Series Summary for DCD000227SR

DNA methylation reprogramming during early zebrafish embryo development

Survey

10.1016/j.cell.2013.04.041

GSE44075

5-methylcytosine is a major epigenetic modification that is sometimes called ‘‘the fifth nucleotide.’’ However, our knowledge of how offspring inherit the DNA methylome from parents is limited. We generated nine single-base resolution DNA methylomes, including zebrafish gametes and early embryos. The oocyte methylome is significantly hypomethylated compared to sperm. Strikingly, the paternal DNA methylation pattern is maintained throughout early embryogenesis. The maternal DNA methylation pattern is maintained until the 16-cell stage. Then, the oocyte methylome is gradually discarded through cell division and is progressively reprogrammed to a pattern similar to that of the sperm methylome. The passive demethylation rate and the de novo methylation rate are similar in the maternal DNA. By the midblastula stage, the embryo’s methylome is virtually identical to the sperm methylome. Moreover, inheritance of the sperm methylome facilitates the epigenetic regulation of embryogenesis. Therefore, besides DNA sequences, sperm DNA methylome is also inherited in zebrafish early embryos.

True

zhuwei

June 11, 2016, 10:16 p.m.

Feb. 12, 2019, 12:58 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006624BS DCD000227SR tissue Liu Lab, Beijing Institute of Genomics, CAS TU 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD001355AA DCD012875BR MeDIP-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001139SQ DCD001365TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000793DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD001351AA DCD012879BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001135SQ DCD001361TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000789DT: FASTQ
DCD006805DT: LOG GRCz10/danRer10
DCD006807DT: LOG GRCz10/danRer10
DCD006808DT: LOG GRCz10/danRer10
DCD006809DT: LOG GRCz10/danRer10
DCD006811DT: LOG GRCz10/danRer10
DCD006812DT: LOG GRCz10/danRer10
DCD006813DT: BEDGRAPH GRCz10/danRer10
DCD006814DT: BED GRCz10/danRer10
DCD006816DT: BIGWIG GRCz10/danRer10
DCD006817DT: BED GRCz10/danRer10
DCD006818DT: BIGBED GRCz10/danRer10
DCD006820DT: BIGBED GRCz10/danRer10
DCD006822DT: BED GRCz10/danRer10
DCD006826DT: BIGBED GRCz10/danRer10
DCD006833DT: BAM GRCz10/danRer10
DCD018602DT: BEDGRAPH GRCz10/danRer10
DCD018603DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001350AA DCD012880BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001134SQ DCD001360TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000788DT: FASTQ
DCD006791DT: LOG GRCz10/danRer10
DCD006792DT: LOG GRCz10/danRer10
DCD006793DT: LOG GRCz10/danRer10
DCD006794DT: LOG GRCz10/danRer10
DCD006796DT: LOG GRCz10/danRer10
DCD006797DT: LOG GRCz10/danRer10
DCD006799DT: BEDGRAPH GRCz10/danRer10
DCD006800DT: BIGBED GRCz10/danRer10
DCD006801DT: BED GRCz10/danRer10
DCD006802DT: BIGWIG GRCz10/danRer10
DCD006804DT: BED GRCz10/danRer10
DCD006806DT: BIGBED GRCz10/danRer10
DCD006810DT: BED GRCz10/danRer10
DCD006815DT: BIGBED GRCz10/danRer10
DCD006828DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001349AA DCD012881BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001133SQ DCD001359TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000787DT: FASTQ
DCD006777DT: LOG GRCz10/danRer10
DCD006778DT: LOG GRCz10/danRer10
DCD006779DT: LOG GRCz10/danRer10
DCD006781DT: LOG GRCz10/danRer10
DCD006782DT: LOG GRCz10/danRer10
DCD006784DT: LOG GRCz10/danRer10
DCD006785DT: BEDGRAPH GRCz10/danRer10
DCD006786DT: BED GRCz10/danRer10
DCD006787DT: BIGWIG GRCz10/danRer10
DCD006788DT: BED GRCz10/danRer10
DCD006790DT: BIGBED GRCz10/danRer10
DCD006795DT: BIGBED GRCz10/danRer10
DCD006798DT: BED GRCz10/danRer10
DCD006803DT: BIGBED GRCz10/danRer10
DCD006829DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001348AA DCD012882BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001132SQ DCD001358TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000786DT: FASTQ
DCD006766DT: LOG GRCz10/danRer10
DCD006767DT: LOG GRCz10/danRer10
DCD006768DT: LOG GRCz10/danRer10
DCD006769DT: LOG GRCz10/danRer10
DCD006770DT: LOG GRCz10/danRer10
DCD006771DT: BIGBED GRCz10/danRer10
DCD006772DT: BED GRCz10/danRer10
DCD006773DT: BED GRCz10/danRer10
DCD006774DT: BIGWIG GRCz10/danRer10
DCD006775DT: LOG GRCz10/danRer10
DCD006776DT: BEDGRAPH GRCz10/danRer10
DCD006780DT: BIGBED GRCz10/danRer10
DCD006783DT: BED GRCz10/danRer10
DCD006789DT: BIGBED GRCz10/danRer10
DCD006819DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001346AA DCD012884BR RNA-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001130SQ DCD001356TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000784DT: FASTQ
DCD001586DT: LOG GRCz10/danRer10
DCD001587DT: TSV GRCz10/danRer10
DCD001589DT: BEDGRAPH GRCz10/danRer10
DCD001592DT: BEDGRAPH GRCz10/danRer10
DCD001593DT: BEDGRAPH GRCz10/danRer10
DCD001594DT: PDF GRCz10/danRer10
DCD001595DT: LOG GRCz10/danRer10
DCD001596DT: PDF GRCz10/danRer10
DCD001597DT: BEDGRAPH GRCz10/danRer10
DCD001598DT: LOG GRCz10/danRer10
DCD001600DT: BEDGRAPH GRCz10/danRer10
DCD001645DT: BAM GRCz10/danRer10
DCD008721DT: BIGWIG GRCz10/danRer10
DCD013336DT: LOG GRCz11/danRer11
DCD013338DT: TSV GRCz11/danRer11
DCD013339DT: TSV GRCz11/danRer11
DCD013340DT: PDF GRCz11/danRer11
DCD013341DT: BIGWIG GRCz11/danRer11
DCD013342DT: BEDGRAPH GRCz11/danRer11
DCD013343DT: BEDGRAPH GRCz11/danRer11
DCD013344DT: LOG GRCz11/danRer11
DCD013345DT: LOG GRCz11/danRer11
DCD013346DT: PDF GRCz11/danRer11
DCD013348DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006625BS DCD000227SR whole organism Liu Lab, Beijing Institute of Genomics, CAS TU 2-cell 0.75
Applied Assay ID Biosample Replicate Assay
DCD001356AA DCD012874BR MeDIP-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001140SQ DCD001366TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000794DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006626BS DCD000227SR whole organism Liu Lab, Beijing Institute of Genomics, CAS TU 16-cell 1.5
Applied Assay ID Biosample Replicate Assay
DCD001360AA DCD012870BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001144SQ DCD001370TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000798DT: FASTQ
DCD006882DT: LOG GRCz10/danRer10
DCD006883DT: LOG GRCz10/danRer10
DCD006884DT: LOG GRCz10/danRer10
DCD006885DT: LOG GRCz10/danRer10
DCD006886DT: LOG GRCz10/danRer10
DCD006887DT: LOG GRCz10/danRer10
DCD006889DT: BEDGRAPH GRCz10/danRer10
DCD006891DT: BIGWIG GRCz10/danRer10
DCD006892DT: BED GRCz10/danRer10
DCD006893DT: BED GRCz10/danRer10
DCD006894DT: BIGBED GRCz10/danRer10
DCD006897DT: BIGBED GRCz10/danRer10
DCD006901DT: BED GRCz10/danRer10
DCD006907DT: BIGBED GRCz10/danRer10
DCD006933DT: BAM GRCz10/danRer10
DCD018619DT: BEDGRAPH GRCz10/danRer10
DCD018622DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001359AA DCD012871BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001143SQ DCD001369TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000797DT: FASTQ
DCD006866DT: LOG GRCz10/danRer10
DCD006869DT: LOG GRCz10/danRer10
DCD006870DT: LOG GRCz10/danRer10
DCD006871DT: LOG GRCz10/danRer10
DCD006872DT: LOG GRCz10/danRer10
DCD006875DT: BIGWIG GRCz10/danRer10
DCD006876DT: BEDGRAPH GRCz10/danRer10
DCD006877DT: BED GRCz10/danRer10
DCD006878DT: LOG GRCz10/danRer10
DCD006879DT: BED GRCz10/danRer10
DCD006881DT: BIGBED GRCz10/danRer10
DCD006888DT: BIGBED GRCz10/danRer10
DCD006890DT: BED GRCz10/danRer10
DCD006895DT: BIGBED GRCz10/danRer10
DCD006924DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001358AA DCD012872BR MeDIP-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001142SQ DCD001368TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000796DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD001357AA DCD012873BR MeDIP-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001141SQ DCD001367TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000795DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006627BS DCD000227SR whole organism Liu Lab, Beijing Institute of Genomics, CAS TU 32-cell 1.75
Applied Assay ID Biosample Replicate Assay
DCD001365AA DCD012865BR TAB-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001149SQ DCD001375TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000803DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD001364AA DCD012866BR TAB-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001148SQ DCD001374TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000802DT: FASTQ
DCD018612DT: BEDGRAPH GRCz10/danRer10
DCD018613DT: BEDGRAPH GRCz10/danRer10
DCD018614DT: BIGWIG GRCz10/danRer10
DCD018615DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001363AA DCD012867BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001147SQ DCD001373TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000801DT: FASTQ
DCD006926DT: LOG GRCz10/danRer10
DCD006928DT: LOG GRCz10/danRer10
DCD006929DT: LOG GRCz10/danRer10
DCD006930DT: LOG GRCz10/danRer10
DCD006932DT: LOG GRCz10/danRer10
DCD006934DT: LOG GRCz10/danRer10
DCD006935DT: BED GRCz10/danRer10
DCD006936DT: BIGWIG GRCz10/danRer10
DCD006937DT: BEDGRAPH GRCz10/danRer10
DCD006938DT: BED GRCz10/danRer10
DCD006939DT: BIGBED GRCz10/danRer10
DCD006940DT: BIGBED GRCz10/danRer10
DCD006942DT: BED GRCz10/danRer10
DCD006948DT: BIGBED GRCz10/danRer10
DCD006980DT: BAM GRCz10/danRer10
DCD018618DT: BEDGRAPH GRCz10/danRer10
DCD018621DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001362AA DCD012868BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001146SQ DCD001372TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000800DT: FASTQ
DCD006911DT: LOG GRCz10/danRer10
DCD006913DT: LOG GRCz10/danRer10
DCD006914DT: LOG GRCz10/danRer10
DCD006915DT: LOG GRCz10/danRer10
DCD006917DT: LOG GRCz10/danRer10
DCD006918DT: LOG GRCz10/danRer10
DCD006919DT: BIGWIG GRCz10/danRer10
DCD006920DT: BEDGRAPH GRCz10/danRer10
DCD006921DT: BED GRCz10/danRer10
DCD006922DT: BIGBED GRCz10/danRer10
DCD006923DT: BED GRCz10/danRer10
DCD006925DT: BIGBED GRCz10/danRer10
DCD006927DT: BED GRCz10/danRer10
DCD006931DT: BIGBED GRCz10/danRer10
DCD006963DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001361AA DCD012869BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001145SQ DCD001371TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000799DT: FASTQ
DCD006896DT: LOG GRCz10/danRer10
DCD006898DT: LOG GRCz10/danRer10
DCD006899DT: LOG GRCz10/danRer10
DCD006900DT: LOG GRCz10/danRer10
DCD006902DT: LOG GRCz10/danRer10
DCD006903DT: LOG GRCz10/danRer10
DCD006904DT: BEDGRAPH GRCz10/danRer10
DCD006905DT: BIGWIG GRCz10/danRer10
DCD006906DT: BIGBED GRCz10/danRer10
DCD006908DT: BED GRCz10/danRer10
DCD006909DT: BED GRCz10/danRer10
DCD006910DT: BIGBED GRCz10/danRer10
DCD006912DT: BED GRCz10/danRer10
DCD006916DT: BIGBED GRCz10/danRer10
DCD006946DT: BAM GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006628BS DCD000227SR whole organism Liu Lab, Beijing Institute of Genomics, CAS TU 64-cell 2
Applied Assay ID Biosample Replicate Assay
DCD001369AA DCD012861BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001153SQ DCD001379TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000807DT: FASTQ
DCD006986DT: LOG GRCz10/danRer10
DCD006988DT: LOG GRCz10/danRer10
DCD006989DT: LOG GRCz10/danRer10
DCD006990DT: LOG GRCz10/danRer10
DCD006992DT: LOG GRCz10/danRer10
DCD006994DT: BEDGRAPH GRCz10/danRer10
DCD006995DT: LOG GRCz10/danRer10
DCD006996DT: BIGWIG GRCz10/danRer10
DCD006998DT: BIGBED GRCz10/danRer10
DCD006999DT: BED GRCz10/danRer10
DCD007000DT: BED GRCz10/danRer10
DCD007002DT: BIGBED GRCz10/danRer10
DCD007006DT: BED GRCz10/danRer10
DCD007010DT: BIGBED GRCz10/danRer10
DCD007030DT: BAM GRCz10/danRer10
DCD018609DT: BEDGRAPH GRCz10/danRer10
DCD018616DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001368AA DCD012862BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001152SQ DCD001378TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000806DT: FASTQ
DCD006971DT: LOG GRCz10/danRer10
DCD006973DT: LOG GRCz10/danRer10
DCD006974DT: LOG GRCz10/danRer10
DCD006975DT: LOG GRCz10/danRer10
DCD006977DT: LOG GRCz10/danRer10
DCD006978DT: LOG GRCz10/danRer10
DCD006979DT: BEDGRAPH GRCz10/danRer10
DCD006981DT: BIGWIG GRCz10/danRer10
DCD006982DT: BED GRCz10/danRer10
DCD006983DT: BED GRCz10/danRer10
DCD006984DT: BIGBED GRCz10/danRer10
DCD006985DT: BIGBED GRCz10/danRer10
DCD006993DT: BED GRCz10/danRer10
DCD006997DT: BIGBED GRCz10/danRer10
DCD007021DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001367AA DCD012863BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001151SQ DCD001377TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000805DT: FASTQ
DCD006956DT: LOG GRCz10/danRer10
DCD006958DT: LOG GRCz10/danRer10
DCD006959DT: LOG GRCz10/danRer10
DCD006960DT: LOG GRCz10/danRer10
DCD006962DT: LOG GRCz10/danRer10
DCD006964DT: LOG GRCz10/danRer10
DCD006965DT: BEDGRAPH GRCz10/danRer10
DCD006966DT: BIGWIG GRCz10/danRer10
DCD006967DT: BED GRCz10/danRer10
DCD006968DT: BED GRCz10/danRer10
DCD006969DT: BIGBED GRCz10/danRer10
DCD006970DT: BIGBED GRCz10/danRer10
DCD006972DT: BED GRCz10/danRer10
DCD006976DT: BIGBED GRCz10/danRer10
DCD006991DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001366AA DCD012864BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001150SQ DCD001376TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000804DT: FASTQ
DCD006941DT: LOG GRCz10/danRer10
DCD006943DT: LOG GRCz10/danRer10
DCD006944DT: LOG GRCz10/danRer10
DCD006945DT: LOG GRCz10/danRer10
DCD006947DT: LOG GRCz10/danRer10
DCD006949DT: LOG GRCz10/danRer10
DCD006950DT: BIGWIG GRCz10/danRer10
DCD006951DT: BEDGRAPH GRCz10/danRer10
DCD006952DT: BED GRCz10/danRer10
DCD006953DT: BED GRCz10/danRer10
DCD006954DT: BIGBED GRCz10/danRer10
DCD006955DT: BIGBED GRCz10/danRer10
DCD006957DT: BED GRCz10/danRer10
DCD006961DT: BIGBED GRCz10/danRer10
DCD006987DT: BAM GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006629BS DCD000227SR whole organism Liu Lab, Beijing Institute of Genomics, CAS TU 128-cell 2.25
Applied Assay ID Biosample Replicate Assay
DCD001373AA DCD012857BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001157SQ DCD001383TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000811DT: FASTQ
DCD007046DT: LOG GRCz10/danRer10
DCD007048DT: LOG GRCz10/danRer10
DCD007049DT: LOG GRCz10/danRer10
DCD007050DT: LOG GRCz10/danRer10
DCD007052DT: LOG GRCz10/danRer10
DCD007054DT: LOG GRCz10/danRer10
DCD007056DT: BED GRCz10/danRer10
DCD007057DT: BEDGRAPH GRCz10/danRer10
DCD007058DT: BED GRCz10/danRer10
DCD007059DT: BIGWIG GRCz10/danRer10
DCD007060DT: BIGBED GRCz10/danRer10
DCD007062DT: BIGBED GRCz10/danRer10
DCD007066DT: BED GRCz10/danRer10
DCD007069DT: BIGBED GRCz10/danRer10
DCD007084DT: BAM GRCz10/danRer10
DCD018607DT: BEDGRAPH GRCz10/danRer10
DCD018610DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001372AA DCD012858BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001156SQ DCD001382TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000810DT: FASTQ
DCD007031DT: LOG GRCz10/danRer10
DCD007034DT: LOG GRCz10/danRer10
DCD007035DT: LOG GRCz10/danRer10
DCD007036DT: LOG GRCz10/danRer10
DCD007037DT: LOG GRCz10/danRer10
DCD007039DT: BEDGRAPH GRCz10/danRer10
DCD007040DT: LOG GRCz10/danRer10
DCD007041DT: BIGBED GRCz10/danRer10
DCD007043DT: BED GRCz10/danRer10
DCD007044DT: BIGWIG GRCz10/danRer10
DCD007045DT: BED GRCz10/danRer10
DCD007047DT: BIGBED GRCz10/danRer10
DCD007051DT: BED GRCz10/danRer10
DCD007055DT: BIGBED GRCz10/danRer10
DCD007083DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001371AA DCD012859BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001155SQ DCD001381TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000809DT: FASTQ
DCD007016DT: LOG GRCz10/danRer10
DCD007018DT: LOG GRCz10/danRer10
DCD007019DT: LOG GRCz10/danRer10
DCD007020DT: LOG GRCz10/danRer10
DCD007022DT: LOG GRCz10/danRer10
DCD007024DT: LOG GRCz10/danRer10
DCD007025DT: BEDGRAPH GRCz10/danRer10
DCD007026DT: BIGWIG GRCz10/danRer10
DCD007027DT: BED GRCz10/danRer10
DCD007028DT: BED GRCz10/danRer10
DCD007029DT: BIGBED GRCz10/danRer10
DCD007033DT: BIGBED GRCz10/danRer10
DCD007038DT: BED GRCz10/danRer10
DCD007042DT: BIGBED GRCz10/danRer10
DCD007053DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001370AA DCD012860BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001154SQ DCD001380TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000808DT: FASTQ
DCD007001DT: LOG GRCz10/danRer10
DCD007003DT: LOG GRCz10/danRer10
DCD007004DT: LOG GRCz10/danRer10
DCD007005DT: LOG GRCz10/danRer10
DCD007007DT: LOG GRCz10/danRer10
DCD007008DT: LOG GRCz10/danRer10
DCD007009DT: BEDGRAPH GRCz10/danRer10
DCD007011DT: BIGWIG GRCz10/danRer10
DCD007012DT: BED GRCz10/danRer10
DCD007013DT: BED GRCz10/danRer10
DCD007014DT: BIGBED GRCz10/danRer10
DCD007015DT: BIGBED GRCz10/danRer10
DCD007017DT: BED GRCz10/danRer10
DCD007023DT: BIGBED GRCz10/danRer10
DCD007032DT: BAM GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006630BS DCD000227SR whole organism Liu Lab, Beijing Institute of Genomics, CAS TU 1k-cell 3
Applied Assay ID Biosample Replicate Assay
DCD001379AA DCD012851BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001163SQ DCD001389TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000817DT: FASTQ
DCD007106DT: LOG GRCz10/danRer10
DCD007108DT: LOG GRCz10/danRer10
DCD007109DT: LOG GRCz10/danRer10
DCD007110DT: LOG GRCz10/danRer10
DCD007112DT: LOG GRCz10/danRer10
DCD007113DT: LOG GRCz10/danRer10
DCD007115DT: BEDGRAPH GRCz10/danRer10
DCD007116DT: BED GRCz10/danRer10
DCD007117DT: BIGBED GRCz10/danRer10
DCD007118DT: BED GRCz10/danRer10
DCD007120DT: BIGWIG GRCz10/danRer10
DCD007122DT: BIGBED GRCz10/danRer10
DCD007126DT: BED GRCz10/danRer10
DCD007129DT: BIGBED GRCz10/danRer10
DCD007137DT: BAM GRCz10/danRer10
DCD018611DT: BIGWIG GRCz10/danRer10
DCD018617DT: BEDGRAPH GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001378AA DCD012852BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001162SQ DCD001388TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000816DT: FASTQ
DCD007091DT: LOG GRCz10/danRer10
DCD007093DT: LOG GRCz10/danRer10
DCD007094DT: LOG GRCz10/danRer10
DCD007095DT: LOG GRCz10/danRer10
DCD007097DT: LOG GRCz10/danRer10
DCD007100DT: LOG GRCz10/danRer10
DCD007101DT: BIGWIG GRCz10/danRer10
DCD007102DT: BEDGRAPH GRCz10/danRer10
DCD007103DT: BED GRCz10/danRer10
DCD007104DT: BIGBED GRCz10/danRer10
DCD007105DT: BED GRCz10/danRer10
DCD007111DT: BIGBED GRCz10/danRer10
DCD007114DT: BED GRCz10/danRer10
DCD007119DT: BIGBED GRCz10/danRer10
DCD007167DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001377AA DCD012853BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001161SQ DCD001387TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000815DT: FASTQ
DCD007076DT: LOG GRCz10/danRer10
DCD007078DT: LOG GRCz10/danRer10
DCD007079DT: LOG GRCz10/danRer10
DCD007080DT: LOG GRCz10/danRer10
DCD007082DT: LOG GRCz10/danRer10
DCD007085DT: BAM GRCz10/danRer10
DCD007087DT: LOG GRCz10/danRer10
DCD007088DT: BED GRCz10/danRer10
DCD007089DT: BIGBED GRCz10/danRer10
DCD007090DT: BED GRCz10/danRer10
DCD007092DT: BIGBED GRCz10/danRer10
DCD007096DT: BIGWIG GRCz10/danRer10
DCD007098DT: BEDGRAPH GRCz10/danRer10
DCD007099DT: BED GRCz10/danRer10
DCD007107DT: BIGBED GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001376AA DCD012854BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001160SQ DCD001386TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000814DT: FASTQ
DCD007061DT: LOG GRCz10/danRer10
DCD007063DT: LOG GRCz10/danRer10
DCD007064DT: LOG GRCz10/danRer10
DCD007065DT: LOG GRCz10/danRer10
DCD007067DT: LOG GRCz10/danRer10
DCD007068DT: LOG GRCz10/danRer10
DCD007070DT: BEDGRAPH GRCz10/danRer10
DCD007071DT: BED GRCz10/danRer10
DCD007072DT: BED GRCz10/danRer10
DCD007073DT: BIGWIG GRCz10/danRer10
DCD007074DT: BIGBED GRCz10/danRer10
DCD007075DT: BIGBED GRCz10/danRer10
DCD007077DT: BED GRCz10/danRer10
DCD007081DT: BIGBED GRCz10/danRer10
DCD007086DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001375AA DCD012855BR RNA-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001159SQ DCD001385TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000813DT: FASTQ
DCD004850DT: LOG GRCz10/danRer10
DCD004852DT: TSV GRCz10/danRer10
DCD004853DT: BEDGRAPH GRCz10/danRer10
DCD004856DT: BEDGRAPH GRCz10/danRer10
DCD004857DT: BEDGRAPH GRCz10/danRer10
DCD004858DT: PDF GRCz10/danRer10
DCD004859DT: LOG GRCz10/danRer10
DCD004860DT: PDF GRCz10/danRer10
DCD004861DT: LOG GRCz10/danRer10
DCD004862DT: BEDGRAPH GRCz10/danRer10
DCD004863DT: BEDGRAPH GRCz10/danRer10
DCD004891DT: BAM GRCz10/danRer10
DCD008686DT: BIGWIG GRCz10/danRer10
DCD013359DT: LOG GRCz11/danRer11
DCD013360DT: TSV GRCz11/danRer11
DCD013361DT: TSV GRCz11/danRer11
DCD013362DT: BEDGRAPH GRCz11/danRer11
DCD013363DT: BEDGRAPH GRCz11/danRer11
DCD013364DT: LOG GRCz11/danRer11
DCD013365DT: PDF GRCz11/danRer11
DCD013366DT: PDF GRCz11/danRer11
DCD013367DT: BIGWIG GRCz11/danRer11
DCD013368DT: LOG GRCz11/danRer11
DCD013371DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001374AA DCD012856BR MeDIP-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001158SQ DCD001384TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000812DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006631BS DCD000227SR whole organism Liu Lab, Beijing Institute of Genomics, CAS TU Germ-ring 5.66
Applied Assay ID Biosample Replicate Assay
DCD001382AA DCD012848BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001166SQ DCD001392TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000820DT: FASTQ
DCD007136DT: LOG GRCz10/danRer10
DCD007138DT: LOG GRCz10/danRer10
DCD007139DT: LOG GRCz10/danRer10
DCD007140DT: LOG GRCz10/danRer10
DCD007142DT: LOG GRCz10/danRer10
DCD007143DT: LOG GRCz10/danRer10
DCD007145DT: BEDGRAPH GRCz10/danRer10
DCD007146DT: BED GRCz10/danRer10
DCD007147DT: BIGWIG GRCz10/danRer10
DCD007148DT: BED GRCz10/danRer10
DCD007149DT: BIGBED GRCz10/danRer10
DCD007150DT: BIGBED GRCz10/danRer10
DCD007152DT: BED GRCz10/danRer10
DCD007156DT: BIGBED GRCz10/danRer10
DCD007204DT: BAM GRCz10/danRer10
DCD018606DT: BEDGRAPH GRCz10/danRer10
DCD018608DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001381AA DCD012849BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001165SQ DCD001391TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000819DT: FASTQ
DCD007121DT: LOG GRCz10/danRer10
DCD007123DT: LOG GRCz10/danRer10
DCD007124DT: LOG GRCz10/danRer10
DCD007125DT: LOG GRCz10/danRer10
DCD007127DT: LOG GRCz10/danRer10
DCD007128DT: LOG GRCz10/danRer10
DCD007130DT: BEDGRAPH GRCz10/danRer10
DCD007131DT: BED GRCz10/danRer10
DCD007132DT: BIGWIG GRCz10/danRer10
DCD007133DT: BIGBED GRCz10/danRer10
DCD007134DT: BED GRCz10/danRer10
DCD007135DT: BIGBED GRCz10/danRer10
DCD007141DT: BED GRCz10/danRer10
DCD007144DT: BIGBED GRCz10/danRer10
DCD007159DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001380AA DCD012850BR RNA-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001164SQ DCD001390TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000818DT: FASTQ
DCD003908DT: LOG GRCz10/danRer10
DCD003909DT: TSV GRCz10/danRer10
DCD003910DT: BEDGRAPH GRCz10/danRer10
DCD003912DT: BEDGRAPH GRCz10/danRer10
DCD003913DT: BEDGRAPH GRCz10/danRer10
DCD003914DT: BEDGRAPH GRCz10/danRer10
DCD003915DT: PDF GRCz10/danRer10
DCD003916DT: BEDGRAPH GRCz10/danRer10
DCD003917DT: LOG GRCz10/danRer10
DCD003918DT: LOG GRCz10/danRer10
DCD003919DT: PDF GRCz10/danRer10
DCD003959DT: BAM GRCz10/danRer10
DCD008683DT: BIGWIG GRCz10/danRer10
DCD013369DT: LOG GRCz11/danRer11
DCD013370DT: TSV GRCz11/danRer11
DCD013372DT: TSV GRCz11/danRer11
DCD013373DT: LOG GRCz11/danRer11
DCD013374DT: PDF GRCz11/danRer11
DCD013375DT: BIGWIG GRCz11/danRer11
DCD013376DT: BEDGRAPH GRCz11/danRer11
DCD013377DT: BEDGRAPH GRCz11/danRer11
DCD013378DT: BAM GRCz11/danRer11
DCD013379DT: LOG GRCz11/danRer11
DCD013381DT: PDF GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006632BS DCD000227SR tissue Liu Lab, Beijing Institute of Genomics, CAS TU 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD001388AA DCD012842BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001172SQ DCD001398TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000826DT: FASTQ
DCD007226DT: LOG GRCz10/danRer10
DCD007228DT: LOG GRCz10/danRer10
DCD007229DT: LOG GRCz10/danRer10
DCD007230DT: LOG GRCz10/danRer10
DCD007232DT: LOG GRCz10/danRer10
DCD007234DT: BEDGRAPH GRCz10/danRer10
DCD007235DT: LOG GRCz10/danRer10
DCD007237DT: BED GRCz10/danRer10
DCD007238DT: BED GRCz10/danRer10
DCD007239DT: BIGBED GRCz10/danRer10
DCD007240DT: BIGWIG GRCz10/danRer10
DCD007242DT: BIGBED GRCz10/danRer10
DCD007243DT: BED GRCz10/danRer10
DCD007244DT: BAM GRCz10/danRer10
DCD007245DT: BIGBED GRCz10/danRer10
DCD018600DT: BEDGRAPH GRCz10/danRer10
DCD018605DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001387AA DCD012843BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001171SQ DCD001397TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000825DT: FASTQ
DCD007212DT: LOG GRCz10/danRer10
DCD007217DT: LOG GRCz10/danRer10
DCD007218DT: LOG GRCz10/danRer10
DCD007219DT: LOG GRCz10/danRer10
DCD007220DT: LOG GRCz10/danRer10
DCD007221DT: BIGBED GRCz10/danRer10
DCD007222DT: BED GRCz10/danRer10
DCD007223DT: BED GRCz10/danRer10
DCD007224DT: BIGWIG GRCz10/danRer10
DCD007225DT: BEDGRAPH GRCz10/danRer10
DCD007227DT: LOG GRCz10/danRer10
DCD007231DT: BIGBED GRCz10/danRer10
DCD007233DT: BED GRCz10/danRer10
DCD007236DT: BAM GRCz10/danRer10
DCD007241DT: BIGBED GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001386AA DCD012844BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001170SQ DCD001396TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000824DT: FASTQ
DCD007196DT: LOG GRCz10/danRer10
DCD007198DT: LOG GRCz10/danRer10
DCD007200DT: LOG GRCz10/danRer10
DCD007201DT: LOG GRCz10/danRer10
DCD007202DT: LOG GRCz10/danRer10
DCD007205DT: BEDGRAPH GRCz10/danRer10
DCD007206DT: LOG GRCz10/danRer10
DCD007207DT: BED GRCz10/danRer10
DCD007208DT: BIGBED GRCz10/danRer10
DCD007209DT: BED GRCz10/danRer10
DCD007211DT: BIGWIG GRCz10/danRer10
DCD007213DT: BIGBED GRCz10/danRer10
DCD007214DT: BED GRCz10/danRer10
DCD007215DT: BIGBED GRCz10/danRer10
DCD007216DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001385AA DCD012845BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001169SQ DCD001395TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000823DT: FASTQ
DCD007181DT: LOG GRCz10/danRer10
DCD007184DT: LOG GRCz10/danRer10
DCD007185DT: LOG GRCz10/danRer10
DCD007186DT: LOG GRCz10/danRer10
DCD007187DT: LOG GRCz10/danRer10
DCD007190DT: BEDGRAPH GRCz10/danRer10
DCD007191DT: BIGWIG GRCz10/danRer10
DCD007192DT: LOG GRCz10/danRer10
DCD007193DT: BED GRCz10/danRer10
DCD007194DT: BIGBED GRCz10/danRer10
DCD007195DT: BED GRCz10/danRer10
DCD007197DT: BAM GRCz10/danRer10
DCD007199DT: BIGBED GRCz10/danRer10
DCD007203DT: BED GRCz10/danRer10
DCD007210DT: BIGBED GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001384AA DCD012846BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001168SQ DCD001394TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000822DT: FASTQ
DCD007166DT: LOG GRCz10/danRer10
DCD007168DT: LOG GRCz10/danRer10
DCD007169DT: LOG GRCz10/danRer10
DCD007170DT: LOG GRCz10/danRer10
DCD007172DT: LOG GRCz10/danRer10
DCD007174DT: LOG GRCz10/danRer10
DCD007175DT: BEDGRAPH GRCz10/danRer10
DCD007176DT: BIGBED GRCz10/danRer10
DCD007177DT: BED GRCz10/danRer10
DCD007178DT: BED GRCz10/danRer10
DCD007179DT: BIGWIG GRCz10/danRer10
DCD007180DT: BIGBED GRCz10/danRer10
DCD007182DT: BAM GRCz10/danRer10
DCD007183DT: BED GRCz10/danRer10
DCD007189DT: BIGBED GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001383AA DCD012847BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001167SQ DCD001393TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000821DT: FASTQ
DCD007151DT: LOG GRCz10/danRer10
DCD007153DT: LOG GRCz10/danRer10
DCD007154DT: LOG GRCz10/danRer10
DCD007155DT: LOG GRCz10/danRer10
DCD007157DT: LOG GRCz10/danRer10
DCD007158DT: LOG GRCz10/danRer10
DCD007160DT: BEDGRAPH GRCz10/danRer10
DCD007161DT: BIGBED GRCz10/danRer10
DCD007162DT: BED GRCz10/danRer10
DCD007163DT: BIGWIG GRCz10/danRer10
DCD007164DT: BED GRCz10/danRer10
DCD007165DT: BIGBED GRCz10/danRer10
DCD007171DT: BED GRCz10/danRer10
DCD007173DT: BIGBED GRCz10/danRer10
DCD007188DT: BAM GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006995BS DCD000227SR tissue Liu Lab, Beijing Institute of Genomics, CAS TU 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD001354AA DCD012876BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001138SQ DCD001364TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000792DT: FASTQ
DCD006851DT: LOG GRCz10/danRer10
DCD006856DT: BAM GRCz10/danRer10
DCD006858DT: LOG GRCz10/danRer10
DCD006859DT: LOG GRCz10/danRer10
DCD006860DT: LOG GRCz10/danRer10
DCD006861DT: LOG GRCz10/danRer10
DCD006862DT: BED GRCz10/danRer10
DCD006863DT: BIGBED GRCz10/danRer10
DCD006864DT: BED GRCz10/danRer10
DCD006865DT: BIGWIG GRCz10/danRer10
DCD006867DT: BIGBED GRCz10/danRer10
DCD006868DT: LOG GRCz10/danRer10
DCD006873DT: BEDGRAPH GRCz10/danRer10
DCD006874DT: BED GRCz10/danRer10
DCD006880DT: BIGBED GRCz10/danRer10
DCD018601DT: BEDGRAPH GRCz10/danRer10
DCD018604DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001353AA DCD012877BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001137SQ DCD001363TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000791DT: FASTQ
DCD006837DT: LOG GRCz10/danRer10
DCD006838DT: LOG GRCz10/danRer10
DCD006839DT: LOG GRCz10/danRer10
DCD006840DT: LOG GRCz10/danRer10
DCD006842DT: LOG GRCz10/danRer10
DCD006843DT: LOG GRCz10/danRer10
DCD006845DT: BED GRCz10/danRer10
DCD006846DT: BEDGRAPH GRCz10/danRer10
DCD006848DT: BIGWIG GRCz10/danRer10
DCD006849DT: BED GRCz10/danRer10
DCD006850DT: BIGBED GRCz10/danRer10
DCD006852DT: BIGBED GRCz10/danRer10
DCD006853DT: BED GRCz10/danRer10
DCD006854DT: BIGBED GRCz10/danRer10
DCD006857DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001352AA DCD012878BR BS-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001136SQ DCD001362TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000790DT: FASTQ
DCD006821DT: LOG GRCz10/danRer10
DCD006823DT: LOG GRCz10/danRer10
DCD006824DT: LOG GRCz10/danRer10
DCD006825DT: LOG GRCz10/danRer10
DCD006827DT: LOG GRCz10/danRer10
DCD006830DT: LOG GRCz10/danRer10
DCD006831DT: BEDGRAPH GRCz10/danRer10
DCD006832DT: BED GRCz10/danRer10
DCD006834DT: BIGWIG GRCz10/danRer10
DCD006835DT: BIGBED GRCz10/danRer10
DCD006836DT: BED GRCz10/danRer10
DCD006841DT: BIGBED GRCz10/danRer10
DCD006844DT: BED GRCz10/danRer10
DCD006847DT: BIGBED GRCz10/danRer10
DCD006855DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001347AA DCD012883BR RNA-seq_Liu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001131SQ DCD001357TR Liu Lab, Beijing Institute of Genomics, CAS Illumina HiSeq 2000 01/01/2001
DCD000785DT: FASTQ
DCD004137DT: LOG GRCz10/danRer10
DCD004138DT: TSV GRCz10/danRer10
DCD004139DT: BEDGRAPH GRCz10/danRer10
DCD004140DT: BEDGRAPH GRCz10/danRer10
DCD004142DT: BEDGRAPH GRCz10/danRer10
DCD004144DT: LOG GRCz10/danRer10
DCD004145DT: PDF GRCz10/danRer10
DCD004146DT: LOG GRCz10/danRer10
DCD004147DT: PDF GRCz10/danRer10
DCD004148DT: BEDGRAPH GRCz10/danRer10
DCD004149DT: BEDGRAPH GRCz10/danRer10
DCD004183DT: BAM GRCz10/danRer10
DCD008673DT: BIGWIG GRCz10/danRer10
DCD013347DT: LOG GRCz11/danRer11
DCD013349DT: BAM GRCz11/danRer11
DCD013350DT: TSV GRCz11/danRer11
DCD013351DT: TSV GRCz11/danRer11
DCD013352DT: BEDGRAPH GRCz11/danRer11
DCD013353DT: BEDGRAPH GRCz11/danRer11
DCD013354DT: BIGWIG GRCz11/danRer11
DCD013355DT: LOG GRCz11/danRer11
DCD013356DT: PDF GRCz11/danRer11
DCD013357DT: PDF GRCz11/danRer11
DCD013358DT: LOG GRCz11/danRer11