RNA-seq of zebrafish brain, liver and skin during perturbation with rotenone at young and old age (control only)
Survey
10.1016/j.cels.2016.01.014
GSE66362
Zebrafish of two different age groups (12 and 36 months) were treated with low amounts of rotenone (mild stress) and compared to untreated zebrafish. Two different durations were used (3 and 8 weeks). Here only controls have been taken.
True
mickael.dong
Jan. 16, 2018, 3:03 a.m.
Oct. 23, 2018, 12:16 a.m.
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007088BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | brain | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002136AA | DCD013727BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002512SQ | DCD002538TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002137AA | DCD013728BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002513SQ | DCD002539TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002138AA | DCD013729BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002514SQ | DCD002540TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007089BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | brain | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002139AA | DCD013730BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002515SQ | DCD002541TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002140AA | DCD013731BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002516SQ | DCD002542TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002141AA | DCD013732BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002517SQ | DCD002543TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007090BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | brain | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002142AA | DCD013733BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002518SQ | DCD002544TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002143AA | DCD013734BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002519SQ | DCD002545TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002144AA | DCD013735BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002520SQ | DCD002546TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007091BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | brain | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002145AA | DCD013736BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002521SQ | DCD002547TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002146AA | DCD013737BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002522SQ | DCD002548TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002147AA | DCD013738BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002523SQ | DCD002549TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002148AA | DCD013739BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002524SQ | DCD002550TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007092BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | liver | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002149AA | DCD013740BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002525SQ | DCD002551TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002150AA | DCD013741BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002526SQ | DCD002552TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007093BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | liver | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002151AA | DCD013742BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002527SQ | DCD002553TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002152AA | DCD013743BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002528SQ | DCD002554TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002153AA | DCD013744BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002529SQ | DCD002555TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007094BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | liver | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002154AA | DCD013745BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002530SQ | DCD002556TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002155AA | DCD013746BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002531SQ | DCD002557TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007095BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | liver | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002156AA | DCD013747BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002532SQ | DCD002558TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002157AA | DCD013748BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002533SQ | DCD002559TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002158AA | DCD013749BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002534SQ | DCD002560TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007096BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | skin flap | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002159AA | DCD013750BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002535SQ | DCD002561TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002160AA | DCD013751BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002536SQ | DCD002562TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002161AA | DCD013752BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002537SQ | DCD002563TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007097BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | skin flap | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002162AA | DCD013753BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002538SQ | DCD002564TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002163AA | DCD013754BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002539SQ | DCD002565TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002164AA | DCD013755BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002540SQ | DCD002566TR | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | Illumina | HiSeq 2500 | TruSeq RNA sample prep kit v2 | unstranded | 04/21/2016 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
---|---|---|---|---|---|---|---|
DCD007098BS | DCD000395SR | tissue | Englert lab, Leibniz Institute for Age Research - Fritz Lipmann Institute | WT | 90 Days-2 Years | skin flap | adult |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002165AA | DCD013756BR | RNA-seq_Englert_lab_0001AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Strand | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002541SQ |