file type: TSV

Mapped genome: GRCz10/danRer10

Command: DANIO-CODE_RNA-Seq_ver_1.0|STAR_2.5.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --readFilesIn RNA-seq_Giraldez_Lab_0001AS.DCD000699SQ.USERgiraldezlab.R1.fastq --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --genomeLoad NoSharedMemory --seedSearchStartLmax 12 --outWigStrand Stranded --outSAMtype BAM SortedByCoordinate --runThreadN 16 --outFilterMismatchNmax 33 --quantMode GeneCounts --outFilterType BySJout --outWigType bedGraph

Version: freeze-01, freeze-02, freeze-03

Added by User: danio-user

Date Added: March 19, 2017, 1:35 p.m.

Last Edited: Nov. 20, 2018, 4:40 a.m.