Series Summary for DCD000426SR

ChIP-seq Rad21, RNA-seq comparing WT, Rad21 MO and CTCF MO zebrafish embryos at stages (2.5, 3.3, 4.5, 5.3, 10 hpf) pre and post ZGA and ATAC-seq data: Cohesin facilitates zygotic genome activation in Zebrafish

Case Control

10.1242/dev.156521

GSE84602

Genome binding/occupancy profiling by high throughput sequencingExpression profiling by high throughput sequencing.

True

mickael.dong

July 16, 2018, 7:09 a.m.

Feb. 28, 2019, 12:32 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007222BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Bud 10
Applied Assay ID Biosample Replicate Assay
DCD002611AA DCD013995BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002950SQ DCD002940TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010880DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002612AA DCD013995BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002947SQ DCD002925TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010881DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002621AA DCD013995BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002920SQ DCD002955TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010882DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007223BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002576AA DCD013996BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002930SQ DCD002967TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010877DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002583AA DCD013996BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002924SQ DCD002942TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010879DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002584AA DCD013996BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002948SQ DCD002959TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010878DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007224BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Dome 4.5
Applied Assay ID Biosample Replicate Assay
DCD002617AA DCD014002BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002926SQ DCD002923TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010886DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002618AA DCD014002BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002919SQ DCD002971TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010887DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002619AA DCD014002BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002925SQ DCD002968TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010888DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007225BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 50%-epiboly 5.3
Applied Assay ID Biosample Replicate Assay
DCD002622AA DCD014000BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002941SQ DCD002981TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010883DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002623AA DCD014000BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002903SQ DCD002960TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010884DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002624AA DCD014000BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002902SQ DCD002961TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010885DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007226BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002587AA DCD013991BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002900SQ DCD002951TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010893DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002588AA DCD013991BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002938SQ DCD002928TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010892DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002590AA DCD013991BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002929SQ DCD002978TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010894DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007227BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS High 3.3
Applied Assay ID Biosample Replicate Assay
DCD002585AA DCD013980BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002940SQ DCD002948TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010891DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002586AA DCD013980BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002932SQ DCD002943TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010890DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002620AA DCD013980BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002943SQ DCD002965TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010889DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007228BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Dome 4.5
Applied Assay ID Biosample Replicate Assay
DCD002602AA DCD013985BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002912SQ DCD002937TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010903DT: FASTQ
DCD016988DT: BAM GRCz10/danRer10
DCD017015DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002605AA DCD013985BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002934SQ DCD002936TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010904DT: FASTQ
DCD016995DT: BAM GRCz10/danRer10
DCD017030DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002600AA DCD013987BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002914SQ DCD002929TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010901DT: FASTQ
DCD016734DT: BED GRCz10/danRer10
DCD016735DT: BAM GRCz10/danRer10
DCD016736DT: BIGNARROWPEAK GRCz10/danRer10
DCD016737DT: BIGNARROWPEAK GRCz10/danRer10
DCD017147DT: BAM GRCz10/danRer10
DCD017148DT: BIGNARROWPEAK GRCz10/danRer10
DCD017149DT: BIGNARROWPEAK GRCz10/danRer10
DCD017150DT: BED GRCz10/danRer10
DCD017151DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002603AA DCD013987BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002931SQ DCD002941TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010902DT: FASTQ
DCD016730DT: BED GRCz10/danRer10
DCD016731DT: BAM GRCz10/danRer10
DCD016732DT: BIGNARROWPEAK GRCz10/danRer10
DCD016733DT: BIGNARROWPEAK GRCz10/danRer10
DCD017141DT: BIGNARROWPEAK GRCz10/danRer10
DCD017142DT: BIGNARROWPEAK GRCz10/danRer10
DCD017143DT: BED GRCz10/danRer10
DCD017145DT: BAM GRCz10/danRer10
DCD017146DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007229BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Bud 10
Applied Assay ID Biosample Replicate Assay
DCD002589AA DCD013992BR ChIP-seq_Horsfield_Lab_CTCF_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002891SQ DCD002930TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010895DT: FASTQ
DCD016623DT: BIGNARROWPEAK GRCz11/danRer11
DCD016624DT: BIGNARROWPEAK GRCz11/danRer11
DCD016625DT: BED GRCz11/danRer11
DCD016626DT: BIGWIG GRCz11/danRer11
DCD016628DT: BAM GRCz11/danRer11
DCD016925DT: BIGNARROWPEAK GRCz10/danRer10
DCD016926DT: BIGNARROWPEAK GRCz10/danRer10
DCD016927DT: BED GRCz10/danRer10
DCD016928DT: BAM GRCz10/danRer10
DCD017390DT: BAM GRCz10/danRer10
DCD017391DT: BIGNARROWPEAK GRCz10/danRer10
DCD017392DT: BED GRCz10/danRer10
DCD017393DT: BIGNARROWPEAK GRCz10/danRer10
DCD017395DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002592AA DCD013992BR ChIP-seq_Horsfield_Lab_CTCF_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002910SQ DCD002946TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010896DT: FASTQ
DCD016629DT: BIGNARROWPEAK GRCz11/danRer11
DCD016630DT: BIGNARROWPEAK GRCz11/danRer11
DCD016631DT: BED GRCz11/danRer11
DCD016632DT: BIGWIG GRCz11/danRer11
DCD016633DT: BAM GRCz11/danRer11
DCD016929DT: BAM GRCz10/danRer10
DCD016930DT: BIGNARROWPEAK GRCz10/danRer10
DCD016931DT: BIGNARROWPEAK GRCz10/danRer10
DCD016933DT: BED GRCz10/danRer10
DCD017394DT: BED GRCz10/danRer10
DCD017396DT: BAM GRCz10/danRer10
DCD017397DT: BIGNARROWPEAK GRCz10/danRer10
DCD017398DT: BIGNARROWPEAK GRCz10/danRer10
DCD017401DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002591AA DCD013993BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002916SQ DCD002945TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010897DT: FASTQ
DCD016822DT: BED GRCz10/danRer10
DCD016823DT: BAM GRCz10/danRer10
DCD016824DT: BIGNARROWPEAK GRCz10/danRer10
DCD016825DT: BIGNARROWPEAK GRCz10/danRer10
DCD017262DT: BAM GRCz10/danRer10
DCD017263DT: BIGNARROWPEAK GRCz10/danRer10
DCD017264DT: BED GRCz10/danRer10
DCD017265DT: BIGNARROWPEAK GRCz10/danRer10
DCD017267DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002594AA DCD013993BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002936SQ DCD002949TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010898DT: FASTQ
DCD016826DT: BED GRCz10/danRer10
DCD016827DT: BAM GRCz10/danRer10
DCD016828DT: BIGNARROWPEAK GRCz10/danRer10
DCD016829DT: BIGNARROWPEAK GRCz10/danRer10
DCD017266DT: BED GRCz10/danRer10
DCD017268DT: BAM GRCz10/danRer10
DCD017269DT: BIGNARROWPEAK GRCz10/danRer10
DCD017270DT: BIGNARROWPEAK GRCz10/danRer10
DCD017273DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002593AA DCD013994BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002899SQ DCD002980TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010899DT: FASTQ
DCD016994DT: BAM GRCz10/danRer10
DCD017032DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002601AA DCD013994BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002917SQ DCD002966TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010900DT: FASTQ
DCD016971DT: BAM GRCz10/danRer10
DCD017034DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007230BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002606AA DCD013983BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002894SQ DCD002921TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2500 12/02/2017
DCD010907DT: FASTQ
DCD016973DT: BAM GRCz10/danRer10
DCD017038DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002608AA DCD013983BR ChIP-seq_Horsfield_Lab_input_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002921SQ DCD002939TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2500 12/02/2017
DCD010908DT: FASTQ
DCD016986DT: BAM GRCz10/danRer10
DCD017006DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002604AA DCD013984BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002928SQ DCD002931TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2500 12/02/2017
DCD010905DT: FASTQ
DCD016649DT: BAM GRCz11/danRer11
DCD016921DT: BED GRCz10/danRer10
DCD016922DT: BIGNARROWPEAK GRCz10/danRer10
DCD016923DT: BAM GRCz10/danRer10
DCD016924DT: BIGNARROWPEAK GRCz10/danRer10
DCD017385DT: BED GRCz10/danRer10
DCD017386DT: BAM GRCz10/danRer10
DCD017387DT: BIGNARROWPEAK GRCz10/danRer10
DCD017388DT: BIGNARROWPEAK GRCz10/danRer10
DCD017389DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002607AA DCD013984BR ChIP-seq_Horsfield_Lab_Rad21_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002923SQ DCD002924TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2500 12/02/2017
DCD010906DT: FASTQ
DCD016648DT: BAM GRCz11/danRer11
DCD016916DT: BAM GRCz10/danRer10
DCD016918DT: BED GRCz10/danRer10
DCD016919DT: BIGNARROWPEAK GRCz10/danRer10
DCD016920DT: BIGNARROWPEAK GRCz10/danRer10
DCD017379DT: BED GRCz10/danRer10
DCD017381DT: BAM GRCz10/danRer10
DCD017382DT: BIGNARROWPEAK GRCz10/danRer10
DCD017383DT: BIGNARROWPEAK GRCz10/danRer10
DCD017384DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007231BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Bud 10
Applied Assay ID Biosample Replicate Assay
DCD002575AA DCD013981BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002913SQ DCD002938TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010852DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002595AA DCD013981BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002944SQ DCD002932TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010851DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002596AA DCD013981BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002898SQ DCD002934TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010850DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007232BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002628AA DCD013998BR ATAC-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002935SQ DCD002964TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina NextSeq 500 Mid-Output 12/02/2017
DCD010848DT: FASTQ
DCD018661DT: BIGNARROWPEAK GRCz10/danRer10
DCD018663DT: BAM GRCz10/danRer10
DCD018664DT: BIGNARROWPEAK GRCz10/danRer10
DCD018665DT: BIGWIG GRCz10/danRer10
DCD018669DT: BIGNARROWPEAK GRCz10/danRer10
DCD018671DT: BAM GRCz10/danRer10
DCD018672DT: BIGNARROWPEAK GRCz10/danRer10
DCD018673DT: BIGWIG GRCz10/danRer10
DCD018675DT: BED GRCz10/danRer10
DCD018981DT: BAM GRCz11/danRer11
DCD018982DT: BIGNARROWPEAK GRCz11/danRer11
DCD018983DT: BIGNARROWPEAK GRCz11/danRer11
DCD018984DT: BIGWIG GRCz11/danRer11
DCD018985DT: BED GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002629AA DCD013998BR ATAC-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002895SQ DCD002979TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina NextSeq 500 Mid-Output 12/02/2017
DCD010849DT: FASTQ
DCD018658DT: BIGNARROWPEAK GRCz10/danRer10
DCD018659DT: BIGNARROWPEAK GRCz10/danRer10
DCD018660DT: BIGWIG GRCz10/danRer10
DCD018662DT: BAM GRCz10/danRer10
DCD018666DT: BIGNARROWPEAK GRCz10/danRer10
DCD018667DT: BIGNARROWPEAK GRCz10/danRer10
DCD018668DT: BIGWIG GRCz10/danRer10
DCD018670DT: BAM GRCz10/danRer10
DCD018674DT: BED GRCz10/danRer10
DCD018976DT: BIGNARROWPEAK GRCz11/danRer11
DCD018977DT: BIGNARROWPEAK GRCz11/danRer11
DCD018978DT: BED GRCz11/danRer11
DCD018979DT: BIGWIG GRCz11/danRer11
DCD018980DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007233BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Dome 4.5
Applied Assay ID Biosample Replicate Assay
DCD002599AA DCD013989BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002939SQ DCD002952TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010858DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002625AA DCD013989BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002915SQ DCD002947TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010856DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002626AA DCD013989BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002904SQ DCD002977TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010857DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007234BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 50%-epiboly 5.3
Applied Assay ID Biosample Replicate Assay
DCD002577AA DCD013990BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002922SQ DCD002954TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010854DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002633AA DCD013990BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002908SQ DCD002976TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010855DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002634AA DCD013990BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002897SQ DCD002935TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010853DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007235BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD002613AA DCD014001BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002892SQ DCD002927TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010864DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002615AA DCD014001BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002893SQ DCD002956TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010862DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002616AA DCD014001BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002927SQ DCD002922TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010863DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007236BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS High 3.3
Applied Assay ID Biosample Replicate Assay
DCD002574AA DCD013986BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002901SQ DCD002950TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010859DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002627AA DCD013986BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002918SQ DCD002973TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010860DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002631AA DCD013986BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002933SQ DCD002953TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010861DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007237BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS 50%-epiboly 5.3
Applied Assay ID Biosample Replicate Assay
DCD002598AA DCD013982BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002937SQ DCD002944TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010870DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002609AA DCD013982BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002909SQ DCD002933TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010868DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002610AA DCD013982BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002946SQ DCD002970TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010869DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007238BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Bud 10
Applied Assay ID Biosample Replicate Assay
DCD002614AA DCD013988BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002949SQ DCD002957TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010865DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002630AA DCD013988BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002951SQ DCD002975TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010866DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002632AA DCD013988BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002945SQ DCD002926TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010867DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007239BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS High 3.3
Applied Assay ID Biosample Replicate Assay
DCD002578AA DCD013997BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002911SQ DCD002969TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010876DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002579AA DCD013997BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002942SQ DCD002962TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010875DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002580AA DCD013997BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002905SQ DCD002974TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010874DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007240BS DCD000426SR whole organism Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB/PS Dome 4.5
Applied Assay ID Biosample Replicate Assay
DCD002581AA DCD013999BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002907SQ DCD002958TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010873DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002582AA DCD013999BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002906SQ DCD002963TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010872DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002597AA DCD013999BR RNA-seq_Horsfield_Lab_0004AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002896SQ DCD002972TR Horsfield Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 12/02/2017
DCD010871DT: FASTQ