file type: TSV

Mapped genome: GRCz10/danRer10

Command: DANIO-CODE_RNA-Seq_ver_1.1|STAR_2.5.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --readFilesIn RNA-seq_Busch-Nentwich_Lab_0003AS.DCD002172SQ.USERdanio-user.R1.fastq RNA-seq_Busch-Nentwich_Lab_0003AS.DCD002172SQ.USERdanio-user.R2.fastq --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --genomeLoad NoSharedMemory --seedSearchStartLmax 12 --outWigStrand Stranded --outSAMtype BAM SortedByCoordinate --runThreadN 16 --limitBAMsortRAM 91952393078 --outFilterMismatchNmax 33 --quantMode GeneCounts --outFilterType BySJout --outWigType bedGraph

Version: freeze-01, freeze-02, freeze-03

Added by User: danio-user

Date Added: June 21, 2017, 12:50 p.m.

Last Edited: Nov. 26, 2018, 5:37 a.m.