Series Summary for DCD000401SR

Placeholder nucleosomes underlie germline-to-embryo DNA methylation reprogramming

Survey

10.1016/j.cell.2018.01.022

GSE95033

Establish baseline expression transcriptional signatures for zebrafish developmental stages. Total RNA was extracted from single wild type zebrafish embryos at a series of different developmental stages. RNA from 12 embryos was pooled to generate a replicate.The RNA was DNase treated. Stranded RNAseq libraries were constructed using the Illumina TruSeq Stranded RNA protocol with oligo dT pulldown.This data is part of a pre-publication release.

True

danio-user

March 7, 2018, 12:12 a.m.

Nov. 7, 2018, 6:43 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background
DCD007121BS DCD000401SR tissue Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD002312AA DCD013821BR ChIP-seq_Cairns_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002655SQ DCD002681TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008176DT: FASTQ
DCD008941DT: BIGNARROWPEAK GRCz10/danRer10
DCD009037DT: BIGWIG GRCz10/danRer10
DCD016524DT: BAM GRCz11/danRer11
DCD016525DT: BED GRCz11/danRer11
DCD016526DT: BIGNARROWPEAK GRCz11/danRer11
DCD016527DT: BIGNARROWPEAK GRCz11/danRer11
DCD016530DT: BIGWIG GRCz11/danRer11
DCD016793DT: BED GRCz10/danRer10
DCD016795DT: BAM GRCz10/danRer10
DCD016796DT: BIGNARROWPEAK GRCz10/danRer10
DCD016797DT: BIGNARROWPEAK GRCz10/danRer10
DCD017226DT: BAM GRCz10/danRer10
DCD017227DT: BED GRCz10/danRer10
DCD017228DT: BIGNARROWPEAK GRCz10/danRer10
DCD017229DT: BIGNARROWPEAK GRCz10/danRer10
DCD017231DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002315AA DCD013821BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002661SQ DCD002700TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008186DT: FASTQ
DCD008922DT: BIGNARROWPEAK GRCz10/danRer10
DCD009014DT: BIGWIG GRCz10/danRer10
DCD016574DT: BED GRCz11/danRer11
DCD016575DT: BAM GRCz11/danRer11
DCD016812DT: BED GRCz10/danRer10
DCD016813DT: BAM GRCz10/danRer10
DCD017248DT: BAM GRCz10/danRer10
DCD017249DT: BED GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002278AA DCD013824BR ChIP-seq_Cairns_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002654SQ DCD002739TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008166DT: FASTQ
DCD008944DT: BIGNARROWPEAK GRCz10/danRer10
DCD009047DT: BIGWIG GRCz10/danRer10
DCD016578DT: BED GRCz11/danRer11
DCD016581DT: BAM GRCz11/danRer11
DCD016799DT: BED GRCz10/danRer10
DCD016801DT: BAM GRCz10/danRer10
DCD017230DT: BED GRCz10/danRer10
DCD017232DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002280AA DCD013824BR ChIP-seq_Cairns_Lab_Input_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002723SQ DCD002716TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008162DT: FASTQ
DCD016987DT: BAM GRCz10/danRer10
DCD017017DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002310AA DCD013824BR ChIP-seq_Cairns_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002664SQ DCD002670TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008179DT: FASTQ
DCD008945DT: BIGNARROWPEAK GRCz10/danRer10
DCD009045DT: BIGWIG GRCz10/danRer10
DCD016513DT: BED GRCz11/danRer11
DCD016515DT: BAM GRCz11/danRer11
DCD016516DT: BIGNARROWPEAK GRCz11/danRer11
DCD016517DT: BIGNARROWPEAK GRCz11/danRer11
DCD016518DT: BIGWIG GRCz11/danRer11
DCD016790DT: BIGNARROWPEAK GRCz10/danRer10
DCD016791DT: BIGNARROWPEAK GRCz10/danRer10
DCD016792DT: BED GRCz10/danRer10
DCD016794DT: BAM GRCz10/danRer10
DCD017221DT: BAM GRCz10/danRer10
DCD017222DT: BIGNARROWPEAK GRCz10/danRer10
DCD017223DT: BIGNARROWPEAK GRCz10/danRer10
DCD017224DT: BED GRCz10/danRer10
DCD017225DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002313AA DCD013824BR ChIP-seq_Cairns_Lab_H3K27me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002689SQ DCD002701TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008173DT: FASTQ
DCD009046DT: BIGWIG GRCz10/danRer10
DCD016483DT: BAM GRCz11/danRer11
DCD016487DT: BED GRCz11/danRer11
DCD016761DT: BAM GRCz10/danRer10
DCD016763DT: BED GRCz10/danRer10
DCD017179DT: BED GRCz10/danRer10
DCD017181DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002316AA DCD013824BR ChIP-seq_Cairns_Lab_H3K14ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002691SQ DCD002667TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008183DT: FASTQ
DCD009038DT: BIGWIG GRCz10/danRer10
DCD016399DT: BED GRCz11/danRer11
DCD016401DT: BAM GRCz11/danRer11
DCD016884DT: BED GRCz10/danRer10
DCD016887DT: BAM GRCz10/danRer10
DCD017339DT: BAM GRCz10/danRer10
DCD017340DT: BED GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002319AA DCD013824BR ChIP-seq_Cairns_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002701SQ DCD002688TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008169DT: FASTQ
DCD008948DT: BIGNARROWPEAK GRCz10/danRer10
DCD009056DT: BIGWIG GRCz10/danRer10
DCD016404DT: BED GRCz11/danRer11
DCD016405DT: BAM GRCz11/danRer11
DCD016406DT: BIGNARROWPEAK GRCz11/danRer11
DCD016407DT: BIGNARROWPEAK GRCz11/danRer11
DCD016410DT: BIGWIG GRCz11/danRer11
DCD016722DT: BED GRCz10/danRer10
DCD016723DT: BAM GRCz10/danRer10
DCD016724DT: BIGNARROWPEAK GRCz10/danRer10
DCD016725DT: BIGNARROWPEAK GRCz10/danRer10
DCD017132DT: BAM GRCz10/danRer10
DCD017133DT: BIGNARROWPEAK GRCz10/danRer10
DCD017134DT: BIGNARROWPEAK GRCz10/danRer10
DCD017135DT: BED GRCz10/danRer10
DCD017137DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002322AA DCD013824BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002694SQ DCD002730TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008261DT: FASTQ
DCD008928DT: BIGNARROWPEAK GRCz10/danRer10
DCD009018DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002341AA DCD013824BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002665SQ DCD002698TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008189DT: FASTQ
DCD008923DT: BIGNARROWPEAK GRCz10/danRer10
DCD009013DT: BIGWIG GRCz10/danRer10
DCD016565DT: BED GRCz11/danRer11
DCD016566DT: BAM GRCz11/danRer11
DCD016967DT: BAM GRCz10/danRer10
DCD016968DT: BED GRCz10/danRer10
DCD017250DT: BED GRCz10/danRer10
DCD017252DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002279AA DCD013825BR ChIP-seq_Cairns_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002686SQ DCD002743TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008167DT: FASTQ
DCD008947DT: BIGNARROWPEAK GRCz10/danRer10
DCD009055DT: BIGWIG GRCz10/danRer10
DCD016408DT: BIGNARROWPEAK GRCz11/danRer11
DCD016409DT: BED GRCz11/danRer11
DCD016411DT: BAM GRCz11/danRer11
DCD016412DT: BIGNARROWPEAK GRCz11/danRer11
DCD016413DT: BIGWIG GRCz11/danRer11
DCD016718DT: BIGNARROWPEAK GRCz10/danRer10
DCD016719DT: BIGNARROWPEAK GRCz10/danRer10
DCD016720DT: BED GRCz10/danRer10
DCD016721DT: BAM GRCz10/danRer10
DCD017127DT: BIGNARROWPEAK GRCz10/danRer10
DCD017128DT: BIGNARROWPEAK GRCz10/danRer10
DCD017129DT: BED GRCz10/danRer10
DCD017130DT: BIGWIG GRCz10/danRer10
DCD017131DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002281AA DCD013825BR ChIP-seq_Cairns_Lab_H3K4me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002724SQ DCD002744TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008163DT: FASTQ
DCD008946DT: BIGNARROWPEAK GRCz10/danRer10
DCD009054DT: BIGWIG GRCz10/danRer10
DCD016571DT: BED GRCz11/danRer11
DCD016572DT: BAM GRCz11/danRer11
DCD016576DT: BIGNARROWPEAK GRCz11/danRer11
DCD016577DT: BIGNARROWPEAK GRCz11/danRer11
DCD016579DT: BIGWIG GRCz11/danRer11
DCD016798DT: BED GRCz10/danRer10
DCD016800DT: BAM GRCz10/danRer10
DCD016802DT: BIGNARROWPEAK GRCz10/danRer10
DCD016803DT: BIGNARROWPEAK GRCz10/danRer10
DCD017233DT: BAM GRCz10/danRer10
DCD017234DT: BIGNARROWPEAK GRCz10/danRer10
DCD017235DT: BIGNARROWPEAK GRCz10/danRer10
DCD017236DT: BED GRCz10/danRer10
DCD017237DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002311AA DCD013825BR ChIP-seq_Cairns_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002660SQ DCD002699TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008177DT: FASTQ
DCD008942DT: BIGNARROWPEAK GRCz10/danRer10
DCD009043DT: BIGWIG GRCz10/danRer10
DCD016519DT: BAM GRCz11/danRer11
DCD016520DT: BIGNARROWPEAK GRCz11/danRer11
DCD016521DT: BIGNARROWPEAK GRCz11/danRer11
DCD016522DT: BED GRCz11/danRer11
DCD016523DT: BIGWIG GRCz11/danRer11
DCD016962DT: BIGNARROWPEAK GRCz10/danRer10
DCD016963DT: BED GRCz10/danRer10
DCD016965DT: BAM GRCz10/danRer10
DCD016966DT: BIGNARROWPEAK GRCz10/danRer10
DCD017216DT: BAM GRCz10/danRer10
DCD017217DT: BIGNARROWPEAK GRCz10/danRer10
DCD017218DT: BIGNARROWPEAK GRCz10/danRer10
DCD017219DT: BED GRCz10/danRer10
DCD017220DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002314AA DCD013825BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002667SQ DCD002686TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008188DT: FASTQ
DCD008924DT: BIGNARROWPEAK GRCz10/danRer10
DCD009012DT: BIGWIG GRCz10/danRer10
DCD016567DT: BIGNARROWPEAK GRCz11/danRer11
DCD016568DT: BED GRCz11/danRer11
DCD016569DT: BAM GRCz11/danRer11
DCD016570DT: BIGNARROWPEAK GRCz11/danRer11
DCD016573DT: BIGWIG GRCz11/danRer11
DCD016814DT: BED GRCz10/danRer10
DCD016815DT: BAM GRCz10/danRer10
DCD016816DT: BIGNARROWPEAK GRCz10/danRer10
DCD016817DT: BIGNARROWPEAK GRCz10/danRer10
DCD017251DT: BED GRCz10/danRer10
DCD017253DT: BAM GRCz10/danRer10
DCD017255DT: BIGNARROWPEAK GRCz10/danRer10
DCD017256DT: BIGNARROWPEAK GRCz10/danRer10
DCD017258DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002317AA DCD013825BR ChIP-seq_Cairns_Lab_H3K14ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002703SQ DCD002690TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008181DT: FASTQ
DCD009036DT: BIGWIG GRCz10/danRer10
DCD016402DT: BED GRCz11/danRer11
DCD016403DT: BAM GRCz11/danRer11
DCD016882DT: BED GRCz10/danRer10
DCD016886DT: BAM GRCz10/danRer10
DCD017337DT: BAM GRCz10/danRer10
DCD017338DT: BED GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002318AA DCD013825BR ChIP-seq_Cairns_Lab_H3K27me3_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002671SQ DCD002720TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008172DT: FASTQ
DCD009044DT: BIGWIG GRCz10/danRer10
DCD016478DT: BIGNARROWPEAK GRCz11/danRer11
DCD016479DT: BIGNARROWPEAK GRCz11/danRer11
DCD016480DT: BED GRCz11/danRer11
DCD016481DT: BIGWIG GRCz11/danRer11
DCD016482DT: BAM GRCz11/danRer11
DCD016762DT: BIGNARROWPEAK GRCz10/danRer10
DCD016765DT: BED GRCz10/danRer10
DCD016766DT: BAM GRCz10/danRer10
DCD016767DT: BIGNARROWPEAK GRCz10/danRer10
DCD017180DT: BED GRCz10/danRer10
DCD017182DT: BAM GRCz10/danRer10
DCD017183DT: BIGNARROWPEAK GRCz10/danRer10
DCD017184DT: BIGNARROWPEAK GRCz10/danRer10
DCD017188DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002324AA DCD013825BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002695SQ DCD002711TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008260DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007122BS DCD000401SR whole organism Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD002283AA DCD013833BR RNA-seq_Cairns_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002645SQ DCD002746TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008159DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002282AA DCD013834BR RNA-seq_Cairns_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002690SQ DCD002718TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008157DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007123BS DCD000401SR whole organism Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD002289AA DCD013816BR ChIP-seq_Cairns_Lab_H3K14ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002646SQ DCD002691TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008210DT: FASTQ
DCD009034DT: BIGWIG GRCz10/danRer10
DCD016779DT: BAM GRCz10/danRer10
DCD016780DT: BIGNARROWPEAK GRCz10/danRer10
DCD016781DT: BIGNARROWPEAK GRCz10/danRer10
DCD016782DT: BED GRCz10/danRer10
DCD017200DT: BED GRCz10/danRer10
DCD017202DT: BAM GRCz10/danRer10
DCD017203DT: BIGNARROWPEAK GRCz10/danRer10
DCD017205DT: BIGNARROWPEAK GRCz10/danRer10
DCD017207DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002290AA DCD013816BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002657SQ DCD002712TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008215DT: FASTQ
DCD008920DT: BIGNARROWPEAK GRCz10/danRer10
DCD009015DT: BIGWIG GRCz10/danRer10
DCD016424DT: BIGNARROWPEAK GRCz11/danRer11
DCD016425DT: BIGNARROWPEAK GRCz11/danRer11
DCD016426DT: BED GRCz11/danRer11
DCD016427DT: BIGWIG GRCz11/danRer11
DCD016429DT: BAM GRCz11/danRer11
DCD016846DT: BED GRCz10/danRer10
DCD016847DT: BAM GRCz10/danRer10
DCD016848DT: BIGNARROWPEAK GRCz10/danRer10
DCD016849DT: BIGNARROWPEAK GRCz10/danRer10
DCD017292DT: BAM GRCz10/danRer10
DCD017293DT: BED GRCz10/danRer10
DCD017294DT: BIGNARROWPEAK GRCz10/danRer10
DCD017295DT: BIGNARROWPEAK GRCz10/danRer10
DCD017297DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002323AA DCD013816BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002668SQ DCD002705TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008263DT: FASTQ
DCD008925DT: BIGNARROWPEAK GRCz10/danRer10
DCD009017DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002291AA DCD013817BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002700SQ DCD002737TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008214DT: FASTQ
DCD008932DT: BIGNARROWPEAK GRCz10/danRer10
DCD009026DT: BIGWIG GRCz10/danRer10
DCD016418DT: BIGNARROWPEAK GRCz11/danRer11
DCD016419DT: BIGNARROWPEAK GRCz11/danRer11
DCD016420DT: BED GRCz11/danRer11
DCD016422DT: BIGWIG GRCz11/danRer11
DCD016423DT: BAM GRCz11/danRer11
DCD016842DT: BED GRCz10/danRer10
DCD016843DT: BAM GRCz10/danRer10
DCD016844DT: BIGNARROWPEAK GRCz10/danRer10
DCD016845DT: BIGNARROWPEAK GRCz10/danRer10
DCD017287DT: BAM GRCz10/danRer10
DCD017288DT: BIGNARROWPEAK GRCz10/danRer10
DCD017289DT: BIGNARROWPEAK GRCz10/danRer10
DCD017290DT: BED GRCz10/danRer10
DCD017291DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002288AA DCD013818BR ChIP-seq_Cairns_Lab_H3K14ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002708SQ DCD002703TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008212DT: FASTQ
DCD009039DT: BIGWIG GRCz10/danRer10
DCD016775DT: BIGNARROWPEAK GRCz10/danRer10
DCD016776DT: BED GRCz10/danRer10
DCD016777DT: BIGNARROWPEAK GRCz10/danRer10
DCD016778DT: BAM GRCz10/danRer10
DCD017195DT: BAM GRCz10/danRer10
DCD017197DT: BIGNARROWPEAK GRCz10/danRer10
DCD017198DT: BIGNARROWPEAK GRCz10/danRer10
DCD017199DT: BED GRCz10/danRer10
DCD017201DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002293AA DCD013818BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002684SQ DCD002714TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008217DT: FASTQ
DCD008929DT: BIGNARROWPEAK GRCz10/danRer10
DCD009020DT: BIGWIG GRCz10/danRer10
DCD016414DT: BIGNARROWPEAK GRCz11/danRer11
DCD016415DT: BIGNARROWPEAK GRCz11/danRer11
DCD016416DT: BED GRCz11/danRer11
DCD016417DT: BAM GRCz11/danRer11
DCD016421DT: BIGWIG GRCz11/danRer11
DCD016838DT: BED GRCz10/danRer10
DCD016839DT: BAM GRCz10/danRer10
DCD016840DT: BIGNARROWPEAK GRCz10/danRer10
DCD016841DT: BIGNARROWPEAK GRCz10/danRer10
DCD017282DT: BIGNARROWPEAK GRCz10/danRer10
DCD017283DT: BAM GRCz10/danRer10
DCD017284DT: BED GRCz10/danRer10
DCD017285DT: BIGNARROWPEAK GRCz10/danRer10
DCD017286DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002327AA DCD013818BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002720SQ DCD002668TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008266DT: FASTQ
DCD008937DT: BIGNARROWPEAK GRCz10/danRer10
DCD009029DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007124BS DCD000401SR whole organism Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD002350AA DCD013827BR ChIP-seq_Cairns_Lab_H3K14ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002702SQ DCD002741TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008200DT: FASTQ
DCD009040DT: BIGWIG GRCz10/danRer10
DCD016380DT: BAM GRCz11/danRer11
DCD016381DT: BED GRCz11/danRer11
DCD016382DT: BIGNARROWPEAK GRCz11/danRer11
DCD016383DT: BIGNARROWPEAK GRCz11/danRer11
DCD016385DT: BIGWIG GRCz11/danRer11
DCD016709DT: BED GRCz10/danRer10
DCD016711DT: BAM GRCz10/danRer10
DCD016712DT: BIGNARROWPEAK GRCz10/danRer10
DCD016713DT: BIGNARROWPEAK GRCz10/danRer10
DCD017115DT: BIGNARROWPEAK GRCz10/danRer10
DCD017116DT: BIGNARROWPEAK GRCz10/danRer10
DCD017118DT: BED GRCz10/danRer10
DCD017120DT: BAM GRCz10/danRer10
DCD017126DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002342AA DCD013828BR ChIP-seq_Cairns_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002666SQ DCD002715TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008191DT: FASTQ
DCD009050DT: BIGWIG GRCz10/danRer10
DCD016539DT: BAM GRCz11/danRer11
DCD016540DT: BIGNARROWPEAK GRCz11/danRer11
DCD016541DT: BIGNARROWPEAK GRCz11/danRer11
DCD016542DT: BED GRCz11/danRer11
DCD016545DT: BIGWIG GRCz11/danRer11
DCD016768DT: BIGNARROWPEAK GRCz10/danRer10
DCD016769DT: BIGNARROWPEAK GRCz10/danRer10
DCD016770DT: BED GRCz10/danRer10
DCD016772DT: BAM GRCz10/danRer10
DCD017185DT: BIGNARROWPEAK GRCz10/danRer10
DCD017186DT: BIGNARROWPEAK GRCz10/danRer10
DCD017187DT: BED GRCz10/danRer10
DCD017189DT: BIGWIG GRCz10/danRer10
DCD017190DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002343AA DCD013828BR ChIP-seq_Cairns_Lab_H3K14ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002683SQ DCD002713TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008201DT: FASTQ
DCD009030DT: BIGWIG GRCz10/danRer10
DCD016384DT: BED GRCz11/danRer11
DCD016386DT: BAM GRCz11/danRer11
DCD016387DT: BIGNARROWPEAK GRCz11/danRer11
DCD016388DT: BIGNARROWPEAK GRCz11/danRer11
DCD016391DT: BIGWIG GRCz11/danRer11
DCD016706DT: BIGNARROWPEAK GRCz10/danRer10
DCD016707DT: BIGNARROWPEAK GRCz10/danRer10
DCD016708DT: BED GRCz10/danRer10
DCD016710DT: BAM GRCz10/danRer10
DCD017111DT: BIGNARROWPEAK GRCz10/danRer10
DCD017112DT: BED GRCz10/danRer10
DCD017114DT: BAM GRCz10/danRer10
DCD017117DT: BIGNARROWPEAK GRCz10/danRer10
DCD017119DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002345AA DCD013828BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002721SQ DCD002694TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008205DT: FASTQ
DCD008938DT: BIGNARROWPEAK GRCz10/danRer10
DCD009033DT: BIGWIG GRCz10/danRer10
DCD016613DT: BIGNARROWPEAK GRCz11/danRer11
DCD016614DT: BED GRCz11/danRer11
DCD016616DT: BAM GRCz11/danRer11
DCD016617DT: BIGNARROWPEAK GRCz11/danRer11
DCD016621DT: BIGWIG GRCz11/danRer11
DCD016698DT: BAM GRCz10/danRer10
DCD016699DT: BED GRCz10/danRer10
DCD016700DT: BIGNARROWPEAK GRCz10/danRer10
DCD016701DT: BIGNARROWPEAK GRCz10/danRer10
DCD017102DT: BAM GRCz10/danRer10
DCD017103DT: BIGNARROWPEAK GRCz10/danRer10
DCD017104DT: BIGNARROWPEAK GRCz10/danRer10
DCD017106DT: BED GRCz10/danRer10
DCD017107DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002348AA DCD013828BR ChIP-seq_Cairns_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002715SQ DCD002735TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008196DT: FASTQ
DCD008943DT: BIGNARROWPEAK GRCz10/danRer10
DCD009041DT: BIGWIG GRCz10/danRer10
DCD016339DT: BAM GRCz11/danRer11
DCD016341DT: BIGNARROWPEAK GRCz11/danRer11
DCD016342DT: BIGNARROWPEAK GRCz11/danRer11
DCD016343DT: BED GRCz11/danRer11
DCD016345DT: BIGWIG GRCz11/danRer11
DCD016874DT: BED GRCz10/danRer10
DCD016875DT: BAM GRCz10/danRer10
DCD016876DT: BIGNARROWPEAK GRCz10/danRer10
DCD016877DT: BIGNARROWPEAK GRCz10/danRer10
DCD017326DT: BED GRCz10/danRer10
DCD017327DT: BAM GRCz10/danRer10
DCD017329DT: BIGNARROWPEAK GRCz10/danRer10
DCD017330DT: BIGNARROWPEAK GRCz10/danRer10
DCD017333DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002344AA DCD013829BR ChIP-seq_Cairns_Lab_H3K14ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002658SQ DCD002692TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008204DT: FASTQ
DCD009032DT: BIGWIG GRCz10/danRer10
DCD016374DT: BAM GRCz11/danRer11
DCD016376DT: BED GRCz11/danRer11
DCD016377DT: BIGNARROWPEAK GRCz11/danRer11
DCD016378DT: BIGNARROWPEAK GRCz11/danRer11
DCD016379DT: BIGWIG GRCz11/danRer11
DCD016702DT: BED GRCz10/danRer10
DCD016703DT: BIGNARROWPEAK GRCz10/danRer10
DCD016704DT: BAM GRCz10/danRer10
DCD016705DT: BIGNARROWPEAK GRCz10/danRer10
DCD017105DT: BED GRCz10/danRer10
DCD017108DT: BAM GRCz10/danRer10
DCD017109DT: BIGNARROWPEAK GRCz10/danRer10
DCD017110DT: BIGNARROWPEAK GRCz10/danRer10
DCD017113DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002346AA DCD013829BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002676SQ DCD002680TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008207DT: FASTQ
DCD008927DT: BIGNARROWPEAK GRCz10/danRer10
DCD009019DT: BIGWIG GRCz10/danRer10
DCD016618DT: BIGNARROWPEAK GRCz11/danRer11
DCD016619DT: BIGNARROWPEAK GRCz11/danRer11
DCD016620DT: BED GRCz11/danRer11
DCD016622DT: BAM GRCz11/danRer11
DCD016627DT: BIGWIG GRCz11/danRer11
DCD016694DT: BAM GRCz10/danRer10
DCD016695DT: BIGNARROWPEAK GRCz10/danRer10
DCD016696DT: BIGNARROWPEAK GRCz10/danRer10
DCD016697DT: BED GRCz10/danRer10
DCD017097DT: BIGNARROWPEAK GRCz10/danRer10
DCD017098DT: BED GRCz10/danRer10
DCD017099DT: BAM GRCz10/danRer10
DCD017100DT: BIGNARROWPEAK GRCz10/danRer10
DCD017101DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002347AA DCD013829BR ChIP-seq_Cairns_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002714SQ DCD002697TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008193DT: FASTQ
DCD009052DT: BIGWIG GRCz10/danRer10
DCD016534DT: BIGNARROWPEAK GRCz11/danRer11
DCD016535DT: BED GRCz11/danRer11
DCD016536DT: BAM GRCz11/danRer11
DCD016537DT: BIGNARROWPEAK GRCz11/danRer11
DCD016538DT: BIGWIG GRCz11/danRer11
DCD016771DT: BED GRCz10/danRer10
DCD016773DT: BIGNARROWPEAK GRCz10/danRer10
DCD016774DT: BIGNARROWPEAK GRCz10/danRer10
DCD016964DT: BAM GRCz10/danRer10
DCD017191DT: BIGNARROWPEAK GRCz10/danRer10
DCD017192DT: BIGNARROWPEAK GRCz10/danRer10
DCD017193DT: BED GRCz10/danRer10
DCD017194DT: BIGWIG GRCz10/danRer10
DCD017196DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002349AA DCD013829BR ChIP-seq_Cairns_Lab_H3K27ac_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002644SQ DCD002707TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008197DT: FASTQ
DCD008940DT: BIGNARROWPEAK GRCz10/danRer10
DCD009035DT: BIGWIG GRCz10/danRer10
DCD016335DT: BAM GRCz11/danRer11
DCD016336DT: BIGNARROWPEAK GRCz11/danRer11
DCD016337DT: BIGNARROWPEAK GRCz11/danRer11
DCD016338DT: BED GRCz11/danRer11
DCD016340DT: BIGWIG GRCz11/danRer11
DCD016870DT: BAM GRCz10/danRer10
DCD016871DT: BED GRCz10/danRer10
DCD016872DT: BIGNARROWPEAK GRCz10/danRer10
DCD016873DT: BIGNARROWPEAK GRCz10/danRer10
DCD017320DT: BAM GRCz10/danRer10
DCD017323DT: BED GRCz10/danRer10
DCD017324DT: BIGNARROWPEAK GRCz10/danRer10
DCD017325DT: BIGNARROWPEAK GRCz10/danRer10
DCD017328DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007125BS DCD000401SR tissue Cairns Lab, HHMI NHGRI-1
Applied Assay ID Biosample Replicate Assay
DCD002275AA DCD013835BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002706SQ DCD002750TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008229DT: FASTQ
DCD008935DT: BIGNARROWPEAK GRCz10/danRer10
DCD009023DT: BIGWIG GRCz10/danRer10
DCD016359DT: BIGNARROWPEAK GRCz11/danRer11
DCD016360DT: BED GRCz11/danRer11
DCD016362DT: BAM GRCz11/danRer11
DCD016363DT: BIGNARROWPEAK GRCz11/danRer11
DCD016364DT: BIGWIG GRCz11/danRer11
DCD016945DT: BED GRCz10/danRer10
DCD016946DT: BAM GRCz10/danRer10
DCD016947DT: BIGNARROWPEAK GRCz10/danRer10
DCD016948DT: BIGNARROWPEAK GRCz10/danRer10
DCD017413DT: BAM GRCz10/danRer10
DCD017414DT: BIGNARROWPEAK GRCz10/danRer10
DCD017415DT: BIGNARROWPEAK GRCz10/danRer10
DCD017416DT: BED GRCz10/danRer10
DCD017417DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002295AA DCD013835BR ChIP-seq_Cairns_Lab_Input_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002643SQ DCD002682TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008221DT: FASTQ
DCD016992DT: BAM GRCz10/danRer10
DCD017029DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002297AA DCD013835BR ChIP-seq_Cairns_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002716SQ DCD002731TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008226DT: FASTQ
DCD009048DT: BIGWIG GRCz10/danRer10
DCD016290DT: BAM GRCz11/danRer11
DCD016291DT: BIGNARROWPEAK GRCz11/danRer11
DCD016292DT: BIGNARROWPEAK GRCz11/danRer11
DCD016293DT: BED GRCz11/danRer11
DCD016295DT: BIGWIG GRCz11/danRer11
DCD016850DT: BIGNARROWPEAK GRCz10/danRer10
DCD016851DT: BED GRCz10/danRer10
DCD016852DT: BIGNARROWPEAK GRCz10/danRer10
DCD016853DT: BAM GRCz10/danRer10
DCD017296DT: BED GRCz10/danRer10
DCD017298DT: BAM GRCz10/danRer10
DCD017299DT: BIGNARROWPEAK GRCz10/danRer10
DCD017301DT: BIGNARROWPEAK GRCz10/danRer10
DCD017303DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002338AA DCD013835BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002642SQ DCD002709TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008130DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002294AA DCD013836BR ChIP-seq_Cairns_Lab_H3K4me1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002685SQ DCD002695TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008224DT: FASTQ
DCD009051DT: BIGWIG GRCz10/danRer10
DCD016283DT: BIGNARROWPEAK GRCz11/danRer11
DCD016284DT: BED GRCz11/danRer11
DCD016287DT: BAM GRCz11/danRer11
DCD016288DT: BIGNARROWPEAK GRCz11/danRer11
DCD016289DT: BIGWIG GRCz11/danRer11
DCD016854DT: BED GRCz10/danRer10
DCD016855DT: BAM GRCz10/danRer10
DCD016856DT: BIGNARROWPEAK GRCz10/danRer10
DCD016857DT: BIGNARROWPEAK GRCz10/danRer10
DCD017300DT: BIGNARROWPEAK GRCz10/danRer10
DCD017302DT: BED GRCz10/danRer10
DCD017304DT: BAM GRCz10/danRer10
DCD017305DT: BIGNARROWPEAK GRCz10/danRer10
DCD017309DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002296AA DCD013836BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002659SQ DCD002708TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008227DT: FASTQ
DCD008917DT: BIGNARROWPEAK GRCz10/danRer10
DCD009011DT: BIGWIG GRCz10/danRer10
DCD016365DT: BAM GRCz11/danRer11
DCD016366DT: BIGNARROWPEAK GRCz11/danRer11
DCD016367DT: BIGNARROWPEAK GRCz11/danRer11
DCD016368DT: BED GRCz11/danRer11
DCD016369DT: BIGWIG GRCz11/danRer11
DCD016941DT: BAM GRCz10/danRer10
DCD016942DT: BIGNARROWPEAK GRCz10/danRer10
DCD016943DT: BED GRCz10/danRer10
DCD016944DT: BIGNARROWPEAK GRCz10/danRer10
DCD017408DT: BAM GRCz10/danRer10
DCD017409DT: BIGNARROWPEAK GRCz10/danRer10
DCD017410DT: BED GRCz10/danRer10
DCD017411DT: BIGNARROWPEAK GRCz10/danRer10
DCD017412DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002309AA DCD013836BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002651SQ DCD002684TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008128DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002308AA DCD013837BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002719SQ DCD002752TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008126DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007126BS DCD000401SR whole organism Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD002292AA DCD013819BR ChIP-seq_Cairns_Lab_Input_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002688SQ DCD002696TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008219DT: FASTQ
DCD016984DT: BAM GRCz10/danRer10
DCD017040DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007127BS DCD000401SR whole organism Cairns Lab, HHMI crossbreed
Applied Assay ID Biosample Replicate Assay
DCD002334AA DCD013830BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002718SQ DCD002721TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008133DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002340AA DCD013830BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002680SQ DCD002727TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008239DT: FASTQ
DCD008926DT: BIGNARROWPEAK GRCz10/danRer10
DCD009022DT: BIGWIG GRCz10/danRer10
DCD016558DT: BAM GRCz11/danRer11
DCD016559DT: BIGNARROWPEAK GRCz11/danRer11
DCD016560DT: BIGNARROWPEAK GRCz11/danRer11
DCD016561DT: BED GRCz11/danRer11
DCD016562DT: BIGWIG GRCz11/danRer11
DCD016862DT: BIGNARROWPEAK GRCz10/danRer10
DCD016863DT: BIGNARROWPEAK GRCz10/danRer10
DCD016864DT: BED GRCz10/danRer10
DCD016865DT: BAM GRCz10/danRer10
DCD017312DT: BIGNARROWPEAK GRCz10/danRer10
DCD017313DT: BIGNARROWPEAK GRCz10/danRer10
DCD017314DT: BED GRCz10/danRer10
DCD017315DT: BIGWIG GRCz10/danRer10
DCD017316DT: BAM GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002276AA DCD013831BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002699SQ DCD002672TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008237DT: FASTQ
DCD008931DT: BIGNARROWPEAK GRCz10/danRer10
DCD009025DT: BIGWIG GRCz10/danRer10
DCD016553DT: BAM GRCz11/danRer11
DCD016554DT: BIGNARROWPEAK GRCz11/danRer11
DCD016555DT: BED GRCz11/danRer11
DCD016556DT: BIGNARROWPEAK GRCz11/danRer11
DCD016557DT: BIGWIG GRCz11/danRer11
DCD016866DT: BED GRCz10/danRer10
DCD016867DT: BAM GRCz10/danRer10
DCD016868DT: BIGNARROWPEAK GRCz10/danRer10
DCD016869DT: BIGNARROWPEAK GRCz10/danRer10
DCD017317DT: BAM GRCz10/danRer10
DCD017318DT: BIGNARROWPEAK GRCz10/danRer10
DCD017319DT: BIGNARROWPEAK GRCz10/danRer10
DCD017321DT: BED GRCz10/danRer10
DCD017322DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002337AA DCD013831BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002653SQ DCD002740TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008131DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002321AA DCD013832BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002710SQ DCD002669TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008242DT: FASTQ
DCD008934DT: BIGNARROWPEAK GRCz10/danRer10
DCD009027DT: BIGWIG GRCz10/danRer10
DCD016548DT: BED GRCz11/danRer11
DCD016549DT: BAM GRCz11/danRer11
DCD016550DT: BIGNARROWPEAK GRCz11/danRer11
DCD016551DT: BIGNARROWPEAK GRCz11/danRer11
DCD016552DT: BIGWIG GRCz11/danRer11
DCD016858DT: BED GRCz10/danRer10
DCD016859DT: BAM GRCz10/danRer10
DCD016860DT: BIGNARROWPEAK GRCz10/danRer10
DCD016861DT: BIGNARROWPEAK GRCz10/danRer10
DCD017306DT: BIGNARROWPEAK GRCz10/danRer10
DCD017307DT: BIGNARROWPEAK GRCz10/danRer10
DCD017308DT: BED GRCz10/danRer10
DCD017310DT: BAM GRCz10/danRer10
DCD017311DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002333AA DCD013832BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002725SQ DCD002702TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008135DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007128BS DCD000401SR whole organism Cairns Lab, HHMI NHGRI-1
Applied Assay ID Biosample Replicate Assay
DCD002305AA DCD013838BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002648SQ DCD002679TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008120DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002339AA DCD013838BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002712SQ DCD002717TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008232DT: FASTQ
DCD008939DT: BIGNARROWPEAK GRCz10/danRer10
DCD009031DT: BIGWIG GRCz10/danRer10
DCD016604DT: BAM GRCz11/danRer11
DCD016605DT: BIGNARROWPEAK GRCz11/danRer11
DCD016606DT: BIGNARROWPEAK GRCz11/danRer11
DCD016607DT: BED GRCz11/danRer11
DCD016609DT: BIGWIG GRCz11/danRer11
DCD016894DT: BIGNARROWPEAK GRCz10/danRer10
DCD016895DT: BIGNARROWPEAK GRCz10/danRer10
DCD016896DT: BED GRCz10/danRer10
DCD016898DT: BAM GRCz10/danRer10
DCD017351DT: BAM GRCz10/danRer10
DCD017352DT: BIGNARROWPEAK GRCz10/danRer10
DCD017353DT: BIGNARROWPEAK GRCz10/danRer10
DCD017354DT: BED GRCz10/danRer10
DCD017355DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002306AA DCD013839BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002693SQ DCD002748TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008122DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002320AA DCD013839BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002704SQ DCD002675TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008234DT: FASTQ
DCD008933DT: BIGNARROWPEAK GRCz10/danRer10
DCD009024DT: BIGWIG GRCz10/danRer10
DCD016599DT: BAM GRCz11/danRer11
DCD016600DT: BIGNARROWPEAK GRCz11/danRer11
DCD016601DT: BED GRCz11/danRer11
DCD016602DT: BIGNARROWPEAK GRCz11/danRer11
DCD016603DT: BIGWIG GRCz11/danRer11
DCD016897DT: BED GRCz10/danRer10
DCD016899DT: BAM GRCz10/danRer10
DCD016900DT: BIGNARROWPEAK GRCz10/danRer10
DCD016902DT: BIGNARROWPEAK GRCz10/danRer10
DCD017356DT: BED GRCz10/danRer10
DCD017357DT: BAM GRCz10/danRer10
DCD017358DT: BIGNARROWPEAK GRCz10/danRer10
DCD017359DT: BIGNARROWPEAK GRCz10/danRer10
DCD017360DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002298AA DCD013840BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002697SQ DCD002734TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008235DT: FASTQ
DCD008930DT: BIGNARROWPEAK GRCz10/danRer10
DCD009021DT: BIGWIG GRCz10/danRer10
DCD016608DT: BED GRCz11/danRer11
DCD016610DT: BAM GRCz11/danRer11
DCD016611DT: BIGNARROWPEAK GRCz11/danRer11
DCD016612DT: BIGNARROWPEAK GRCz11/danRer11
DCD016615DT: BIGWIG GRCz11/danRer11
DCD016901DT: BIGNARROWPEAK GRCz10/danRer10
DCD016903DT: BIGNARROWPEAK GRCz10/danRer10
DCD016904DT: BED GRCz10/danRer10
DCD016905DT: BAM GRCz10/danRer10
DCD017361DT: BIGNARROWPEAK GRCz10/danRer10
DCD017362DT: BED GRCz10/danRer10
DCD017363DT: BAM GRCz10/danRer10
DCD017364DT: BIGNARROWPEAK GRCz10/danRer10
DCD017365DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002307AA DCD013840BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002663SQ DCD002683TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008124DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007129BS DCD000401SR whole organism Cairns Lab, HHMI crossbreed
Applied Assay ID Biosample Replicate Assay
DCD002336AA DCD013822BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002687SQ DCD002706TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008137DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002277AA DCD013823BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002711SQ DCD002733TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008245DT: FASTQ
DCD008936DT: BIGNARROWPEAK GRCz10/danRer10
DCD009028DT: BIGWIG GRCz10/danRer10
DCD016634DT: BAM GRCz11/danRer11
DCD016635DT: BIGNARROWPEAK GRCz11/danRer11
DCD016636DT: BIGNARROWPEAK GRCz11/danRer11
DCD016637DT: BED GRCz11/danRer11
DCD016638DT: BIGWIG GRCz11/danRer11
DCD016953DT: BIGNARROWPEAK GRCz10/danRer10
DCD016954DT: BED GRCz10/danRer10
DCD016955DT: BAM GRCz10/danRer10
DCD016956DT: BIGNARROWPEAK GRCz10/danRer10
DCD017422DT: BED GRCz10/danRer10
DCD017424DT: BAM GRCz10/danRer10
DCD017425DT: BIGNARROWPEAK GRCz10/danRer10
DCD017426DT: BIGNARROWPEAK GRCz10/danRer10
DCD017429DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002329AA DCD013823BR RRBS-seq_Cairns_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002722SQ DCD002689TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008143DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002299AA DCD013826BR ChIP-seq_Cairns_Lab_H2AFV_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002641SQ DCD002724TR Cairns Lab, HHMI Illumina HiSeq 2500 12/12/2017
DCD008244DT: FASTQ
DCD008916DT: BIGNARROWPEAK GRCz10/danRer10
DCD009016DT: BIGWIG GRCz10/danRer10
DCD016639DT: BAM GRCz11/danRer11
DCD016640DT: BED GRCz11/danRer11
DCD016641DT: BIGNARROWPEAK GRCz11/danRer11
DCD016642DT: BIGNARROWPEAK GRCz11/danRer11
DCD016645DT: BIGWIG GRCz11/danRer11
DCD016949DT: BAM GRCz10/danRer10
DCD016950DT: BIGNARROWPEAK GRCz10/danRer10
DCD016951DT: BIGNARROWPEAK GRCz10/danRer10
DCD016952DT: BED GRCz10/danRer10
DCD017418DT: BAM GRCz10/danRer10