Series Summary for DCD000136SR

ChIP-seq analysis of H3K4me3, H3K4me1, H3K27ac and H3K27me3 and DNA methylation (MethylCap-seq) profling at different developmental time points of zebrafish embryogenesis

Survey

10.1101/gr.134833.111 , 10.1101/gr.139725.112 , 10.1016/j.gdata.2015.07.020

GSE32483, GSE35050, GSE70847

ChIP-seq analysis of H3K4me3 and H3K27ac at six developmental time points (dome, shield, 80% epiboly, 8-somites, 24hpf and 48pf), H3K4me1 at four time points (dome, 80% epiboly, 24hpf and 48pf) (GSE32483 + other data) and genome-wide DNA methylation (MethylCap-seq) and H3K27me3 (ChIP-seq) maps for three stages (dome, 24hpf and 48hpf) of zebrafish (Danio rerio) embryogenesis (GSE35050, GSE70847)

True

panosfirbas

May 6, 2016, 9:19 a.m.

Oct. 31, 2018, 2:02 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006173BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Long-pec 48
Applied Assay ID Biosample Replicate Assay
DCD000819AA DCD012274BR ChIP-seq_Skarmeta_Lab_H3K27me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000630SQ DCD000824TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000322DT: FASTQ
DCD005974DT: LOG GRCz10/danRer10
DCD005975DT: BAM GRCz10/danRer10
DCD005976DT: LOG GRCz10/danRer10
DCD005977DT: LOG GRCz10/danRer10
DCD005978DT: LOG GRCz10/danRer10
DCD005979DT: LOG GRCz10/danRer10
DCD005980DT: PDF GRCz10/danRer10
DCD005982DT: BAM GRCz10/danRer10
DCD005983DT: BAM GRCz10/danRer10
DCD005984DT: BAM GRCz10/danRer10
DCD005989DT: BAM GRCz10/danRer10
DCD009084DT: BIGWIG GRCz10/danRer10
DCD016230DT: BIGNARROWPEAK GRCz11/danRer11
DCD016231DT: BIGNARROWPEAK GRCz11/danRer11
DCD016232DT: BED GRCz11/danRer11
DCD016234DT: BAM GRCz11/danRer11
DCD016238DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000829AA DCD012274BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000640SQ DCD000834TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000339DT: FASTQ
DCD006158DT: LOG GRCz10/danRer10
DCD006161DT: LOG GRCz10/danRer10
DCD006162DT: BAM GRCz10/danRer10
DCD006163DT: LOG GRCz10/danRer10
DCD006164DT: LOG GRCz10/danRer10
DCD006165DT: PDF GRCz10/danRer10
DCD006166DT: LOG GRCz10/danRer10
DCD006169DT: BAM GRCz10/danRer10
DCD006170DT: BAM GRCz10/danRer10
DCD006171DT: BAM GRCz10/danRer10
DCD006174DT: BAM GRCz10/danRer10
DCD008979DT: BIGNARROWPEAK GRCz10/danRer10
DCD009094DT: BIGWIG GRCz10/danRer10
DCD016144DT: BED GRCz11/danRer11
DCD016147DT: BAM GRCz11/danRer11
DCD016149DT: BIGNARROWPEAK GRCz11/danRer11
DCD016150DT: BIGNARROWPEAK GRCz11/danRer11
DCD016152DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000839AA DCD012274BR ChIP-seq_Skarmeta_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000650SQ DCD000844TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000325DT: FASTQ
DCD006002DT: LOG GRCz10/danRer10
DCD006005DT: LOG GRCz10/danRer10
DCD006007DT: BAM GRCz10/danRer10
DCD006008DT: LOG GRCz10/danRer10
DCD006009DT: LOG GRCz10/danRer10
DCD006010DT: BAM GRCz10/danRer10
DCD006011DT: PDF GRCz10/danRer10
DCD006015DT: LOG GRCz10/danRer10
DCD006017DT: BAM GRCz10/danRer10
DCD006019DT: BAM GRCz10/danRer10
DCD006021DT: BAM GRCz10/danRer10
DCD009089DT: BIGWIG GRCz10/danRer10
DCD016155DT: BIGNARROWPEAK GRCz11/danRer11
DCD016156DT: BIGNARROWPEAK GRCz11/danRer11
DCD016157DT: BED GRCz11/danRer11
DCD016159DT: BAM GRCz11/danRer11
DCD016163DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000840AA DCD012274BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000651SQ DCD000845TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000329DT: FASTQ
DCD006047DT: LOG GRCz10/danRer10
DCD006049DT: LOG GRCz10/danRer10
DCD006051DT: BAM GRCz10/danRer10
DCD006053DT: LOG GRCz10/danRer10
DCD006054DT: LOG GRCz10/danRer10
DCD006055DT: PDF GRCz10/danRer10
DCD006056DT: LOG GRCz10/danRer10
DCD006058DT: BAM GRCz10/danRer10
DCD006062DT: BAM GRCz10/danRer10
DCD006065DT: BAM GRCz10/danRer10
DCD006067DT: BAM GRCz10/danRer10
DCD008976DT: BIGNARROWPEAK GRCz10/danRer10
DCD009085DT: BIGWIG GRCz10/danRer10
DCD016255DT: BED GRCz11/danRer11
DCD016257DT: BAM GRCz11/danRer11
DCD016258DT: BIGNARROWPEAK GRCz11/danRer11
DCD016259DT: BIGNARROWPEAK GRCz11/danRer11
DCD016262DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001400AA DCD012902BR MethylCap-seq_Skarmeta_Lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001263SQ DCD001422TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2500 50 01/01/2013
DCD000863DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006174BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU 5-9 somites 12
Applied Assay ID Biosample Replicate Assay
DCD000830AA DCD012264BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000641SQ DCD000835TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000342DT: FASTQ
DCD006191DT: LOG GRCz10/danRer10
DCD006193DT: LOG GRCz10/danRer10
DCD006194DT: BAM GRCz10/danRer10
DCD006195DT: LOG GRCz10/danRer10
DCD006197DT: LOG GRCz10/danRer10
DCD006198DT: PDF GRCz10/danRer10
DCD006199DT: LOG GRCz10/danRer10
DCD006203DT: BAM GRCz10/danRer10
DCD006207DT: BAM GRCz10/danRer10
DCD006210DT: BAM GRCz10/danRer10
DCD006216DT: BAM GRCz10/danRer10
DCD008980DT: BIGNARROWPEAK GRCz10/danRer10
DCD009099DT: BIGWIG GRCz10/danRer10
DCD016096DT: BAM GRCz11/danRer11
DCD016097DT: BIGNARROWPEAK GRCz11/danRer11
DCD016098DT: BIGNARROWPEAK GRCz11/danRer11
DCD016099DT: BED GRCz11/danRer11
DCD016101DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000843AA DCD012264BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000654SQ DCD000848TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000332DT: FASTQ
DCD006081DT: LOG GRCz10/danRer10
DCD006082DT: LOG GRCz10/danRer10
DCD006083DT: BAM GRCz10/danRer10
DCD006087DT: LOG GRCz10/danRer10
DCD006088DT: LOG GRCz10/danRer10
DCD006089DT: PDF GRCz10/danRer10
DCD006090DT: LOG GRCz10/danRer10
DCD006092DT: BAM GRCz10/danRer10
DCD006095DT: BAM GRCz10/danRer10
DCD006097DT: BAM GRCz10/danRer10
DCD006103DT: BAM GRCz10/danRer10
DCD008978DT: BIGNARROWPEAK GRCz10/danRer10
DCD009087DT: BIGWIG GRCz10/danRer10
DCD016160DT: BIGNARROWPEAK GRCz11/danRer11
DCD016161DT: BIGNARROWPEAK GRCz11/danRer11
DCD016162DT: BED GRCz11/danRer11
DCD016164DT: BIGWIG GRCz11/danRer11
DCD016165DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000823AA DCD012267BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000634SQ DCD000828TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000333DT: FASTQ
DCD006091DT: LOG GRCz10/danRer10
DCD006093DT: LOG GRCz10/danRer10
DCD006094DT: BAM GRCz10/danRer10
DCD006096DT: BAM GRCz10/danRer10
DCD006098DT: LOG GRCz10/danRer10
DCD006099DT: LOG GRCz10/danRer10
DCD006100DT: PDF GRCz10/danRer10
DCD006101DT: LOG GRCz10/danRer10
DCD006106DT: BAM GRCz10/danRer10
DCD006109DT: BAM GRCz10/danRer10
DCD006110DT: BAM GRCz10/danRer10
DCD008971DT: BIGNARROWPEAK GRCz10/danRer10
DCD009079DT: BIGWIG GRCz10/danRer10
DCD016166DT: BIGNARROWPEAK GRCz11/danRer11
DCD016167DT: BIGNARROWPEAK GRCz11/danRer11
DCD016168DT: BED GRCz11/danRer11
DCD016169DT: BIGWIG GRCz11/danRer11
DCD016171DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000833AA DCD012267BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000644SQ DCD000838TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000343DT: FASTQ
DCD006200DT: LOG GRCz10/danRer10
DCD006202DT: BAM GRCz10/danRer10
DCD006204DT: BAM GRCz10/danRer10
DCD006205DT: LOG GRCz10/danRer10
DCD006206DT: LOG GRCz10/danRer10
DCD006208DT: BAM GRCz10/danRer10
DCD006209DT: LOG GRCz10/danRer10
DCD006211DT: LOG GRCz10/danRer10
DCD006212DT: PDF GRCz10/danRer10
DCD006219DT: BAM GRCz10/danRer10
DCD006221DT: BAM GRCz10/danRer10
DCD008986DT: BIGNARROWPEAK GRCz10/danRer10
DCD009095DT: BIGWIG GRCz10/danRer10
DCD016100DT: BED GRCz11/danRer11
DCD016102DT: BAM GRCz11/danRer11
DCD016103DT: BIGNARROWPEAK GRCz11/danRer11
DCD016104DT: BIGNARROWPEAK GRCz11/danRer11
DCD016107DT: BIGWIG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006175BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD000821AA DCD012265BR ChIP-seq_Skarmeta_Lab_H3K27me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000632SQ DCD000826TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000323DT: FASTQ
DCD005981DT: LOG GRCz10/danRer10
DCD005985DT: LOG GRCz10/danRer10
DCD005986DT: BAM GRCz10/danRer10
DCD005987DT: LOG GRCz10/danRer10
DCD005988DT: LOG GRCz10/danRer10
DCD005990DT: PDF GRCz10/danRer10
DCD005991DT: BAM GRCz10/danRer10
DCD005992DT: LOG GRCz10/danRer10
DCD005996DT: BAM GRCz10/danRer10
DCD005999DT: BAM GRCz10/danRer10
DCD006003DT: BAM GRCz10/danRer10
DCD009093DT: BIGWIG GRCz10/danRer10
DCD016148DT: BIGNARROWPEAK GRCz11/danRer11
DCD016151DT: BED GRCz11/danRer11
DCD016153DT: BAM GRCz11/danRer11
DCD016154DT: BIGNARROWPEAK GRCz11/danRer11
DCD016158DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000831AA DCD012265BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000642SQ DCD000836TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000341DT: FASTQ
DCD006179DT: LOG GRCz10/danRer10
DCD006181DT: BAM GRCz10/danRer10
DCD006182DT: BAM GRCz10/danRer10
DCD006183DT: LOG GRCz10/danRer10
DCD006184DT: LOG GRCz10/danRer10
DCD006187DT: LOG GRCz10/danRer10
DCD006188DT: PDF GRCz10/danRer10
DCD006189DT: LOG GRCz10/danRer10
DCD006190DT: BAM GRCz10/danRer10
DCD006196DT: BAM GRCz10/danRer10
DCD006201DT: BAM GRCz10/danRer10
DCD008983DT: BIGNARROWPEAK GRCz10/danRer10
DCD009097DT: BIGWIG GRCz10/danRer10
DCD016190DT: BIGNARROWPEAK GRCz11/danRer11
DCD016191DT: BED GRCz11/danRer11
DCD016193DT: BAM GRCz11/danRer11
DCD016195DT: BIGNARROWPEAK GRCz11/danRer11
DCD016198DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000842AA DCD012265BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000653SQ DCD000847TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000331DT: FASTQ
DCD006069DT: LOG GRCz10/danRer10
DCD006071DT: LOG GRCz10/danRer10
DCD006072DT: BAM GRCz10/danRer10
DCD006073DT: BAM GRCz10/danRer10
DCD006076DT: LOG GRCz10/danRer10
DCD006077DT: LOG GRCz10/danRer10
DCD006078DT: LOG GRCz10/danRer10
DCD006079DT: PDF GRCz10/danRer10
DCD006080DT: BAM GRCz10/danRer10
DCD006085DT: BAM GRCz10/danRer10
DCD006086DT: BAM GRCz10/danRer10
DCD008975DT: BIGNARROWPEAK GRCz10/danRer10
DCD009083DT: BIGWIG GRCz10/danRer10
DCD016221DT: BAM GRCz11/danRer11
DCD016222DT: BED GRCz11/danRer11
DCD016223DT: BIGNARROWPEAK GRCz11/danRer11
DCD016225DT: BIGNARROWPEAK GRCz11/danRer11
DCD016227DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000844AA DCD012265BR ChIP-seq_Skarmeta_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000655SQ DCD000849TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000326DT: FASTQ
DCD006014DT: LOG GRCz10/danRer10
DCD006016DT: LOG GRCz10/danRer10
DCD006018DT: BAM GRCz10/danRer10
DCD006020DT: LOG GRCz10/danRer10
DCD006022DT: LOG GRCz10/danRer10
DCD006023DT: LOG GRCz10/danRer10
DCD006024DT: PDF GRCz10/danRer10
DCD006026DT: BAM GRCz10/danRer10
DCD006027DT: BAM GRCz10/danRer10
DCD006031DT: BAM GRCz10/danRer10
DCD006035DT: BAM GRCz10/danRer10
DCD009088DT: BIGWIG GRCz10/danRer10
DCD016091DT: BIGNARROWPEAK GRCz11/danRer11
DCD016092DT: BIGNARROWPEAK GRCz11/danRer11
DCD016093DT: BED GRCz11/danRer11
DCD016094DT: BIGWIG GRCz11/danRer11
DCD016095DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000828AA DCD012273BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000639SQ DCD000833TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000340DT: FASTQ
DCD006168DT: LOG GRCz10/danRer10
DCD006172DT: BAM GRCz10/danRer10
DCD006173DT: LOG GRCz10/danRer10
DCD006175DT: LOG GRCz10/danRer10
DCD006176DT: LOG GRCz10/danRer10
DCD006177DT: PDF GRCz10/danRer10
DCD006178DT: LOG GRCz10/danRer10
DCD006180DT: BAM GRCz10/danRer10
DCD006185DT: BAM GRCz10/danRer10
DCD006186DT: BAM GRCz10/danRer10
DCD006192DT: BAM GRCz10/danRer10
DCD008981DT: BIGNARROWPEAK GRCz10/danRer10
DCD009098DT: BIGWIG GRCz10/danRer10
DCD016185DT: BED GRCz11/danRer11
DCD016187DT: BAM GRCz11/danRer11
DCD016188DT: BIGNARROWPEAK GRCz11/danRer11
DCD016189DT: BIGNARROWPEAK GRCz11/danRer11
DCD016192DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000841AA DCD012273BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000652SQ DCD000846TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000330DT: FASTQ
DCD006057DT: LOG GRCz10/danRer10
DCD006060DT: LOG GRCz10/danRer10
DCD006061DT: BAM GRCz10/danRer10
DCD006063DT: LOG GRCz10/danRer10
DCD006064DT: LOG GRCz10/danRer10
DCD006066DT: PDF GRCz10/danRer10
DCD006068DT: LOG GRCz10/danRer10
DCD006070DT: BAM GRCz10/danRer10
DCD006074DT: BAM GRCz10/danRer10
DCD006075DT: BAM GRCz10/danRer10
DCD006084DT: BAM GRCz10/danRer10
DCD008977DT: BIGNARROWPEAK GRCz10/danRer10
DCD009086DT: BIGWIG GRCz10/danRer10
DCD016224DT: BIGNARROWPEAK GRCz11/danRer11
DCD016226DT: BED GRCz11/danRer11
DCD016228DT: BAM GRCz11/danRer11
DCD016229DT: BIGNARROWPEAK GRCz11/danRer11
DCD016233DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001399AA DCD012901BR MethylCap-seq_Skarmeta_Lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001271SQ DCD001426TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2500 50 01/01/2013
DCD000864DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006176BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Shield 6
Applied Assay ID Biosample Replicate Assay
DCD000824AA DCD012268BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000635SQ DCD000829TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000336DT: FASTQ
DCD006124DT: LOG GRCz10/danRer10
DCD006126DT: LOG GRCz10/danRer10
DCD006127DT: BAM GRCz10/danRer10
DCD006129DT: LOG GRCz10/danRer10
DCD006131DT: LOG GRCz10/danRer10
DCD006133DT: LOG GRCz10/danRer10
DCD006134DT: PDF GRCz10/danRer10
DCD006136DT: BAM GRCz10/danRer10
DCD006139DT: BAM GRCz10/danRer10
DCD006141DT: BAM GRCz10/danRer10
DCD006143DT: BAM GRCz10/danRer10
DCD008967DT: BIGNARROWPEAK GRCz10/danRer10
DCD009080DT: BIGWIG GRCz10/danRer10
DCD016121DT: BAM GRCz11/danRer11
DCD016122DT: BIGNARROWPEAK GRCz11/danRer11
DCD016123DT: BIGNARROWPEAK GRCz11/danRer11
DCD016124DT: BED GRCz11/danRer11
DCD016125DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000834AA DCD012268BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000645SQ DCD000839TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000346DT: FASTQ
DCD006233DT: LOG GRCz10/danRer10
DCD006236DT: LOG GRCz10/danRer10
DCD006238DT: BAM GRCz10/danRer10
DCD006240DT: LOG GRCz10/danRer10
DCD006241DT: LOG GRCz10/danRer10
DCD006242DT: PDF GRCz10/danRer10
DCD006245DT: LOG GRCz10/danRer10
DCD006246DT: BAM GRCz10/danRer10
DCD006249DT: BAM GRCz10/danRer10
DCD006250DT: BAM GRCz10/danRer10
DCD006254DT: BAM GRCz10/danRer10
DCD008984DT: BIGNARROWPEAK GRCz10/danRer10
DCD009100DT: BIGWIG GRCz10/danRer10
DCD016210DT: BIGNARROWPEAK GRCz11/danRer11
DCD016211DT: BIGNARROWPEAK GRCz11/danRer11
DCD016212DT: BED GRCz11/danRer11
DCD016214DT: BAM GRCz11/danRer11
DCD016215DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000826AA DCD012271BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000637SQ DCD000831TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000337DT: FASTQ
DCD006135DT: LOG GRCz10/danRer10
DCD006137DT: LOG GRCz10/danRer10
DCD006138DT: BAM GRCz10/danRer10
DCD006140DT: LOG GRCz10/danRer10
DCD006142DT: LOG GRCz10/danRer10
DCD006144DT: PDF GRCz10/danRer10
DCD006145DT: LOG GRCz10/danRer10
DCD006147DT: BAM GRCz10/danRer10
DCD006152DT: BAM GRCz10/danRer10
DCD006154DT: BAM GRCz10/danRer10
DCD006159DT: BAM GRCz10/danRer10
DCD008974DT: BIGNARROWPEAK GRCz10/danRer10
DCD009078DT: BIGWIG GRCz10/danRer10
DCD016115DT: BIGNARROWPEAK GRCz11/danRer11
DCD016116DT: BED GRCz11/danRer11
DCD016118DT: BAM GRCz11/danRer11
DCD016119DT: BIGNARROWPEAK GRCz11/danRer11
DCD016120DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000837AA DCD012271BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000648SQ DCD000842TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000347DT: FASTQ
DCD006244DT: LOG GRCz10/danRer10
DCD006247DT: LOG GRCz10/danRer10
DCD006248DT: BAM GRCz10/danRer10
DCD006251DT: LOG GRCz10/danRer10
DCD006252DT: LOG GRCz10/danRer10
DCD006253DT: PDF GRCz10/danRer10
DCD006255DT: LOG GRCz10/danRer10
DCD006257DT: BAM GRCz10/danRer10
DCD006260DT: BAM GRCz10/danRer10
DCD006263DT: BAM GRCz10/danRer10
DCD006268DT: BAM GRCz10/danRer10
DCD008989DT: BIGNARROWPEAK GRCz10/danRer10
DCD009104DT: BIGWIG GRCz10/danRer10
DCD016216DT: BAM GRCz11/danRer11
DCD016217DT: BIGNARROWPEAK GRCz11/danRer11
DCD016218DT: BIGNARROWPEAK GRCz11/danRer11
DCD016219DT: BED GRCz11/danRer11
DCD016220DT: BIGWIG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006177BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU 75%-epiboly 8
Applied Assay ID Biosample Replicate Assay
DCD000822AA DCD012266BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000633SQ DCD000827TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000334DT: FASTQ
DCD006102DT: LOG GRCz10/danRer10
DCD006104DT: LOG GRCz10/danRer10
DCD006105DT: BAM GRCz10/danRer10
DCD006107DT: LOG GRCz10/danRer10
DCD006108DT: LOG GRCz10/danRer10
DCD006111DT: LOG GRCz10/danRer10
DCD006112DT: PDF GRCz10/danRer10
DCD006114DT: BAM GRCz10/danRer10
DCD006115DT: BAM GRCz10/danRer10
DCD006118DT: BAM GRCz10/danRer10
DCD006120DT: BAM GRCz10/danRer10
DCD008968DT: BIGNARROWPEAK GRCz10/danRer10
DCD009077DT: BIGWIG GRCz10/danRer10
DCD016175DT: BIGNARROWPEAK GRCz11/danRer11
DCD016176DT: BIGNARROWPEAK GRCz11/danRer11
DCD016178DT: BED GRCz11/danRer11
DCD016179DT: BIGWIG GRCz11/danRer11
DCD016180DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000832AA DCD012266BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000643SQ DCD000837TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000344DT: FASTQ
DCD006213DT: LOG GRCz10/danRer10
DCD006214DT: LOG GRCz10/danRer10
DCD006215DT: BAM GRCz10/danRer10
DCD006217DT: LOG GRCz10/danRer10
DCD006218DT: LOG GRCz10/danRer10
DCD006220DT: PDF GRCz10/danRer10
DCD006222DT: LOG GRCz10/danRer10
DCD006224DT: BAM GRCz10/danRer10
DCD006225DT: BAM GRCz10/danRer10
DCD006230DT: BAM GRCz10/danRer10
DCD006235DT: BAM GRCz10/danRer10
DCD008982DT: BIGNARROWPEAK GRCz10/danRer10
DCD009096DT: BIGWIG GRCz10/danRer10
DCD016251DT: BAM GRCz11/danRer11
DCD016252DT: BED GRCz11/danRer11
DCD016253DT: BIGNARROWPEAK GRCz11/danRer11
DCD016254DT: BIGNARROWPEAK GRCz11/danRer11
DCD016256DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000825AA DCD012269BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000636SQ DCD000830TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000335DT: FASTQ
DCD006113DT: LOG GRCz10/danRer10
DCD006116DT: BAM GRCz10/danRer10
DCD006117DT: LOG GRCz10/danRer10
DCD006119DT: LOG GRCz10/danRer10
DCD006121DT: LOG GRCz10/danRer10
DCD006122DT: PDF GRCz10/danRer10
DCD006123DT: LOG GRCz10/danRer10
DCD006125DT: BAM GRCz10/danRer10
DCD006128DT: BAM GRCz10/danRer10
DCD006130DT: BAM GRCz10/danRer10
DCD006132DT: BAM GRCz10/danRer10
DCD008972DT: BIGNARROWPEAK GRCz10/danRer10
DCD009076DT: BIGWIG GRCz10/danRer10
DCD016181DT: BAM GRCz11/danRer11
DCD016182DT: BIGNARROWPEAK GRCz11/danRer11
DCD016183DT: BIGNARROWPEAK GRCz11/danRer11
DCD016184DT: BED GRCz11/danRer11
DCD016186DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000835AA DCD012269BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000646SQ DCD000840TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000345DT: FASTQ
DCD006223DT: LOG GRCz10/danRer10
DCD006226DT: LOG GRCz10/danRer10
DCD006227DT: BAM GRCz10/danRer10
DCD006228DT: LOG GRCz10/danRer10
DCD006229DT: LOG GRCz10/danRer10
DCD006231DT: BAM GRCz10/danRer10
DCD006232DT: PDF GRCz10/danRer10
DCD006234DT: LOG GRCz10/danRer10
DCD006237DT: BAM GRCz10/danRer10
DCD006239DT: BAM GRCz10/danRer10
DCD006243DT: BAM GRCz10/danRer10
DCD008985DT: BIGNARROWPEAK GRCz10/danRer10
DCD009102DT: BIGWIG GRCz10/danRer10
DCD016246DT: BAM GRCz11/danRer11
DCD016247DT: BIGNARROWPEAK GRCz11/danRer11
DCD016248DT: BIGNARROWPEAK GRCz11/danRer11
DCD016249DT: BED GRCz11/danRer11
DCD016250DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000845AA DCD012269BR ChIP-seq_Skarmeta_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000656SQ DCD000850TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000327DT: FASTQ
DCD006025DT: LOG GRCz10/danRer10
DCD006028DT: LOG GRCz10/danRer10
DCD006029DT: BAM GRCz10/danRer10
DCD006030DT: LOG GRCz10/danRer10
DCD006032DT: LOG GRCz10/danRer10
DCD006033DT: PDF GRCz10/danRer10
DCD006034DT: LOG GRCz10/danRer10
DCD006037DT: BAM GRCz10/danRer10
DCD006040DT: BAM GRCz10/danRer10
DCD006043DT: BAM GRCz10/danRer10
DCD006059DT: BAM GRCz10/danRer10
DCD009091DT: BIGWIG GRCz10/danRer10
DCD016235DT: BIGNARROWPEAK GRCz11/danRer11
DCD016236DT: BIGNARROWPEAK GRCz11/danRer11
DCD016237DT: BED GRCz11/danRer11
DCD016239DT: BIGWIG GRCz11/danRer11
DCD016240DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD006178BS DCD000136SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Dome 4.3
Applied Assay ID Biosample Replicate Assay
DCD000836AA DCD012270BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000647SQ DCD000841TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2013
DCD000348DT: FASTQ
DCD006256DT: LOG GRCz10/danRer10
DCD006258DT: LOG GRCz10/danRer10
DCD006259DT: BAM GRCz10/danRer10
DCD006261DT: LOG GRCz10/danRer10
DCD006262DT: LOG GRCz10/danRer10
DCD006264DT: PDF GRCz10/danRer10
DCD006265DT: LOG GRCz10/danRer10
DCD006266DT: BAM GRCz10/danRer10
DCD006271DT: BAM GRCz10/danRer10
DCD006276DT: BAM GRCz10/danRer10
DCD006278DT: BAM GRCz10/danRer10
DCD008988DT: BIGNARROWPEAK GRCz10/danRer10
DCD009103DT: BIGWIG GRCz10/danRer10
DCD016136DT: BAM GRCz11/danRer11
DCD016137DT: BIGNARROWPEAK GRCz11/danRer11
DCD016138DT: BIGNARROWPEAK GRCz11/danRer11
DCD016139DT: BED GRCz11/danRer11
DCD016140DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000820AA DCD012272BR ChIP-seq_Skarmeta_Lab_H3K27me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000631SQ DCD000825TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000324DT: FASTQ
DCD005993DT: LOG GRCz10/danRer10
DCD005994DT: LOG GRCz10/danRer10
DCD005995DT: BAM GRCz10/danRer10
DCD005997DT: LOG GRCz10/danRer10
DCD005998DT: LOG GRCz10/danRer10
DCD006000DT: PDF GRCz10/danRer10
DCD006001DT: LOG GRCz10/danRer10
DCD006004DT: BAM GRCz10/danRer10
DCD006006DT: BAM GRCz10/danRer10
DCD006012DT: BAM GRCz10/danRer10
DCD006013DT: BAM GRCz10/danRer10
DCD009092DT: BIGWIG GRCz10/danRer10
DCD016126DT: BED GRCz11/danRer11
DCD016127DT: BAM GRCz11/danRer11
DCD016128DT: BIGNARROWPEAK GRCz11/danRer11
DCD016129DT: BIGNARROWPEAK GRCz11/danRer11
DCD016130DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000827AA DCD012272BR ChIP-seq_Skarmeta_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000638SQ DCD000832TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000338DT: FASTQ
DCD006146DT: LOG GRCz10/danRer10
DCD006148DT: LOG GRCz10/danRer10
DCD006149DT: BAM GRCz10/danRer10
DCD006150DT: BAM GRCz10/danRer10
DCD006151DT: LOG GRCz10/danRer10
DCD006153DT: LOG GRCz10/danRer10
DCD006155DT: PDF GRCz10/danRer10
DCD006156DT: LOG GRCz10/danRer10
DCD006157DT: BAM GRCz10/danRer10
DCD006160DT: BAM GRCz10/danRer10
DCD006167DT: BAM GRCz10/danRer10
DCD008973DT: BIGNARROWPEAK GRCz10/danRer10
DCD009082DT: BIGWIG GRCz10/danRer10
DCD016105DT: BED GRCz11/danRer11
DCD016106DT: BIGNARROWPEAK GRCz11/danRer11
DCD016108DT: BAM GRCz11/danRer11
DCD016109DT: BIGNARROWPEAK GRCz11/danRer11
DCD016113DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000838AA DCD012272BR ChIP-seq_Skarmeta_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD000649SQ DCD000843TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000349DT: FASTQ
DCD006267DT: LOG GRCz10/danRer10
DCD006269DT: LOG GRCz10/danRer10
DCD006270DT: BAM GRCz10/danRer10
DCD006272DT: BAM GRCz10/danRer10
DCD006273DT: LOG GRCz10/danRer10
DCD006274DT: LOG GRCz10/danRer10
DCD006275DT: PDF GRCz10/danRer10
DCD006277DT: LOG GRCz10/danRer10
DCD006280DT: BAM GRCz10/danRer10
DCD006281DT: BAM GRCz10/danRer10
DCD006289DT: BAM GRCz10/danRer10
DCD008987DT: BIGNARROWPEAK GRCz10/danRer10
DCD009101DT: BIGWIG GRCz10/danRer10
DCD016141DT: BAM GRCz11/danRer11
DCD016142DT: BIGNARROWPEAK GRCz11/danRer11
DCD016143DT: BIGNARROWPEAK GRCz11/danRer11
DCD016145DT: BED GRCz11/danRer11
DCD016146DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000846AA DCD012272BR ChIP-seq_Skarmeta_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000657SQ DCD000851TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 49 01/01/2011
DCD000328DT: FASTQ
DCD006036DT: LOG GRCz10/danRer10
DCD006038DT: LOG GRCz10/danRer10
DCD006039DT: BAM GRCz10/danRer10
DCD006041DT: LOG GRCz10/danRer10
DCD006042DT: BAM GRCz10/danRer10
DCD006044DT: LOG GRCz10/danRer10
DCD006045DT: PDF GRCz10/danRer10
DCD006046DT: LOG GRCz10/danRer10
DCD006048DT: BAM GRCz10/danRer10
DCD006050DT: BAM GRCz10/danRer10
DCD006052DT: BAM GRCz10/danRer10
DCD009090DT: BIGWIG GRCz10/danRer10
DCD016194DT: BIGNARROWPEAK GRCz11/danRer11
DCD016196DT: BIGNARROWPEAK GRCz11/danRer11
DCD016197DT: BED GRCz11/danRer11
DCD016199DT: BAM GRCz11/danRer11
DCD016202DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001402AA DCD012897BR MethylCap-seq_Skarmeta_Lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001260SQ DCD001428TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2500 unstranded 50 01/01/2013
DCD000865DT: FASTQ