Data summary for DCD014325DT from sequencing run DCD001016SQ

LOG

GRCz11/danRer11

DANIO-CODE_RNA-Seq_ver_1.2|STAR_2.6.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --outFilterMismatchNmax 33 --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --quantMode GeneCounts --seedSearchStartLmax 12 --outSAMtype BAM SortedByCoordinate --runThreadN 16 --limitBAMsortRAM 300000000000 --limitOutSJcollapsed 2000000 --readFilesIn RNA-seq_Zon_Lab_0002AS.DCD001016SQ.USERsyang.R1.fastq RNA-seq_Zon_Lab_0002AS.DCD001016SQ.USERsyang.R2.fastq --genomeLoad NoSharedMemory --outFilterType BySJout --outWigType bedGraph --outWigStrand Unstranded

freeze-03

ak.mukarram

Oct. 22, 2018, 6:23 p.m.

Nov. 21, 2018, 1:45 a.m.

This data is part of series

  • DCD000207SR titled A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation [zebrafish ChIP-seq, ATAC-seq, RNA-seq]