Data summary for DCD010411DT from sequencing run DCD002475SQ

LOG

GRCz10/danRer10

DANIO-CODE_RNA-Seq_ver_1.1|STAR_2.5.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --readFilesIn RNA-seq_Liangbiao_Lab_0001AS.DCD002475SQ.USERmickael.dong.R1.fastq RNA-seq_Liangbiao_Lab_0001AS.DCD002475SQ.USERmickael.dong.R2.fastq --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --genomeLoad NoSharedMemory --seedSearchStartLmax 12 --outWigStrand Stranded --outSAMtype BAM SortedByCoordinate --runThreadN 16 --limitBAMsortRAM 91952393078 --outFilterMismatchNmax 33 --quantMode GeneCounts --outFilterType BySJout --outWigType bedGraph

freeze-03

danio-user

June 9, 2018, 1:05 a.m.

Nov. 27, 2018, 7:17 a.m.

This data is part of series

  • DCD000391SR titled RNA-seq data from 8 different tissues (28dC): Global identification of the gene networks and cis-regulatory elements of the cold response in zebrafish