Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition.
Survey
10.1038/nature12632
GSE47558
Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition.
True
giraldezlab
May 6, 2016, 9:36 a.m.
Oct. 22, 2018, 9:22 p.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006183BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | 75%-epiboly | 8 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000916AA | DCD012279BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000747SQ | DCD000856TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 04/26/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006185BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000918AA | DCD012281BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000806SQ | DCD000858TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 04/26/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006196BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000929AA | DCD012292BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000700SQ | DCD000869TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000856AA | DCD012303BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000791SQ | DCD000880TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006197BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000930AA | DCD012293BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000737SQ | DCD000870TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006201BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000850AA | DCD012297BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000711SQ | DCD000874TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000798SQ | DCD000874TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000801SQ | DCD000874TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006202BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000851AA | DCD012298BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000687SQ | DCD000875TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 03/12/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000688SQ | DCD000875TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006208BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000857AA | DCD012304BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000670SQ | DCD000881TR | Giraldez Lab, Yale | Illumina | HiSeq 2000 | reverse | 76 | 11/27/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006209BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | 64-cell | 2 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000858AA | DCD012305BR | Ribo-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000701SQ | DCD000882TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | forward | 76 | 03/25/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006210BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | 64-cell | 2 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000859AA | DCD012306BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000802SQ | DCD000883TR | Giraldez Lab, Yale | Illumina | HiSeq 2000 | reverse | 76 | 04/23/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000803SQ | DCD000883TR | Giraldez Lab, Yale | Illumina | HiSeq 2000 | reverse | 76 | 11/27/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006212BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000861AA | DCD012308BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000776SQ | DCD000885TR | Giraldez Lab, Yale | Illumina | HiSeq 2000 | reverse | 76 | 04/26/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006213BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000862AA | DCD012309BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000715SQ | DCD000886TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000716SQ | DCD000886TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 03/12/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000718SQ | DCD000886TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006217BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | 75%-epiboly | 8 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000866AA | DCD012313BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000799SQ | DCD000890TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 04/26/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006219BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000868AA | DCD012315BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000804SQ | DCD000892TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 04/26/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006224BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000873AA | DCD012320BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000742SQ | DCD000897TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 04/26/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006225BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | 75%-epiboly | 8 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000874AA | DCD012321BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000703SQ | DCD000898TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 04/26/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006226BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000875AA | DCD012322BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000671SQ | DCD000899TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000672SQ | DCD000899TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000673SQ | DCD000899TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006227BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000876AA | DCD012323BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000739SQ | DCD000900TR | Giraldez Lab, Yale | Illumina | HiSeq 2000 | reverse | 76 | 04/26/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006230BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000879AA | DCD012326BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000736SQ | DCD000903TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000888AA | DCD012335BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000721SQ | DCD000912TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000898AA | DCD012345BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000773SQ | DCD000922TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006233BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000882AA | DCD012329BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000727SQ | DCD000906TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000728SQ | DCD000906TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000729SQ | DCD000906TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Treatment | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006234BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | — | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000883AA | DCD012330BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000696SQ | DCD000907TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000719SQ | DCD000907TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000797SQ | DCD000907TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Treatment | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006236BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | 64-cell | nanog_MO | 2 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000885AA | DCD012332BR | RNA-seq_Giraldez_Lab_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000731SQ | DCD000909TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | forward | 76 | 02/27/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Treatment | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006240BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | soxB1_MO | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000889AA | DCD012336BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000792SQ | DCD000913TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Treatment | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006241BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | nanog_MO,soxB1_MO | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000890AA | DCD012337BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000754SQ | DCD000914TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000755SQ | DCD000914TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000756SQ | DCD000914TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/27/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Treatment | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006250BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | alpha-am | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000899AA | DCD012346BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000702SQ | DCD000923TR | Giraldez Lab, Yale | Illumina | HiSeq 2000 | reverse | 76 | 08/13/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006251BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000900AA | DCD012347BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000769SQ | DCD000924TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 03/12/2013 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000770SQ | DCD000924TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006252BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000901AA | DCD012348BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000762SQ | DCD000925TR | Giraldez Lab, Yale | Illumina | HiSeq 2000 | reverse | 76 | 11/27/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Treatment | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006255BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | nanog_MO | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000904AA | DCD012351BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000749SQ | DCD000928TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Treatment | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006256BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Shield | nanog_MO | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000905AA | DCD012352BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000708SQ | DCD000929TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006258BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | 64-cell | 2 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000907AA | DCD012354BR | RNA-seq_Giraldez_Lab_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000677SQ | DCD000931TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | forward | 76 | 02/27/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Treatment | Hours Post Fertilization | Mutation Description |
|---|---|---|---|---|---|---|---|---|
| DCD006259BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | soxB1_MO | 4 | — |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000908AA | DCD012355BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000779SQ | DCD000932TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | reverse | 76 | 02/20/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Controlled By | anatomical_term | Treatment | Hours Post Fertilization | Mutation Description |
|---|---|---|---|---|---|---|---|---|---|---|
| DCD006260BS | DCD000141SR | whole organism | Giraldez Lab, Yale | AB/TU | Sphere | — | nanog_MO | 4 | MZpou5 |
| Applied Assay ID | Biosample Replicate | Assay | Controlled By |
|---|---|---|---|
| DCD000909AA | DCD012356BR | RNA-seq_Giraldez_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|---|---|
| DCD000760SQ | DCD000933TR | Giraldez Lab, Yale | Illumina | HiSeq 2500 | — | ✘ | reverse | 76 | 02/20/2013 |