CAGE-seq tracks

This is a CAGE-seq super track that groups together signal (bigWig format) and tag cluster regions (bigBed format). These tracks were produced by the DANIO-CODE CAGE-seq pipeline.

The main processing pipeline of the DCC ("CAGE_pipeline_v1.6") consists of 4 different processing steps :

#.Sequence quality filtering / trimming (FastQC) #.Mapping to the reference genome (Bowtie) #.Tag clustering (Paraclu-9)

There is also an additional signal conversion step for reformatting the input from the main pipeline to adequate UCSC track input format (DANIO-CODE CAGE-seq signal conversion pipeline v1.0).

Track definition:

CAGE-seq tracks consist of 2 parts: #. CAGE-seq TSS signals #. and CAGE-seq tag clusters

For more information on how the data were processed, please refer here <https://gitlab.com/da-bar/DANIO-CODE_CAGE-seq>.