Placeholder nucleosomes underlie germline-to-embryo DNA methylation reprogramming
Survey
10.1016/j.cell.2018.01.022
GSE95033
Establish baseline expression transcriptional signatures for zebrafish developmental stages. Total RNA was extracted from single wild type zebrafish embryos at a series of different developmental stages. RNA from 12 embryos was pooled to generate a replicate.The RNA was DNase treated. Stranded RNAseq libraries were constructed using the Illumina TruSeq Stranded RNA protocol with oligo dT pulldown.This data is part of a pre-publication release.
True
danio-user
March 7, 2018, 12:12 a.m.
Nov. 7, 2018, 6:43 a.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007121BS | DCD000401SR | tissue | Cairns Lab, HHMI | TU | 90 Days-2 Years | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002312AA | DCD013821BR | ChIP-seq_Cairns_Lab_H3K27ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002655SQ | DCD002681TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002315AA | DCD013821BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002661SQ | DCD002700TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002278AA | DCD013824BR | ChIP-seq_Cairns_Lab_H3K4me3_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002654SQ | DCD002739TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002280AA | DCD013824BR | ChIP-seq_Cairns_Lab_Input_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002723SQ | DCD002716TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002310AA | DCD013824BR | ChIP-seq_Cairns_Lab_H3K27ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002664SQ | DCD002670TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002313AA | DCD013824BR | ChIP-seq_Cairns_Lab_H3K27me3_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002689SQ | DCD002701TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002316AA | DCD013824BR | ChIP-seq_Cairns_Lab_H3K14ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002691SQ | DCD002667TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002319AA | DCD013824BR | ChIP-seq_Cairns_Lab_H3K4me1_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002701SQ | DCD002688TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002322AA | DCD013824BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002694SQ | DCD002730TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002341AA | DCD013824BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002665SQ | DCD002698TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002279AA | DCD013825BR | ChIP-seq_Cairns_Lab_H3K4me1_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002686SQ | DCD002743TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002281AA | DCD013825BR | ChIP-seq_Cairns_Lab_H3K4me3_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002724SQ | DCD002744TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002311AA | DCD013825BR | ChIP-seq_Cairns_Lab_H3K27ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002660SQ | DCD002699TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002314AA | DCD013825BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002667SQ | DCD002686TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002317AA | DCD013825BR | ChIP-seq_Cairns_Lab_H3K14ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002703SQ | DCD002690TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002318AA | DCD013825BR | ChIP-seq_Cairns_Lab_H3K27me3_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002671SQ | DCD002720TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002324AA | DCD013825BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002695SQ | DCD002711TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007122BS | DCD000401SR | whole organism | Cairns Lab, HHMI | TU | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002283AA | DCD013833BR | RNA-seq_Cairns_Lab_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002645SQ | DCD002746TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002282AA | DCD013834BR | RNA-seq_Cairns_Lab_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002690SQ | DCD002718TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007123BS | DCD000401SR | whole organism | Cairns Lab, HHMI | TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002289AA | DCD013816BR | ChIP-seq_Cairns_Lab_H3K14ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002646SQ | DCD002691TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002290AA | DCD013816BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002657SQ | DCD002712TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002323AA | DCD013816BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002668SQ | DCD002705TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002291AA | DCD013817BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002700SQ | DCD002737TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002288AA | DCD013818BR | ChIP-seq_Cairns_Lab_H3K14ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002708SQ | DCD002703TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002293AA | DCD013818BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002684SQ | DCD002714TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002327AA | DCD013818BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002720SQ | DCD002668TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007124BS | DCD000401SR | whole organism | Cairns Lab, HHMI | TU | 256-cell | 2.5 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002350AA | DCD013827BR | ChIP-seq_Cairns_Lab_H3K14ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002702SQ | DCD002741TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002342AA | DCD013828BR | ChIP-seq_Cairns_Lab_H3K4me1_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002666SQ | DCD002715TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002343AA | DCD013828BR | ChIP-seq_Cairns_Lab_H3K14ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002683SQ | DCD002713TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002345AA | DCD013828BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002721SQ | DCD002694TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002348AA | DCD013828BR | ChIP-seq_Cairns_Lab_H3K27ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002715SQ | DCD002735TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002344AA | DCD013829BR | ChIP-seq_Cairns_Lab_H3K14ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002658SQ | DCD002692TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002346AA | DCD013829BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002676SQ | DCD002680TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002347AA | DCD013829BR | ChIP-seq_Cairns_Lab_H3K4me1_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002714SQ | DCD002697TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002349AA | DCD013829BR | ChIP-seq_Cairns_Lab_H3K27ac_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002644SQ | DCD002707TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007125BS | DCD000401SR | tissue | Cairns Lab, HHMI | NHGRI-1 | 90 Days-2 Years | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002275AA | DCD013835BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002706SQ | DCD002750TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002295AA | DCD013835BR | ChIP-seq_Cairns_Lab_Input_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002643SQ | DCD002682TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002297AA | DCD013835BR | ChIP-seq_Cairns_Lab_H3K4me1_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002716SQ | DCD002731TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002338AA | DCD013835BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002642SQ | DCD002709TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002294AA | DCD013836BR | ChIP-seq_Cairns_Lab_H3K4me1_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002685SQ | DCD002695TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002296AA | DCD013836BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002659SQ | DCD002708TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002309AA | DCD013836BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002651SQ | DCD002684TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002308AA | DCD013837BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002719SQ | DCD002752TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007126BS | DCD000401SR | whole organism | Cairns Lab, HHMI | TU | Sphere | 2.5-4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002292AA | DCD013819BR | ChIP-seq_Cairns_Lab_Input_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002688SQ | DCD002696TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007127BS | DCD000401SR | whole organism | Cairns Lab, HHMI | crossbreed | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002334AA | DCD013830BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002718SQ | DCD002721TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002340AA | DCD013830BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002680SQ | DCD002727TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002276AA | DCD013831BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002699SQ | DCD002672TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002337AA | DCD013831BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002653SQ | DCD002740TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002321AA | DCD013832BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002710SQ | DCD002669TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002333AA | DCD013832BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002725SQ | DCD002702TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007128BS | DCD000401SR | whole organism | Cairns Lab, HHMI | NHGRI-1 | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002305AA | DCD013838BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002648SQ | DCD002679TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002339AA | DCD013838BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002712SQ | DCD002717TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002306AA | DCD013839BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002693SQ | DCD002748TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002320AA | DCD013839BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002704SQ | DCD002675TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002298AA | DCD013840BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002697SQ | DCD002734TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002307AA | DCD013840BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002663SQ | DCD002683TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007129BS | DCD000401SR | whole organism | Cairns Lab, HHMI | crossbreed | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002336AA | DCD013822BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002687SQ | DCD002706TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002277AA | DCD013823BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002711SQ | DCD002733TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002329AA | DCD013823BR | RRBS-seq_Cairns_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002722SQ | DCD002689TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002299AA | DCD013826BR | ChIP-seq_Cairns_Lab_H2AFV_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002641SQ | DCD002724TR | Cairns Lab, HHMI | Illumina | HiSeq 2500 | unstranded | 12/12/2017 |