz10/danRer10
DCD006137DT: LOG GRCz10/danRer10
DCD006138DT: BAM GRCz10/danRer10
DCD006140DT: LOG GRCz10/danRer10
DCD006142DT: LOG GRCz10/danRer10
DCD006144DT: PDF GRCz10/danRer10
DCD006145DT: LOG GRCz10/danRer10
DCD006147DT: BAM GRCz10/danRer10
DCD006152DT: BAM GRCz10/danRer10
DCD006154DT: BAM GRCz10/danRer10
DCD006159DT: BAM GRCz10/danRer10
DCD008974DT: BIGNARROWPEAK GRCz10/danRer10
DCD009078DT: BIGWIG GRCz10/danRer10
DCD016115DT: BIGNARROWPEAK GRCz11/danRer11
DCD016116DT: BED GRCz11/danRer11
DCD016118DT: BAM GRCz11/danRer11
DCD016119DT: BIGNARROWPEAK GRCz11/danRer11
DCD016120DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000837AA DCD012271BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000648SQ DCD000842TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000347DT: FASTQ
DCD006244DT: LOG GRCz10/danRer10
DCD006247DT: LOG GRCz10/danRer10
DCD006248DT: BAM GRCz10/danRer10
DCD006251DT: LOG GRCz10/danRer10
DCD006252DT: LOG GRCz10/danRer10
DCD006253DT: PDF GRCz10/danRer10
DCD006255DT: LOG GRCz10/danRer10
DCD006257DT: BAM GRCz10/danRer10
DCD006260DT: BAM GRCz10/danRer10
DCD006263DT: BAM GRCz10/danRer10
DCD006268DT: BAM GRCz10/danRer10
DCD008989DT: BIGNARROWPEAK GRCz10/danRer10
DCD009104DT: BIGWIG GRCz10/danRer10
DCD016216DT: BAM GRCz11/danRer11
DCD016217DT: BIGNARROWPEAK GRCz11/danRer11
DCD016218DT: BIGNARROWPEAK GRCz11/danRer11
DCD016219DT: BED GRCz11/danRer11
DCD016220DT: BIGWIG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006177BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU
Applied Assay ID Biosample Replicate Assay
DCD000822AA DCD012266BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000633SQ DCD000827TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000334DT: FASTQ
DCD006102DT: LOG GRCz10/danRer10
DCD006104DT: LOG GRCz10/danRer10
DCD006105DT: BAM GRCz10/danRer10
DCD006107DT: LOG GRCz10/danRer10
DCD006108DT: LOG GRCz10/danRer10
DCD006111DT: LOG GRCz10/danRer10
DCD006112DT: PDF GRCz10/danRer10
DCD006114DT: BAM GRCz10/danRer10
DCD006115DT: BAM GRCz10/danRer10
DCD006118DT: BAM GRCz10/danRer10
DCD006120DT: BAM GRCz10/danRer10
DCD008968DT: BIGNARROWPEAK GRCz10/danRer10
DCD009077DT: BIGWIG GRCz10/danRer10
DCD016175DT: BIGNARROWPEAK GRCz11/danRer11
DCD016176DT: BIGNARROWPEAK GRCz11/danRer11
DCD016178DT: BED GRCz11/danRer11
DCD016179DT: BIGWIG GRCz11/danRer11
DCD016180DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000832AA DCD012266BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000643SQ DCD000837TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000344DT: FASTQ
DCD006213DT: LOG GRCz10/danRer10
DCD006214DT: LOG GRCz10/danRer10
DCD006215DT: BAM GRCz10/danRer10
DCD006217DT: LOG GRCz10/danRer10
DCD006218DT: LOG GRCz10/danRer10
DCD006220DT: PDF GRCz10/danRer10
DCD006222DT: LOG GRCz10/danRer10
DCD006224DT: BAM GRCz10/danRer10
DCD006225DT: BAM GRCz10/danRer10
DCD006230DT: BAM GRCz10/danRer10
DCD006235DT: BAM GRCz10/danRer10
DCD008982DT: BIGNARROWPEAK GRCz10/danRer10
DCD009096DT: BIGWIG GRCz10/danRer10
DCD016251DT: BAM GRCz11/danRer11
DCD016252DT: BED GRCz11/danRer11
DCD016253DT: BIGNARROWPEAK GRCz11/danRer11
DCD016254DT: BIGNARROWPEAK GRCz11/danRer11
DCD016256DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000825AA DCD012269BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000636SQ DCD000830TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000335DT: FASTQ
DCD006113DT: LOG GRCz10/danRer10
DCD006116DT: BAM GRCz10/danRer10
DCD006117DT: LOG GRCz10/danRer10
DCD006119DT: LOG GRCz10/danRer10
DCD006121DT: LOG GRCz10/danRer10
DCD006122DT: PDF GRCz10/danRer10
DCD006123DT: LOG GRCz10/danRer10
DCD006125DT: BAM GRCz10/danRer10
DCD006128DT: BAM GRCz10/danRer10
DCD006130DT: BAM GRCz10/danRer10
DCD006132DT: BAM GRCz10/danRer10
DCD008972DT: BIGNARROWPEAK GRCz10/danRer10
DCD009076DT: BIGWIG GRCz10/danRer10
DCD016181DT: BAM GRCz11/danRer11
DCD016182DT: BIGNARROWPEAK GRCz11/danRer11
DCD016183DT: BIGNARROWPEAK GRCz11/danRer11
DCD016184DT: BED GRCz11/danRer11
DCD016186DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000835AA DCD012269BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000646SQ DCD000840TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000345DT: FASTQ
DCD006223DT: LOG GRCz10/danRer10
DCD006226DT: LOG GRCz10/danRer10
DCD006227DT: BAM GRCz10/danRer10
DCD006228DT: LOG GRCz10/danRer10
DCD006229DT: LOG GRCz10/danRer10
DCD006231DT: BAM GRCz10/danRer10
DCD006232DT: PDF GRCz10/danRer10
DCD006234DT: LOG GRCz10/danRer10
DCD006237DT: BAM GRCz10/danRer10
DCD006239DT: BAM GRCz10/danRer10
DCD006243DT: BAM GRCz10/danRer10
DCD008985DT: BIGNARROWPEAK GRCz10/danRer10
DCD009102DT: BIGWIG GRCz10/danRer10
DCD016246DT: BAM GRCz11/danRer11
DCD016247DT: BIGNARROWPEAK GRCz11/danRer11
DCD016248DT: BIGNARROWPEAK GRCz11/danRer11
DCD016249DT: BED GRCz11/danRer11
DCD016250DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000845AA DCD012269BR ChIP-seq_Skarmeta_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000656SQ DCD000850TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000327DT: FASTQ
DCD006025DT: LOG GRCz10/danRer10
DCD006028DT: LOG GRCz10/danRer10
DCD006029DT: BAM GRCz10/danRer10
DCD006030DT: LOG GRCz10/danRer10
DCD006032DT: LOG GRCz10/danRer10
DCD006033DT: PDF GRCz10/danRer10
DCD006034DT: LOG GRCz10/danRer10
DCD006037DT: BAM GRCz10/danRer10
DCD006040DT: BAM GRCz10/danRer10
DCD006043DT: BAM GRCz10/danRer10
DCD006059DT: BAM GRCz10/danRer10
DCD009091DT: BIGWIG GRCz10/danRer10
DCD016235DT: BIGNARROWPEAK GRCz11/danRer11
DCD016236DT: BIGNARROWPEAK GRCz11/danRer11
DCD016237DT: BED GRCz11/danRer11
DCD016239DT: BIGWIG GRCz11/danRer11
DCD016240DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006178BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU
Applied Assay ID Biosample Replicate Assay
DCD000836AA DCD012270BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000647SQ DCD000841TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2013
DCD000348DT: FASTQ
DCD006256DT: LOG GRCz10/danRer10
DCD006258DT: LOG GRCz10/danRer10
DCD006259DT: BAM GRCz10/danRer10
DCD006261DT: LOG GRCz10/danRer10
DCD006262DT: LOG GRCz10/danRer10
DCD006264DT: PDF GRCz10/danRer10
DCD006265DT: LOG GRCz10/danRer10
DCD006266DT: BAM GRCz10/danRer10
DCD006271DT: BAM GRCz10/danRer10
DCD006276DT: BAM GRCz10/danRer10
DCD006278DT: BAM GRCz10/danRer10
DCD008988DT: BIGNARROWPEAK GRCz10/danRer10
DCD009103DT: BIGWIG GRCz10/danRer10
DCD016136DT: BAM GRCz11/danRer11
DCD016137DT: BIGNARROWPEAK GRCz11/danRer11
DCD016138DT: BIGNARROWPEAK GRCz11/danRer11
DCD016139DT: BED GRCz11/danRer11
DCD016140DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000820AA DCD012272BR ChIP-seq_Skarmeta_Lab_H3K27me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000631SQ DCD000825TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000324DT: FASTQ
DCD005993DT: LOG GRCz10/danRer10
DCD005994DT: LOG GRCz10/danRer10
DCD005995DT: BAM GRCz10/danRer10
DCD005997DT: LOG GRCz10/danRer10
DCD005998DT: LOG GRCz10/danRer10
DCD006000DT: PDF GRCz10/danRer10
DCD006001DT: LOG GRCz10/danRer10
DCD006004DT: BAM GRCz10/danRer10
DCD006006DT: BAM GRCz10/danRer10
DCD006012DT: BAM GRCz10/danRer10
DCD006013DT: BAM GRCz10/danRer10
DCD009092DT: BIGWIG GRCz10/danRer10
DCD016126DT: BED GRCz11/danRer11
DCD016127DT: BAM GRCz11/danRer11
DCD016128DT: BIGNARROWPEAK GRCz11/danRer11
DCD016129DT: BIGNARROWPEAK GRCz11/danRer11
DCD016130DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000827AA DCD012272BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000638SQ DCD000832TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000338DT: FASTQ
DCD006146DT: LOG GRCz10/danRer10
DCD006148DT: LOG GRCz10/danRer10
DCD006149DT: BAM GRCz10/danRer10
DCD006150DT: BAM GRCz10/danRer10
DCD006151DT: LOG GRCz10/danRer10
DCD006153DT: LOG GRCz10/danRer10
DCD006155DT: PDF GRCz10/danRer10
DCD006156DT: LOG GRCz10/danRer10
DCD006157DT: BAM GRCz10/danRer10
DCD006160DT: BAM GRCz10/danRer10
DCD006167DT: BAM GRCz10/danRer10
DCD008973DT: BIGNARROWPEAK GRCz10/danRer10
DCD009082DT: BIGWIG GRCz10/danRer10
DCD016105DT: BED GRCz11/danRer11
DCD016106DT: BIGNARROWPEAK GRCz11/danRer11
DCD016108DT: BAM GRCz11/danRer11
DCD016109DT: BIGNARROWPEAK GRCz11/danRer11
DCD016113DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000838AA DCD012272BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000649SQ DCD000843TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000349DT: FASTQ
DCD006267DT: LOG GRCz10/danRer10
DCD006269DT: LOG GRCz10/danRer10
DCD006270DT: BAM GRCz10/danRer10
DCD006272DT: BAM GRCz10/danRer10
DCD006273DT: LOG GRCz10/danRer10
DCD006274DT: LOG GRCz10/danRer10
DCD006275DT: PDF GRCz10/danRer10
DCD006277DT: LOG GRCz10/danRer10
DCD006280DT: BAM GRCz10/danRer10
DCD006281DT: BAM GRCz10/danRer10
DCD006289DT: BAM GRCz10/danRer10
DCD008987DT: BIGNARROWPEAK GRCz10/danRer10
DCD009101DT: BIGWIG GRCz10/danRer10
DCD016141DT: BAM GRCz11/danRer11
DCD016142DT: BIGNARROWPEAK GRCz11/danRer11
DCD016143DT: BIGNARROWPEAK GRCz11/danRer11
DCD016145DT: BED GRCz11/danRer11
DCD016146DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000846AA DCD012272BR ChIP-seq_Skarmeta_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000657SQ DCD000851TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2011
DCD000328DT: FASTQ
DCD006036DT: LOG GRCz10/danRer10
DCD006038DT: LOG GRCz10/danRer10
DCD006039DT: BAM GRCz10/danRer10
DCD006041DT: LOG GRCz10/danRer10
DCD006042DT: BAM GRCz10/danRer10
DCD006044DT: LOG GRCz10/danRer10
DCD006045DT: PDF GRCz10/danRer10
DCD006046DT: LOG GRCz10/danRer10
DCD006048DT: BAM GRCz10/danRer10
DCD006050DT: BAM GRCz10/danRer10
DCD006052DT: BAM GRCz10/danRer10
DCD009090DT: BIGWIG GRCz10/danRer10
DCD016194DT: BIGNARROWPEAK GRCz11/danRer11
DCD016196DT: BIGNARROWPEAK GRCz11/danRer11
DCD016197DT: BED GRCz11/danRer11
DCD016199DT: BAM GRCz11/danRer11
DCD016202DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001402AA DCD012897BR MethylCap-seq_Skarmeta_Lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001260SQ DCD001428TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2500 01/01/2013
DCD000865DT: FASTQ