Series Summary for DCD000072SR

Active DNA demethylation at enhancers during the vertebrate phylotypic period (MethylC-Seq, ATAC-seq, TAB-seq, RNA-seq)

Case Control

10.1038/ng.3522

GSE68087

MethylC-Seq, TAB-seq, ATAC-seq and RNA-seq in zebrafish embryos. Also, MethylC-Seq in zebrafish tissues

True

panosfirbas

May 6, 2016, 5:15 a.m.

Feb. 28, 2019, 12:46 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD000152BS DCD000072SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD000589AA DCD000459BR ATAC-seq_Skarmeta_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000394SQ DCD000597TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2015
DCD000158DT: FASTQ
DCD007781DT: BED GRCz10/danRer10
DCD007784DT: BIGWIG GRCz10/danRer10
DCD007785DT: BIGWIG GRCz10/danRer10
DCD007786DT: BED GRCz10/danRer10
DCD007787DT: BIGWIG GRCz10/danRer10
DCD007789DT: LOG GRCz10/danRer10
DCD007790DT: LOG GRCz10/danRer10
DCD007791DT: LOG GRCz10/danRer10
DCD007792DT: LOG GRCz10/danRer10
DCD007793DT: BED GRCz10/danRer10
DCD007794DT: LOG GRCz10/danRer10
DCD007795DT: LOG GRCz10/danRer10
DCD007796DT: LOG GRCz10/danRer10
DCD007797DT: LOG GRCz10/danRer10
DCD007798DT: LOG GRCz10/danRer10
DCD007799DT: BED GRCz10/danRer10
DCD007800DT: BED GRCz10/danRer10
DCD007801DT: BED GRCz10/danRer10
DCD007802DT: BED GRCz10/danRer10
DCD007803DT: BED GRCz10/danRer10
DCD007804DT: BED GRCz10/danRer10
DCD007805DT: BED GRCz10/danRer10
DCD007806DT: BED GRCz10/danRer10
DCD007807DT: BIGWIG GRCz10/danRer10
DCD007808DT: BIGWIG GRCz10/danRer10
DCD007835DT: BAM GRCz10/danRer10
DCD007836DT: BAM GRCz10/danRer10
DCD008904DT: BIGNARROWPEAK GRCz10/danRer10
DCD018705DT: BIGNARROWPEAK GRCz10/danRer10
DCD018706DT: BIGNARROWPEAK GRCz10/danRer10
DCD018707DT: BIGWIG GRCz10/danRer10
DCD018708DT: BED GRCz10/danRer10
DCD018715DT: BAM GRCz10/danRer10
DCD019013DT: BIGNARROWPEAK GRCz11/danRer11
DCD019016DT: BIGNARROWPEAK GRCz11/danRer11
DCD019017DT: BED GRCz11/danRer11
DCD019018DT: BIGWIG GRCz11/danRer11
DCD019027DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000590AA DCD000460BR ATAC-seq_Skarmeta_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000395SQ DCD000598TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2015
DCD000162DT: FASTQ
DCD007700DT: BED GRCz10/danRer10
DCD007701DT: BED GRCz10/danRer10
DCD007702DT: BED GRCz10/danRer10
DCD007703DT: BIGWIG GRCz10/danRer10
DCD007704DT: BIGWIG GRCz10/danRer10
DCD007705DT: BIGWIG GRCz10/danRer10
DCD007706DT: BAM GRCz10/danRer10
DCD007708DT: LOG GRCz10/danRer10
DCD007709DT: LOG GRCz10/danRer10
DCD007710DT: BIGWIG GRCz10/danRer10
DCD007711DT: LOG GRCz10/danRer10
DCD007712DT: LOG GRCz10/danRer10
DCD007713DT: LOG GRCz10/danRer10
DCD007714DT: LOG GRCz10/danRer10
DCD007715DT: LOG GRCz10/danRer10
DCD007716DT: LOG GRCz10/danRer10
DCD007717DT: LOG GRCz10/danRer10
DCD007718DT: BED GRCz10/danRer10
DCD007719DT: BED GRCz10/danRer10
DCD007720DT: BED GRCz10/danRer10
DCD007721DT: BED GRCz10/danRer10
DCD007722DT: BED GRCz10/danRer10
DCD007723DT: BED GRCz10/danRer10
DCD007724DT: BED GRCz10/danRer10
DCD007725DT: BED GRCz10/danRer10
DCD007726DT: BIGWIG GRCz10/danRer10
DCD007788DT: BAM GRCz10/danRer10
DCD008903DT: BIGNARROWPEAK GRCz10/danRer10
DCD018710DT: BAM GRCz10/danRer10
DCD018711DT: BIGNARROWPEAK GRCz10/danRer10
DCD018712DT: BIGNARROWPEAK GRCz10/danRer10
DCD018713DT: BIGWIG GRCz10/danRer10
DCD018714DT: BED GRCz10/danRer10
DCD019019DT: BED GRCz11/danRer11
DCD019020DT: BIGNARROWPEAK GRCz11/danRer11
DCD019021DT: BIGNARROWPEAK GRCz11/danRer11
DCD019023DT: BAM GRCz11/danRer11
DCD019024DT: BIGWIG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006644BS DCD000072SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Long-pec 48
Applied Assay ID Biosample Replicate Assay
DCD001404AA DCD012900BR MethylC-seq_Lister_lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001221SQ DCD001429TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000885DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001222SQ DCD001429TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000882DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001230SQ DCD001429TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000881DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001233SQ DCD001429TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000884DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001240SQ DCD001429TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000886DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001270SQ DCD001429TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000883DT: FASTQ
DCD018639DT: BEDGRAPH GRCz10/danRer10
DCD018641DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD002967AA DCD014385BR TAB-seq_Lister_lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003306SQ DCD003460TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD017686DT: FASTQ
DCD018652DT: BEDGRAPH GRCz10/danRer10
DCD018655DT: BIGWIG GRCz10/danRer10
DCD018656DT: BEDGRAPH GRCz10/danRer10
DCD018657DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006645BS DCD000072SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD001401AA DCD012898BR TAB-seq_Lister_lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001214SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000873DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001215SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000879DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001216SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000875DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001218SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000871DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001227SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000877DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001229SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000874DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001256SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000869DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001257SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000868DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001259SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000880DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001261SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000878DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001264SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000867DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001265SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000870DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001266SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000866DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001267SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000872DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001269SQ DCD001421TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2015
DCD000876DT: FASTQ
DCD018637DT: BEDGRAPH GRCz10/danRer10
DCD018640DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006646BS DCD000072SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD001405AA DCD012895BR MethylC-seq_Lister_lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001212SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001008DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001242SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000968DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001243SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000970DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001244SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000973DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001245SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000976DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001272SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000996DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001273SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000995DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001274SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001005DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001275SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001001DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001276SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000988DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001277SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000985DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001278SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000992DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001279SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000990DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001282SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000981DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001283SQ DCD001425TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000979DT: FASTQ
DCD018646DT: BEDGRAPH GRCz10/danRer10
DCD018649DT: BIGWIG GRCz10/danRer10
Applied Assay ID Biosample Replicate Assay
DCD001406AA DCD012896BR MethylC-seq_Lister_lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001220SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000928DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001225SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000930DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001228SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000946DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001231SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000943DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001234SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000953DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001235SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000959DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001236SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000963DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001237SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000964DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001239SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000935DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001254SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000925DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001262SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000918DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001268SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000939DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001280SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000947DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001281SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000921DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001284SQ DCD001424TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD000950DT: FASTQ
DCD018650DT: BEDGRAPH GRCz10/danRer10
DCD018651DT: BEDGRAPH GRCz10/danRer10
DCD018653DT: BIGWIG GRCz10/danRer10
DCD018654DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006647BS DCD000072SR tissue Sauka-Spengler Lab, University of Oxford AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD001403AA DCD012903BR MethylC-seq_Lister_lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001209SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000887DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001210SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000889DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001211SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000891DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001213SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000909DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001217SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000911DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001219SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000914DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001223SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000906DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001224SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000899DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001226SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000901DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001232SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000897DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001238SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000892DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001241SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000902DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001252SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000896DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001255SQ DCD001427TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2014
DCD000894DT: FASTQ
DCD018644DT: BEDGRAPH GRCz10/danRer10
DCD018647DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006648BS DCD000072SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU 90%-epiboly 8.5
Applied Assay ID Biosample Replicate Assay
DCD001407AA DCD012899BR MethylC-seq_Lister_lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001246SQ DCD001423TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001020DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001247SQ DCD001423TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001015DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001248SQ DCD001423TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001024DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001249SQ DCD001423TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001021DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001250SQ DCD001423TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001029DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001251SQ DCD001423TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001025DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001253SQ DCD001423TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001031DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001258SQ DCD001423TR Lister lab, University of Western Australia Illumina HiSeq 1500 01/01/2013
DCD001012DT: FASTQ
DCD018638DT: BEDGRAPH GRCz10/danRer10
DCD018643DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007257BS DCD000072SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD002669AA DCD014035BR RNA-seq_Skarmeta_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003069SQ DCD003099TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 1500 01/30/2016
DCD011066DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002667AA DCD014037BR RNA-seq_Skarmeta_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003070SQ DCD003100TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 1500 01/30/2016
DCD011065DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007258BS DCD000072SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD002670AA DCD014036BR RNA-seq_Skarmeta_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003071SQ DCD003101TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 1500 01/30/2016
DCD011068DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002668AA DCD014038BR RNA-seq_Skarmeta_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003068SQ DCD003098TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 1500 01/30/2016
DCD011067DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007260BS DCD000072SR whole organism Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD002673AA DCD014041BR ATAC-seq_Skarmeta_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003074SQ DCD003104TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2015
DCD011069DT: FASTQ
DCD018716DT: BIGNARROWPEAK GRCz10/danRer10
DCD018717DT: BIGNARROWPEAK GRCz10/danRer10
DCD018718DT: BIGWIG GRCz10/danRer10
DCD018719DT: BED GRCz10/danRer10
DCD018720DT: BAM GRCz10/danRer10
DCD019025DT: BIGNARROWPEAK GRCz11/danRer11
DCD019026DT: BED GRCz11/danRer11
DCD019028DT: BIGNARROWPEAK GRCz11/danRer11
DCD019029DT: BAM GRCz11/danRer11
DCD019030DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002674AA DCD014042BR ATAC-seq_Skarmeta_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003075SQ DCD003105TR Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo Illumina HiSeq 2000 01/01/2015
DCD011070DT: FASTQ
DCD018721DT: BIGNARROWPEAK GRCz10/danRer10
DCD018722DT: BIGNARROWPEAK GRCz10/danRer10
DCD018723DT: BIGWIG GRCz10/danRer10
DCD018724DT: BED GRCz10/danRer10
DCD018725DT: BAM GRCz10/danRer10
DCD019031DT: BED GRCz11/danRer11
DCD019032DT: BIGNARROWPEAK GRCz11/danRer11
DCD019033DT: BIGNARROWPEAK GRCz11/danRer11
DCD019034DT: BAM GRCz11/danRer11
DCD019035DT: BIGWIG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007394BS DCD000072SR tissue Skarmeta Lab, Centro Andaluz de Biologia del Desarrollo AB/TU 90 Days-2 Years adult
Applied Assay ID Biosample Replicate Assay
DCD002966AA DCD014384BR MethylC-seq_Lister_lab_DNA_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003305SQ DCD003458TR Lister lab, University of Western Australia Illumina HiSeq 1500 unstranded 100 01/29/2016
DCD017678DT: FASTQ
DCD018645DT: BEDGRAPH GRCz10/danRer10
DCD018648DT: BIGWIG GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003298SQ DCD003456TR Lister lab, University of Western Australia Illumina HiSeq 1500 unstranded 100 01/29/2016
DCD017683DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003301SQ DCD003455TR Lister lab, University of Western Australia Illumina HiSeq 1500 unstranded 100 01/29/2016
DCD017684DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003297SQ DCD003454TR Lister lab, University of Western Australia Illumina HiSeq 1500 unstranded 100 01/29/2016
DCD017685DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003302SQ DCD003453TR Lister lab, University of Western Australia Illumina HiSeq 1500 unstranded 100 01/29/2016
DCD017679DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003304SQ DCD003452TR Lister lab, University of Western Australia Illumina HiSeq 1500 unstranded 100 01/29/2016
DCD017680DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003299SQ DCD003451TR Lister lab, University of Western Australia Illumina HiSeq 1500 unstranded 100 01/29/2016
DCD017681DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003300SQ DCD003450TR Lister lab, University of Western Australia Illumina HiSeq 1500 unstranded 100 01/29/2016
DCD017682DT: FASTQ