Transcriptome-wide analysis of small RNA expression in early zebrafish development
Survey
10.1261/rna.029090.111
GSE27722
temporal expression patterns for small noncoding RNAs over 4 stages of development Overall design: small noncoding RNA-seq samples per developmental stage (1 x 256-cell embryo, 2 replicates x sphere embryo, 1 x shield embryo, 1 x 1 day post fertilization embryo).
True
irene.stevens
July 9, 2018, 1:25 a.m.
July 9, 2018, 1:27 a.m.
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD007157BS | DCD000416SR | whole organism | Wei Lab, Vanderbilt University | AB | Prim-5 | 24 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002387AA | DCD013904BR | small-RNA-seq_Wei_Lab_0002AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002765SQ | DCD002791TR | Wei Lab, Vanderbilt University | Illumina | GAIIx | unstranded | 30 | 03/07/2011 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD007158BS | DCD000416SR | whole organism | Wei Lab, Vanderbilt University | AB | Sphere | 4 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002388AA | DCD013901BR | small-RNA-seq_Wei_Lab_0002AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002764SQ | DCD002790TR | Wei Lab, Vanderbilt University | Illumina | GAIIx | unstranded | 30 | 03/07/2011 |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002766SQ | DCD002789TR | Wei Lab, Vanderbilt University | Illumina | GAIIx | unstranded | 30 | 03/07/2011 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
---|---|---|---|---|---|---|
DCD007159BS | DCD000416SR | whole organism | Wei Lab, Vanderbilt University | AB | Shield | 6 |
Applied Assay ID | Biosample Replicate | Assay |
---|---|---|
DCD002389AA | DCD013902BR | small-RNA-seq_Wei_Lab_0002AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
---|---|---|---|---|---|---|---|
DCD002767SQ | DCD002793TR | Wei Lab, Vanderbilt University | Illumina | GAIIx | unstranded | 30 | 03/07/2011 |
Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Controlled By | anatomical_term | Treatment | Hours Post Fertilization | Mutation Description |
---|---|---|---|---|---|---|---|---|---|---|
DCD007160BS | DCD000416SR | whole organism | Wei Lab, Vanderbilt University | AB | 256-cell | — | — | 2.5 | — |
Applied Assay ID | Biosample Replicate | Assay | Controlled By |
---|---|---|---|
DCD002390AA | DCD013903BR | small-RNA-seq_Wei_Lab_0002AS |
Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Maximum Read Length | Sequencing Date |
---|---|---|---|---|---|---|---|---|---|
DCD002768SQ | DCD002792TR | Wei Lab, Vanderbilt University | Illumina | GAIIx | — | ✘ | unstranded | 30 | 03/07/2011 |