Series Summary for DCD000426SR

ChIP-seq Rad21, RNA-seq comparing WT, Rad21 MO and CTCF MO zebrafish embryos at stages (2.5, 3.3, 4.5, 5.3, 10 hpf) pre and post ZGA and ATAC-seq data: Cohesin facilitates zygotic genome activation in Zebrafish

Case Control

10.1242/dev.156521

GSE84602

Genome binding/occupancy profiling by high throughput sequencingExpression profiling by high throughput sequencing.

True

mickael.dong

July 16, 2018, 7:09 a.m.

Feb. 28, 2019, 12:32 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007222BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Bud 10
Applied Assay ID Biosample Replicate Assay
DCD002611AA DCD013995BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002950SQ DCD002940TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010880DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002612AA DCD013995BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002947SQ DCD002925TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010881DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002621AA DCD013995BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002920SQ DCD002955TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010882DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007223BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002576AA DCD013996BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002930SQ DCD002967TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010877DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002583AA DCD013996BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002924SQ DCD002942TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010879DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002584AA DCD013996BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002948SQ DCD002959TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010878DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007224BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Dome 4.5
Applied Assay ID Biosample Replicate Assay
DCD002617AA DCD014002BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002926SQ DCD002923TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010886DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002618AA DCD014002BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002919SQ DCD002971TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010887DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002619AA DCD014002BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002925SQ DCD002968TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010888DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007225BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 50%-epiboly 5.3
Applied Assay ID Biosample Replicate Assay
DCD002622AA DCD014000BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002941SQ DCD002981TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010883DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002623AA DCD014000BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002903SQ DCD002960TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010884DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002624AA DCD014000BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002902SQ DCD002961TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010885DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007226BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002587AA DCD013991BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002900SQ DCD002951TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010893DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002588AA DCD013991BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002938SQ DCD002928TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010892DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002590AA DCD013991BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002929SQ DCD002978TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010894DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007227BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS High 3.3
Applied Assay ID Biosample Replicate Assay
DCD002585AA DCD013980BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002940SQ DCD002948TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010891DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002586AA DCD013980BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002932SQ DCD002943TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010890DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002620AA DCD013980BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002943SQ DCD002965TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010889DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007228BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Dome 4.5
Applied Assay ID Biosample Replicate Assay
DCD002602AA DCD013985BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002912SQ DCD002937TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010903DT: FASTQ
DCD016988DT: BAM GRCz10/danRer10
DCD017015DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002605AA DCD013985BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002934SQ DCD002936TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010904DT: FASTQ
DCD016995DT: BAM GRCz10/danRer10
DCD017030DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002600AA DCD013987BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002914SQ DCD002929TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010901DT: FASTQ
DCD016734DT: BED GRCz10/danRer10
DCD016735DT: BAM GRCz10/danRer10
DCD016736DT: BIGNARROWPEAK GRCz10/danRer10
DCD016737DT: BIGNARROWPEAK GRCz10/danRer10
DCD017147DT: BAM GRCz10/danRer10
DCD017148DT: BIGNARROWPEAK GRCz10/danRer10
DCD017149DT: BIGNARROWPEAK GRCz10/danRer10
DCD017150DT: BED GRCz10/danRer10
DCD017151DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002603AA DCD013987BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002931SQ DCD002941TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010902DT: FASTQ
DCD016730DT: BED GRCz10/danRer10
DCD016731DT: BAM GRCz10/danRer10
DCD016732DT: BIGNARROWPEAK GRCz10/danRer10
DCD016733DT: BIGNARROWPEAK GRCz10/danRer10
DCD017141DT: BIGNARROWPEAK GRCz10/danRer10
DCD017142DT: BIGNARROWPEAK GRCz10/danRer10
DCD017143DT: BED GRCz10/danRer10
DCD017145DT: BAM GRCz10/danRer10
DCD017146DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007229BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Bud 10
Applied Assay ID Biosample Replicate Assay
DCD002589AA DCD013992BR ChIP-seq_Horsfield_Lab_CTCF_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002891SQ DCD002930TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010895DT: FASTQ
DCD016623DT: BIGNARROWPEAK GRCz11/danRer11
DCD016624DT: BIGNARROWPEAK GRCz11/danRer11
DCD016625DT: BED GRCz11/danRer11
DCD016626DT: BIGWIG GRCz11/danRer11
DCD016628DT: BAM GRCz11/danRer11
DCD016925DT: BIGNARROWPEAK GRCz10/danRer10
DCD016926DT: BIGNARROWPEAK GRCz10/danRer10
DCD016927DT: BED GRCz10/danRer10
DCD016928DT: BAM GRCz10/danRer10
DCD017390DT: BAM GRCz10/danRer10
DCD017391DT: BIGNARROWPEAK GRCz10/danRer10
DCD017392DT: BED GRCz10/danRer10
DCD017393DT: BIGNARROWPEAK GRCz10/danRer10
DCD017395DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002592AA DCD013992BR ChIP-seq_Horsfield_Lab_CTCF_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002910SQ DCD002946TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010896DT: FASTQ
DCD016629DT: BIGNARROWPEAK GRCz11/danRer11
DCD016630DT: BIGNARROWPEAK GRCz11/danRer11
DCD016631DT: BED GRCz11/danRer11
DCD016632DT: BIGWIG GRCz11/danRer11
DCD016633DT: BAM GRCz11/danRer11
DCD016929DT: BAM GRCz10/danRer10
DCD016930DT: BIGNARROWPEAK GRCz10/danRer10
DCD016931DT: BIGNARROWPEAK GRCz10/danRer10
DCD016933DT: BED GRCz10/danRer10
DCD017394DT: BED GRCz10/danRer10
DCD017396DT: BAM GRCz10/danRer10
DCD017397DT: BIGNARROWPEAK GRCz10/danRer10
DCD017398DT: BIGNARROWPEAK GRCz10/danRer10
DCD017401DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002591AA DCD013993BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002916SQ DCD002945TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010897DT: FASTQ
DCD016822DT: BED GRCz10/danRer10
DCD016823DT: BAM GRCz10/danRer10
DCD016824DT: BIGNARROWPEAK GRCz10/danRer10
DCD016825DT: BIGNARROWPEAK GRCz10/danRer10
DCD017262DT: BAM GRCz10/danRer10
DCD017263DT: BIGNARROWPEAK GRCz10/danRer10
DCD017264DT: BED GRCz10/danRer10
DCD017265DT: BIGNARROWPEAK GRCz10/danRer10
DCD017267DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002594AA DCD013993BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002936SQ DCD002949TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010898DT: FASTQ
DCD016826DT: BED GRCz10/danRer10
DCD016827DT: BAM GRCz10/danRer10
DCD016828DT: BIGNARROWPEAK GRCz10/danRer10
DCD016829DT: BIGNARROWPEAK GRCz10/danRer10
DCD017266DT: BED GRCz10/danRer10
DCD017268DT: BAM GRCz10/danRer10
DCD017269DT: BIGNARROWPEAK GRCz10/danRer10
DCD017270DT: BIGNARROWPEAK GRCz10/danRer10
DCD017273DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002593AA DCD013994BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002899SQ DCD002980TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010899DT: FASTQ
DCD016994DT: BAM GRCz10/danRer10
DCD017032DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002601AA DCD013994BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002917SQ DCD002966TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010900DT: FASTQ
DCD016971DT: BAM GRCz10/danRer10
DCD017034DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007230BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002606AA DCD013983BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002894SQ DCD002921TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2500 unstranded 12/02/2017
DCD010907DT: FASTQ
DCD016973DT: BAM GRCz10/danRer10
DCD017038DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002608AA DCD013983BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002921SQ DCD002939TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2500 unstranded 12/02/2017
DCD010908DT: FASTQ
DCD016986DT: BAM GRCz10/danRer10
DCD017006DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002604AA DCD013984BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002928SQ DCD002931TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2500 unstranded 12/02/2017
DCD010905DT: FASTQ
DCD016649DT: BAM GRCz11/danRer11
DCD016921DT: BED GRCz10/danRer10
DCD016922DT: BIGNARROWPEAK GRCz10/danRer10
DCD016923DT: BAM GRCz10/danRer10
DCD016924DT: BIGNARROWPEAK GRCz10/danRer10
DCD017385DT: BED GRCz10/danRer10
DCD017386DT: BAM GRCz10/danRer10
DCD017387DT: BIGNARROWPEAK GRCz10/danRer10
DCD017388DT: BIGNARROWPEAK GRCz10/danRer10
DCD017389DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002607AA DCD013984BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002923SQ DCD002924TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2500 unstranded 12/02/2017
DCD010906DT: FASTQ
DCD016648DT: BAM GRCz11/danRer11
DCD016916DT: BAM GRCz10/danRer10
DCD016918DT: BED GRCz10/danRer10
DCD016919DT: BIGNARROWPEAK GRCz10/danRer10
DCD016920DT: BIGNARROWPEAK GRCz10/danRer10
DCD017379DT: BED GRCz10/danRer10
DCD017381DT: BAM GRCz10/danRer10
DCD017382DT: BIGNARROWPEAK GRCz10/danRer10
DCD017383DT: BIGNARROWPEAK GRCz10/danRer10
DCD017384DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007231BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Bud 10
Applied Assay ID Biosample Replicate Assay
DCD002575AA DCD013981BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002913SQ DCD002938TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010852DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002595AA DCD013981BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002944SQ DCD002932TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010851DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002596AA DCD013981BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002898SQ DCD002934TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010850DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007232BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002628AA DCD013998BR ATAC-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002935SQ DCD002964TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina NextSeq 500 Mid-Output unstranded 12/02/2017
DCD010848DT: FASTQ
DCD018661DT: BIGNARROWPEAK GRCz10/danRer10
DCD018663DT: BAM GRCz10/danRer10
DCD018664DT: BIGNARROWPEAK GRCz10/danRer10
DCD018665DT: BIGWIG GRCz10/danRer10
DCD018669DT: BIGNARROWPEAK GRCz10/danRer10
DCD018671DT: BAM GRCz10/danRer10
DCD018672DT: BIGNARROWPEAK GRCz10/danRer10
DCD018673DT: BIGWIG GRCz10/danRer10
DCD018675DT: BED GRCz10/danRer10
DCD018981DT: BAM GRCz11/danRer11
DCD018982DT: BIGNARROWPEAK GRCz11/danRer11
DCD018983DT: BIGNARROWPEAK GRCz11/danRer11
DCD018984DT: BIGWIG GRCz11/danRer11
DCD018985DT: BED GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002629AA DCD013998BR ATAC-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002895SQ DCD002979TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina NextSeq 500 Mid-Output unstranded 12/02/2017
DCD010849DT: FASTQ
DCD018658DT: BIGNARROWPEAK GRCz10/danRer10
DCD018659DT: BIGNARROWPEAK GRCz10/danRer10
DCD018660DT: BIGWIG GRCz10/danRer10
DCD018662DT: BAM GRCz10/danRer10
DCD018666DT: BIGNARROWPEAK GRCz10/danRer10
DCD018667DT: BIGNARROWPEAK GRCz10/danRer10
DCD018668DT: BIGWIG GRCz10/danRer10
DCD018670DT: BAM GRCz10/danRer10
DCD018674DT: BED GRCz10/danRer10
DCD018976DT: BIGNARROWPEAK GRCz11/danRer11
DCD018977DT: BIGNARROWPEAK GRCz11/danRer11
DCD018978DT: BED GRCz11/danRer11
DCD018979DT: BIGWIG GRCz11/danRer11
DCD018980DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007233BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Dome 4.5
Applied Assay ID Biosample Replicate Assay
DCD002599AA DCD013989BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002939SQ DCD002952TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010858DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002625AA DCD013989BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002915SQ DCD002947TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010856DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002626AA DCD013989BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002904SQ DCD002977TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010857DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007234BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 50%-epiboly 5.3
Applied Assay ID Biosample Replicate Assay
DCD002577AA DCD013990BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002922SQ DCD002954TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010854DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002633AA DCD013990BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002908SQ DCD002976TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010855DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002634AA DCD013990BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002897SQ DCD002935TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010853DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007235BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002613AA DCD014001BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002892SQ DCD002927TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010864DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002615AA DCD014001BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002893SQ DCD002956TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010862DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002616AA DCD014001BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002927SQ DCD002922TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010863DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007236BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS High 3.3
Applied Assay ID Biosample Replicate Assay
DCD002574AA DCD013986BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002901SQ DCD002950TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010859DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002627AA DCD013986BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002918SQ DCD002973TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010860DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002631AA DCD013986BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002933SQ DCD002953TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010861DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007237BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 50%-epiboly 5.3
Applied Assay ID Biosample Replicate Assay
DCD002598AA DCD013982BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002937SQ DCD002944TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010870DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002609AA DCD013982BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002909SQ DCD002933TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010868DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002610AA DCD013982BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002946SQ DCD002970TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010869DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007238BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Bud 10
Applied Assay ID Biosample Replicate Assay
DCD002614AA DCD013988BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002949SQ DCD002957TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010865DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002630AA DCD013988BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002951SQ DCD002975TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010866DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002632AA DCD013988BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002945SQ DCD002926TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010867DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007239BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS High 3.3
Applied Assay ID Biosample Replicate Assay
DCD002578AA DCD013997BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002911SQ DCD002969TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010876DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002579AA DCD013997BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002942SQ DCD002962TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010875DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002580AA DCD013997BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002905SQ DCD002974TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010874DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007240BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Dome 4.5
Applied Assay ID Biosample Replicate Assay
DCD002581AA DCD013999BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002907SQ DCD002958TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010873DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002582AA DCD013999BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002906SQ DCD002963TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010872DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002597AA DCD013999BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002896SQ DCD002972TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 unstranded 12/02/2017
DCD010871DT: FASTQ