Series Summary for DCD000225SR

Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis

Survey

10.1101/gr.133009.111

GSE32900

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

True

agiess

June 9, 2016, 7:52 a.m.

Nov. 9, 2018, 2:46 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006607BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Day 5 120
Applied Assay ID Biosample Replicate Assay
DCD001338AA DCD012757BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001118SQ DCD001344TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000769DT: FASTQ
DCD003116DT: LOG GRCz10/danRer10
DCD003117DT: TSV GRCz10/danRer10
DCD003118DT: BEDGRAPH GRCz10/danRer10
DCD003120DT: BEDGRAPH GRCz10/danRer10
DCD003122DT: BEDGRAPH GRCz10/danRer10
DCD003123DT: BEDGRAPH GRCz10/danRer10
DCD003124DT: PDF GRCz10/danRer10
DCD003125DT: LOG GRCz10/danRer10
DCD003126DT: LOG GRCz10/danRer10
DCD003127DT: PDF GRCz10/danRer10
DCD003131DT: BEDGRAPH GRCz10/danRer10
DCD003181DT: BAM GRCz10/danRer10
DCD008523DT: BIGWIG GRCz10/danRer10
DCD008525DT: BIGWIG GRCz10/danRer10
DCD013815DT: LOG GRCz11/danRer11
DCD013816DT: TSV GRCz11/danRer11
DCD013820DT: TSV GRCz11/danRer11
DCD013821DT: BEDGRAPH GRCz11/danRer11
DCD013822DT: BIGWIG GRCz11/danRer11
DCD013823DT: BEDGRAPH GRCz11/danRer11
DCD013824DT: BIGWIG GRCz11/danRer11
DCD013825DT: BEDGRAPH GRCz11/danRer11
DCD013826DT: BEDGRAPH GRCz11/danRer11
DCD013827DT: LOG GRCz11/danRer11
DCD013828DT: LOG GRCz11/danRer11
DCD013829DT: PDF GRCz11/danRer11
DCD013830DT: PDF GRCz11/danRer11
DCD013835DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001125SQ DCD001341TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000768DT: FASTQ
DCD002192DT: LOG GRCz10/danRer10
DCD002193DT: TSV GRCz10/danRer10
DCD002194DT: BEDGRAPH GRCz10/danRer10
DCD002196DT: BEDGRAPH GRCz10/danRer10
DCD002197DT: BEDGRAPH GRCz10/danRer10
DCD002200DT: BAM GRCz10/danRer10
DCD003087DT: PDF GRCz10/danRer10
DCD003088DT: LOG GRCz10/danRer10
DCD003089DT: PDF GRCz10/danRer10
DCD003090DT: BEDGRAPH GRCz10/danRer10
DCD003091DT: LOG GRCz10/danRer10
DCD003094DT: BEDGRAPH GRCz10/danRer10
DCD008514DT: BIGWIG GRCz10/danRer10
DCD008515DT: BIGWIG GRCz10/danRer10
DCD013831DT: LOG GRCz11/danRer11
DCD013832DT: TSV GRCz11/danRer11
DCD013833DT: TSV GRCz11/danRer11
DCD013834DT: BEDGRAPH GRCz11/danRer11
DCD013836DT: BIGWIG GRCz11/danRer11
DCD013837DT: BIGWIG GRCz11/danRer11
DCD013838DT: BEDGRAPH GRCz11/danRer11
DCD013839DT: PDF GRCz11/danRer11
DCD013840DT: LOG GRCz11/danRer11
DCD013841DT: LOG GRCz11/danRer11
DCD013842DT: PDF GRCz11/danRer11
DCD013843DT: BEDGRAPH GRCz11/danRer11
DCD013844DT: BEDGRAPH GRCz11/danRer11
DCD013897DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006608BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Shield 6
Applied Assay ID Biosample Replicate Assay
DCD001339AA DCD012753BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001114SQ DCD001355TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000772DT: FASTQ
DCD003752DT: LOG GRCz10/danRer10
DCD003753DT: TSV GRCz10/danRer10
DCD003754DT: BEDGRAPH GRCz10/danRer10
DCD003756DT: BEDGRAPH GRCz10/danRer10
DCD003757DT: BEDGRAPH GRCz10/danRer10
DCD003759DT: PDF GRCz10/danRer10
DCD003760DT: LOG GRCz10/danRer10
DCD003761DT: BEDGRAPH GRCz10/danRer10
DCD003762DT: LOG GRCz10/danRer10
DCD003763DT: PDF GRCz10/danRer10
DCD003766DT: BEDGRAPH GRCz10/danRer10
DCD003818DT: BAM GRCz10/danRer10
DCD008510DT: BIGWIG GRCz10/danRer10
DCD008511DT: BIGWIG GRCz10/danRer10
DCD013845DT: LOG GRCz11/danRer11
DCD013846DT: TSV GRCz11/danRer11
DCD013847DT: TSV GRCz11/danRer11
DCD013848DT: BEDGRAPH GRCz11/danRer11
DCD013849DT: BEDGRAPH GRCz11/danRer11
DCD013850DT: BIGWIG GRCz11/danRer11
DCD013851DT: BEDGRAPH GRCz11/danRer11
DCD013852DT: PDF GRCz11/danRer11
DCD013853DT: LOG GRCz11/danRer11
DCD013854DT: BIGWIG GRCz11/danRer11
DCD013855DT: LOG GRCz11/danRer11
DCD013856DT: PDF GRCz11/danRer11
DCD013857DT: BEDGRAPH GRCz11/danRer11
DCD013880DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001119SQ DCD001354TR Schier Lab, Harvard University Illumina GAIIx forward 76 11/17/2011
DCD000774DT: FASTQ
DCD004100DT: LOG GRCz10/danRer10
DCD004101DT: TSV GRCz10/danRer10
DCD004102DT: BEDGRAPH GRCz10/danRer10
DCD004104DT: BEDGRAPH GRCz10/danRer10
DCD004105DT: BEDGRAPH GRCz10/danRer10
DCD004106DT: BEDGRAPH GRCz10/danRer10
DCD004107DT: PDF GRCz10/danRer10
DCD004108DT: LOG GRCz10/danRer10
DCD004109DT: PDF GRCz10/danRer10
DCD004110DT: LOG GRCz10/danRer10
DCD004111DT: BEDGRAPH GRCz10/danRer10
DCD004143DT: BAM GRCz10/danRer10
DCD008522DT: BIGWIG GRCz10/danRer10
DCD008524DT: BIGWIG GRCz10/danRer10
DCD013858DT: LOG GRCz11/danRer11
DCD013859DT: TSV GRCz11/danRer11
DCD013860DT: TSV GRCz11/danRer11
DCD013861DT: BEDGRAPH GRCz11/danRer11
DCD013862DT: BEDGRAPH GRCz11/danRer11
DCD013863DT: BEDGRAPH GRCz11/danRer11
DCD013864DT: BIGWIG GRCz11/danRer11
DCD013865DT: PDF GRCz11/danRer11
DCD013866DT: BIGWIG GRCz11/danRer11
DCD013867DT: BEDGRAPH GRCz11/danRer11
DCD013868DT: LOG GRCz11/danRer11
DCD013869DT: LOG GRCz11/danRer11
DCD013870DT: PDF GRCz11/danRer11
DCD013876DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001128SQ DCD001353TR Schier Lab, Harvard University Illumina GAIIx forward 76 11/17/2011
DCD000773DT: FASTQ
DCD004028DT: LOG GRCz10/danRer10
DCD004029DT: TSV GRCz10/danRer10
DCD004030DT: BEDGRAPH GRCz10/danRer10
DCD004032DT: BEDGRAPH GRCz10/danRer10
DCD004033DT: BEDGRAPH GRCz10/danRer10
DCD004035DT: BEDGRAPH GRCz10/danRer10
DCD004036DT: PDF GRCz10/danRer10
DCD004037DT: LOG GRCz10/danRer10
DCD004038DT: PDF GRCz10/danRer10
DCD004039DT: LOG GRCz10/danRer10
DCD004043DT: BEDGRAPH GRCz10/danRer10
DCD004080DT: BAM GRCz10/danRer10
DCD008519DT: BIGWIG GRCz10/danRer10
DCD008520DT: BIGWIG GRCz10/danRer10
DCD013871DT: LOG GRCz11/danRer11
DCD013872DT: TSV GRCz11/danRer11
DCD013873DT: TSV GRCz11/danRer11
DCD013874DT: BEDGRAPH GRCz11/danRer11
DCD013875DT: BEDGRAPH GRCz11/danRer11
DCD013877DT: BIGWIG GRCz11/danRer11
DCD013878DT: BEDGRAPH GRCz11/danRer11
DCD013879DT: BEDGRAPH GRCz11/danRer11
DCD013881DT: LOG GRCz11/danRer11
DCD013882DT: PDF GRCz11/danRer11
DCD013883DT: PDF GRCz11/danRer11
DCD013884DT: BIGWIG GRCz11/danRer11
DCD013885DT: LOG GRCz11/danRer11
DCD013888DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006609BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Bud 10
Applied Assay ID Biosample Replicate Assay
DCD001340AA DCD012755BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001121SQ DCD001350TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000771DT: FASTQ
DCD001855DT: LOG GRCz10/danRer10
DCD001856DT: TSV GRCz10/danRer10
DCD001857DT: BEDGRAPH GRCz10/danRer10
DCD001859DT: BEDGRAPH GRCz10/danRer10
DCD001860DT: BEDGRAPH GRCz10/danRer10
DCD001861DT: BEDGRAPH GRCz10/danRer10
DCD001862DT: PDF GRCz10/danRer10
DCD001863DT: LOG GRCz10/danRer10
DCD001864DT: PDF GRCz10/danRer10
DCD001865DT: LOG GRCz10/danRer10
DCD001866DT: BEDGRAPH GRCz10/danRer10
DCD001906DT: BAM GRCz10/danRer10
DCD008602DT: BIGWIG GRCz10/danRer10
DCD008603DT: BIGWIG GRCz10/danRer10
DCD013886DT: LOG GRCz11/danRer11
DCD013887DT: TSV GRCz11/danRer11
DCD013889DT: TSV GRCz11/danRer11
DCD013890DT: BEDGRAPH GRCz11/danRer11
DCD013891DT: BEDGRAPH GRCz11/danRer11
DCD013892DT: BEDGRAPH GRCz11/danRer11
DCD013893DT: PDF GRCz11/danRer11
DCD013894DT: BEDGRAPH GRCz11/danRer11
DCD013895DT: BIGWIG GRCz11/danRer11
DCD013896DT: BIGWIG GRCz11/danRer11
DCD013898DT: LOG GRCz11/danRer11
DCD013899DT: LOG GRCz11/danRer11
DCD013900DT: PDF GRCz11/danRer11
DCD013923DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001127SQ DCD001349TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000770DT: FASTQ
DCD003260DT: LOG GRCz10/danRer10
DCD003261DT: TSV GRCz10/danRer10
DCD003262DT: BEDGRAPH GRCz10/danRer10
DCD003264DT: BEDGRAPH GRCz10/danRer10
DCD003265DT: BEDGRAPH GRCz10/danRer10
DCD003266DT: BEDGRAPH GRCz10/danRer10
DCD003267DT: PDF GRCz10/danRer10
DCD003268DT: LOG GRCz10/danRer10
DCD003269DT: PDF GRCz10/danRer10
DCD003270DT: LOG GRCz10/danRer10
DCD003271DT: BEDGRAPH GRCz10/danRer10
DCD003366DT: BAM GRCz10/danRer10
DCD008530DT: BIGWIG GRCz10/danRer10
DCD008531DT: BIGWIG GRCz10/danRer10
DCD013901DT: LOG GRCz11/danRer11
DCD013902DT: TSV GRCz11/danRer11
DCD013903DT: TSV GRCz11/danRer11
DCD013904DT: BEDGRAPH GRCz11/danRer11
DCD013905DT: BEDGRAPH GRCz11/danRer11
DCD013906DT: BEDGRAPH GRCz11/danRer11
DCD013907DT: BEDGRAPH GRCz11/danRer11
DCD013908DT: PDF GRCz11/danRer11
DCD013909DT: BIGWIG GRCz11/danRer11
DCD013910DT: BIGWIG GRCz11/danRer11
DCD013911DT: LOG GRCz11/danRer11
DCD013912DT: LOG GRCz11/danRer11
DCD013913DT: PDF GRCz11/danRer11
DCD013959DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006610BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL 1k-cell 3
Applied Assay ID Biosample Replicate Assay
DCD001341AA DCD012758BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001116SQ DCD001352TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000778DT: FASTQ
DCD001774DT: LOG GRCz10/danRer10
DCD001775DT: TSV GRCz10/danRer10
DCD001776DT: BEDGRAPH GRCz10/danRer10
DCD001777DT: BEDGRAPH GRCz10/danRer10
DCD001779DT: BEDGRAPH GRCz10/danRer10
DCD001780DT: BEDGRAPH GRCz10/danRer10
DCD001781DT: PDF GRCz10/danRer10
DCD001782DT: LOG GRCz10/danRer10
DCD001783DT: PDF GRCz10/danRer10
DCD001784DT: LOG GRCz10/danRer10
DCD001785DT: BEDGRAPH GRCz10/danRer10
DCD007838DT: BAM GRCz10/danRer10
DCD008604DT: BIGWIG GRCz10/danRer10
DCD008605DT: BIGWIG GRCz10/danRer10
DCD013914DT: LOG GRCz11/danRer11
DCD013915DT: TSV GRCz11/danRer11
DCD013916DT: TSV GRCz11/danRer11
DCD013917DT: BEDGRAPH GRCz11/danRer11
DCD013918DT: BEDGRAPH GRCz11/danRer11
DCD013919DT: BEDGRAPH GRCz11/danRer11
DCD013920DT: BIGWIG GRCz11/danRer11
DCD013921DT: BIGWIG GRCz11/danRer11
DCD013922DT: PDF GRCz11/danRer11
DCD013924DT: BEDGRAPH GRCz11/danRer11
DCD013925DT: LOG GRCz11/danRer11
DCD013927DT: LOG GRCz11/danRer11
DCD013928DT: PDF GRCz11/danRer11
DCD013961DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001122SQ DCD001351TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000777DT: FASTQ
DCD003164DT: LOG GRCz10/danRer10
DCD003165DT: TSV GRCz10/danRer10
DCD003167DT: BEDGRAPH GRCz10/danRer10
DCD003168DT: BEDGRAPH GRCz10/danRer10
DCD003169DT: BEDGRAPH GRCz10/danRer10
DCD003170DT: BEDGRAPH GRCz10/danRer10
DCD003171DT: PDF GRCz10/danRer10
DCD003172DT: LOG GRCz10/danRer10
DCD003173DT: BEDGRAPH GRCz10/danRer10
DCD003174DT: PDF GRCz10/danRer10
DCD003175DT: LOG GRCz10/danRer10
DCD003275DT: BAM GRCz10/danRer10
DCD008542DT: BIGWIG GRCz10/danRer10
DCD008543DT: BIGWIG GRCz10/danRer10
DCD013926DT: LOG GRCz11/danRer11
DCD013929DT: TSV GRCz11/danRer11
DCD013930DT: TSV GRCz11/danRer11
DCD013931DT: BEDGRAPH GRCz11/danRer11
DCD013932DT: BEDGRAPH GRCz11/danRer11
DCD013933DT: BIGWIG GRCz11/danRer11
DCD013934DT: BEDGRAPH GRCz11/danRer11
DCD013935DT: BEDGRAPH GRCz11/danRer11
DCD013936DT: BIGWIG GRCz11/danRer11
DCD013937DT: PDF GRCz11/danRer11
DCD013938DT: LOG GRCz11/danRer11
DCD013939DT: PDF GRCz11/danRer11
DCD013940DT: LOG GRCz11/danRer11
DCD013973DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006611BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Dome 4.33
Applied Assay ID Biosample Replicate Assay
DCD001342AA DCD012756BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001126SQ DCD001348TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000775DT: FASTQ
DCD004830DT: LOG GRCz10/danRer10
DCD004831DT: BEDGRAPH GRCz10/danRer10
DCD004832DT: TSV GRCz10/danRer10
DCD004833DT: BEDGRAPH GRCz10/danRer10
DCD004834DT: BEDGRAPH GRCz10/danRer10
DCD004835DT: PDF GRCz10/danRer10
DCD004836DT: BEDGRAPH GRCz10/danRer10
DCD004837DT: LOG GRCz10/danRer10
DCD004838DT: PDF GRCz10/danRer10
DCD004839DT: LOG GRCz10/danRer10
DCD004844DT: BEDGRAPH GRCz10/danRer10
DCD004892DT: BAM GRCz10/danRer10
DCD008564DT: BIGWIG GRCz10/danRer10
DCD008565DT: BIGWIG GRCz10/danRer10
DCD013954DT: LOG GRCz11/danRer11
DCD013955DT: TSV GRCz11/danRer11
DCD013956DT: TSV GRCz11/danRer11
DCD013957DT: BEDGRAPH GRCz11/danRer11
DCD013958DT: BEDGRAPH GRCz11/danRer11
DCD013960DT: BEDGRAPH GRCz11/danRer11
DCD013962DT: BIGWIG GRCz11/danRer11
DCD013963DT: BEDGRAPH GRCz11/danRer11
DCD013964DT: LOG GRCz11/danRer11
DCD013965DT: PDF GRCz11/danRer11
DCD013966DT: BIGWIG GRCz11/danRer11
DCD013967DT: LOG GRCz11/danRer11
DCD013968DT: PDF GRCz11/danRer11
DCD014008DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001120SQ DCD001347TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000776DT: FASTQ
DCD001599DT: LOG GRCz10/danRer10
DCD001601DT: TSV GRCz10/danRer10
DCD001602DT: BEDGRAPH GRCz10/danRer10
DCD001603DT: BEDGRAPH GRCz10/danRer10
DCD001604DT: BEDGRAPH GRCz10/danRer10
DCD001605DT: PDF GRCz10/danRer10
DCD001606DT: LOG GRCz10/danRer10
DCD001607DT: PDF GRCz10/danRer10
DCD001608DT: LOG GRCz10/danRer10
DCD001609DT: BEDGRAPH GRCz10/danRer10
DCD001613DT: BEDGRAPH GRCz10/danRer10
DCD001667DT: BAM GRCz10/danRer10
DCD008584DT: BIGWIG GRCz10/danRer10
DCD008585DT: BIGWIG GRCz10/danRer10
DCD013941DT: LOG GRCz11/danRer11
DCD013942DT: TSV GRCz11/danRer11
DCD013943DT: TSV GRCz11/danRer11
DCD013944DT: BEDGRAPH GRCz11/danRer11
DCD013945DT: BEDGRAPH GRCz11/danRer11
DCD013946DT: BEDGRAPH GRCz11/danRer11
DCD013947DT: BIGWIG GRCz11/danRer11
DCD013948DT: BEDGRAPH GRCz11/danRer11
DCD013949DT: BIGWIG GRCz11/danRer11
DCD013950DT: PDF GRCz11/danRer11
DCD013951DT: LOG GRCz11/danRer11
DCD013952DT: PDF GRCz11/danRer11
DCD013953DT: LOG GRCz11/danRer11
DCD013983DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006612BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD001343AA DCD012754BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001123SQ DCD001340TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000781DT: FASTQ
DCD004841DT: LOG GRCz10/danRer10
DCD004842DT: TSV GRCz10/danRer10
DCD004843DT: BEDGRAPH GRCz10/danRer10
DCD004845DT: PDF GRCz10/danRer10
DCD004846DT: LOG GRCz10/danRer10
DCD004847DT: PDF GRCz10/danRer10
DCD004848DT: LOG GRCz10/danRer10
DCD004849DT: BEDGRAPH GRCz10/danRer10
DCD004851DT: BEDGRAPH GRCz10/danRer10
DCD004854DT: BEDGRAPH GRCz10/danRer10
DCD004855DT: BEDGRAPH GRCz10/danRer10
DCD004893DT: BAM GRCz10/danRer10
DCD008554DT: BIGWIG GRCz10/danRer10
DCD008555DT: BIGWIG GRCz10/danRer10
DCD013969DT: LOG GRCz11/danRer11
DCD013970DT: TSV GRCz11/danRer11
DCD013971DT: TSV GRCz11/danRer11
DCD013972DT: BEDGRAPH GRCz11/danRer11
DCD013974DT: BEDGRAPH GRCz11/danRer11
DCD013975DT: BIGWIG GRCz11/danRer11
DCD013976DT: BEDGRAPH GRCz11/danRer11
DCD013977DT: BEDGRAPH GRCz11/danRer11
DCD013978DT: PDF GRCz11/danRer11
DCD013979DT: BIGWIG GRCz11/danRer11
DCD013980DT: PDF GRCz11/danRer11
DCD013981DT: LOG GRCz11/danRer11
DCD013982DT: LOG GRCz11/danRer11
DCD014092DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006613BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Prim-15 28
Applied Assay ID Biosample Replicate Assay
DCD001344AA DCD012759BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001129SQ DCD001346TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000779DT: FASTQ
DCD003308DT: LOG GRCz10/danRer10
DCD003309DT: TSV GRCz10/danRer10
DCD003310DT: BEDGRAPH GRCz10/danRer10
DCD003311DT: BEDGRAPH GRCz10/danRer10
DCD003313DT: BEDGRAPH GRCz10/danRer10
DCD003314DT: BEDGRAPH GRCz10/danRer10
DCD003315DT: PDF GRCz10/danRer10
DCD003316DT: LOG GRCz10/danRer10
DCD003317DT: PDF GRCz10/danRer10
DCD003318DT: LOG GRCz10/danRer10
DCD003319DT: BEDGRAPH GRCz10/danRer10
DCD003408DT: BAM GRCz10/danRer10
DCD008518DT: BIGWIG GRCz10/danRer10
DCD008521DT: BIGWIG GRCz10/danRer10
DCD013997DT: LOG GRCz11/danRer11
DCD013998DT: TSV GRCz11/danRer11
DCD013999DT: TSV GRCz11/danRer11
DCD014000DT: BEDGRAPH GRCz11/danRer11
DCD014001DT: BEDGRAPH GRCz11/danRer11
DCD014002DT: BEDGRAPH GRCz11/danRer11
DCD014003DT: BEDGRAPH GRCz11/danRer11
DCD014004DT: BIGWIG GRCz11/danRer11
DCD014005DT: BIGWIG GRCz11/danRer11
DCD014006DT: PDF GRCz11/danRer11
DCD014007DT: LOG GRCz11/danRer11
DCD014009DT: LOG GRCz11/danRer11
DCD014010DT: PDF GRCz11/danRer11
DCD014042DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001115SQ DCD001345TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000780DT: FASTQ
DCD001843DT: LOG GRCz10/danRer10
DCD001844DT: TSV GRCz10/danRer10
DCD001845DT: BEDGRAPH GRCz10/danRer10
DCD001847DT: BEDGRAPH GRCz10/danRer10
DCD001848DT: BEDGRAPH GRCz10/danRer10
DCD001850DT: BEDGRAPH GRCz10/danRer10
DCD001851DT: PDF GRCz10/danRer10
DCD001852DT: LOG GRCz10/danRer10
DCD001853DT: PDF GRCz10/danRer10
DCD001854DT: LOG GRCz10/danRer10
DCD001858DT: BEDGRAPH GRCz10/danRer10
DCD001897DT: BAM GRCz10/danRer10
DCD008558DT: BIGWIG GRCz10/danRer10
DCD008559DT: BIGWIG GRCz10/danRer10
DCD013984DT: LOG GRCz11/danRer11
DCD013985DT: TSV GRCz11/danRer11
DCD013986DT: TSV GRCz11/danRer11
DCD013987DT: BEDGRAPH GRCz11/danRer11
DCD013988DT: BEDGRAPH GRCz11/danRer11
DCD013989DT: BEDGRAPH GRCz11/danRer11
DCD013990DT: BIGWIG GRCz11/danRer11
DCD013991DT: BIGWIG GRCz11/danRer11
DCD013992DT: PDF GRCz11/danRer11
DCD013993DT: LOG GRCz11/danRer11
DCD013994DT: PDF GRCz11/danRer11
DCD013995DT: LOG GRCz11/danRer11
DCD013996DT: BEDGRAPH GRCz11/danRer11
DCD014031DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006614BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL 4-cell 1
Applied Assay ID Biosample Replicate Assay
DCD001345AA DCD012760BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001124SQ DCD001343TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000782DT: FASTQ
DCD003500DT: LOG GRCz10/danRer10
DCD003501DT: TSV GRCz10/danRer10
DCD003502DT: BEDGRAPH GRCz10/danRer10
DCD003504DT: BEDGRAPH GRCz10/danRer10
DCD003505DT: BEDGRAPH GRCz10/danRer10
DCD003507DT: PDF GRCz10/danRer10
DCD003508DT: BEDGRAPH GRCz10/danRer10
DCD003509DT: LOG GRCz10/danRer10
DCD003510DT: PDF GRCz10/danRer10
DCD003511DT: BEDGRAPH GRCz10/danRer10
DCD003512DT: LOG GRCz10/danRer10
DCD003601DT: BAM GRCz10/danRer10
DCD008528DT: BIGWIG GRCz10/danRer10
DCD008529DT: BIGWIG GRCz10/danRer10
DCD014024DT: LOG GRCz11/danRer11
DCD014025DT: TSV GRCz11/danRer11
DCD014026DT: TSV GRCz11/danRer11
DCD014027DT: BEDGRAPH GRCz11/danRer11
DCD014028DT: BEDGRAPH GRCz11/danRer11
DCD014029DT: BEDGRAPH GRCz11/danRer11
DCD014030DT: BEDGRAPH GRCz11/danRer11
DCD014032DT: BIGWIG GRCz11/danRer11
DCD014033DT: BIGWIG GRCz11/danRer11
DCD014034DT: LOG GRCz11/danRer11
DCD014035DT: PDF GRCz11/danRer11
DCD014036DT: LOG GRCz11/danRer11
DCD014037DT: PDF GRCz11/danRer11
DCD014068DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001117SQ DCD001342TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000783DT: FASTQ
DCD003441DT: LOG GRCz10/danRer10
DCD003442DT: TSV GRCz10/danRer10
DCD003443DT: BEDGRAPH GRCz10/danRer10
DCD003444DT: BEDGRAPH GRCz10/danRer10
DCD003445DT: BEDGRAPH GRCz10/danRer10
DCD003447DT: PDF GRCz10/danRer10
DCD003448DT: LOG GRCz10/danRer10
DCD003449DT: PDF GRCz10/danRer10
DCD003450DT: LOG GRCz10/danRer10
DCD003451DT: BEDGRAPH GRCz10/danRer10
DCD003453DT: BEDGRAPH GRCz10/danRer10
DCD003506DT: BAM GRCz10/danRer10
DCD008552DT: BIGWIG GRCz10/danRer10
DCD008553DT: BIGWIG GRCz10/danRer10
DCD014011DT: LOG GRCz11/danRer11
DCD014012DT: TSV GRCz11/danRer11
DCD014013DT: TSV GRCz11/danRer11
DCD014014DT: BEDGRAPH GRCz11/danRer11
DCD014015DT: BEDGRAPH GRCz11/danRer11
DCD014016DT: BEDGRAPH GRCz11/danRer11
DCD014017DT: BIGWIG GRCz11/danRer11
DCD014018DT: BIGWIG GRCz11/danRer11
DCD014019DT: BEDGRAPH GRCz11/danRer11
DCD014020DT: PDF GRCz11/danRer11
DCD014021DT: LOG GRCz11/danRer11
DCD014022DT: LOG GRCz11/danRer11
DCD014023DT: PDF GRCz11/danRer11
DCD014040DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007328BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Shield 6
Applied Assay ID Biosample Replicate Assay
DCD002786AA DCD014196BR ChIP-seq_Schier_Lab_Input_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003121SQ DCD003225TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 36 11/17/2018
DCD017433DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002787AA DCD014196BR ChIP-seq_Schier_Lab_H3K4me3_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Paired End Strand Maximum Read Length Sequencing Date
DCD003120SQ DCD003224TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 36 11/17/2018
DCD017435DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002788AA DCD014196BR ChIP-seq_Schier_Lab_H3K27me3_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003123SQ DCD003226TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 36 11/17/2018
DCD017434DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By Anatomical Term Treatment Hours Post Fertilization Mutation Description
DCD007329BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Long-pec 48
Applied Assay ID Biosample Replicate Assay Controlled By
DCD002789AA DCD014197BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD003122SQ DCD003228TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2018
DCD017436DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Paired End Strand Maximum Read Length Sequencing Date
DCD003124SQ DCD003227TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2018
DCD017437DT: FASTQ