Series Summary for DCD000137SR

Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish.

Survey

10.1126/science.1215704

GSE34743

Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish.

True

giraldezlab

May 6, 2016, 9:36 a.m.

Oct. 4, 2017, 6:42 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization Mutation Description
DCD006179BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU Shield 6 MZdicer
Applied Assay ID Biosample Replicate Assay
DCD000912AA DCD012275BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000704SQ DCD000852TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000380DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000705SQ DCD000852TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000383DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000706SQ DCD000852TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000382DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000707SQ DCD000852TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000381DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000927AA DCD012290BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000667SQ DCD000867TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000384DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000668SQ DCD000867TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000385DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000669SQ DCD000867TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000386DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization Mutation Description
DCD006180BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU Shield 6 —
Applied Assay ID Biosample Replicate Assay
DCD000913AA DCD012276BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000659SQ DCD000853TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000379DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000662SQ DCD000853TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000378DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000880AA DCD012327BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000767SQ DCD000904TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000376DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000768SQ DCD000904TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000377DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization Mutation Description
DCD006187BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU Sphere 4 MZdicer
Applied Assay ID Biosample Replicate Assay
DCD000920AA DCD012283BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000681SQ DCD000860TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000404DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000682SQ DCD000860TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000403DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000683SQ DCD000860TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000402DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000886AA DCD012333BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000695SQ DCD000910TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000407DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000720SQ DCD000910TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000408DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000722SQ DCD000910TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000406DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000723SQ DCD000910TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000405DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006188BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU Sphere 4
Applied Assay ID Biosample Replicate Assay
DCD000921AA DCD012284BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000793SQ DCD000861TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000401DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000794SQ DCD000861TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000400DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000922AA DCD012285BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000674SQ DCD000862TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000398DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000676SQ DCD000862TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000399DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization Mutation Description
DCD006190BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU Sphere 4 MZdicer
Applied Assay ID Biosample Replicate Assay
DCD000923AA DCD012286BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000789SQ DCD000863TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000396DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000790SQ DCD000863TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000397DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000924AA DCD012287BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000663SQ DCD000864TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000395DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000664SQ DCD000864TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000394DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006192BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU Shield 6
Applied Assay ID Biosample Replicate Assay
DCD000925AA DCD012288BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000782SQ DCD000865TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000393DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000783SQ DCD000865TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000391DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000784SQ DCD000865TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000392DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000926AA DCD012289BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000709SQ DCD000866TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000389DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000710SQ DCD000866TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000388DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000712SQ DCD000866TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000390DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000714SQ DCD000866TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000387DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006198BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU 64-cell 2
Applied Assay ID Biosample Replicate Assay
DCD000847AA DCD012294BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000660SQ DCD000871TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000428DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000661SQ DCD000871TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000429DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000895AA DCD012342BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000675SQ DCD000919TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000426DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000740SQ DCD000919TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000427DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization Mutation Description
DCD006229BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU Shield 6 MZdicer
Applied Assay ID Biosample Replicate Assay
DCD000878AA DCD012325BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000771SQ DCD000902TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000375DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000772SQ DCD000902TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000374DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006238BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU Sphere 4
Applied Assay ID Biosample Replicate Assay
DCD000887AA DCD012334BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000678SQ DCD000911TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000409DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000680SQ DCD000911TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000411DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000777SQ DCD000911TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000410DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000892AA DCD012339BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000785SQ DCD000916TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000412DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000786SQ DCD000916TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000414DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000787SQ DCD000916TR Giraldez Lab, Yale Illumina GAIIx forward 51 01/09/2012
DCD000413DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000788SQ DCD000916TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000415DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006242BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU 64-cell 2
Applied Assay ID Biosample Replicate Assay
DCD000891AA DCD012338BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000751SQ DCD000915TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000419DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000752SQ DCD000915TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000418DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000896AA DCD012343BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000765SQ DCD000920TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000420DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000766SQ DCD000920TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000421DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD006244BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU 64-cell — — 2 MZdicer
Applied Assay ID Biosample Replicate Assay Controlled By
DCD000893AA DCD012340BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000744SQ DCD000917TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000416DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD000745SQ DCD000917TR Giraldez Lab, Yale Illumina HiSeq 2000 — ✘ forward 76 02/14/2011
DCD000417DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization Mutation Description
DCD006245BS DCD000137SR whole organism Giraldez Lab, Yale AB/TU 64-cell 2 MZdicer
Applied Assay ID Biosample Replicate Assay
DCD000894AA DCD012341BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000743SQ DCD000918TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000424DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000778SQ DCD000918TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000425DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000897AA DCD012344BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000732SQ DCD000921TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 05/10/2011
DCD000422DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000733SQ DCD000921TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 76 02/14/2011
DCD000423DT: FASTQ