Series Summary for DCD000138SR

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

Survey

10.1002/embj.201488411

GSE53693

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

True

giraldezlab

May 6, 2016, 9:36 a.m.

Aug. 8, 2018, 6:08 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006184BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD000917AA DCD012280BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000685SQ DCD000857TR Giraldez Lab, Yale Illumina HiSeq 2500 forward 03/25/2013
DCD000446DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000686SQ DCD000857TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/05/2013
DCD000445DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006200BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU 30%-epiboly 5
Applied Assay ID Biosample Replicate Assay
DCD000849AA DCD012296BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000698SQ DCD000873TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/05/2013
DCD000465DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000713SQ DCD000873TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 08/17/2012
DCD000467DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000717SQ DCD000873TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 01/15/2013
DCD000466DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000870AA DCD012317BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000735SQ DCD000894TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 08/17/2012
DCD000464DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000774SQ DCD000894TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 01/15/2013
DCD000463DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000775SQ DCD000894TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/05/2013
DCD000462DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006206BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD000855AA DCD012302BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000758SQ DCD000879TR Giraldez Lab, Yale Illumina HiSeq 2500 forward 02/05/2013
DCD000453DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000759SQ DCD000879TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/05/2013
DCD000452DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006211BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU 5-9 somites 12
Applied Assay ID Biosample Replicate Assay
DCD000860AA DCD012307BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000692SQ DCD000884TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/05/2013
DCD000454DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000693SQ DCD000884TR Giraldez Lab, Yale Illumina HiSeq 2500 forward 02/05/2013
DCD000455DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006214BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU Long-pec 48
Applied Assay ID Biosample Replicate Assay
DCD000863AA DCD012310BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000795SQ DCD000887TR Giraldez Lab, Yale Illumina HiSeq 2500 forward 02/05/2013
DCD000451DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000796SQ DCD000887TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/23/2013
DCD000450DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006215BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU 30%-epiboly 5
Applied Assay ID Biosample Replicate Assay
DCD000864AA DCD012311BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000805SQ DCD000888TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 08/17/2012
DCD000461DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000867AA DCD012314BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000800SQ DCD000891TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 08/17/2012
DCD000460DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006216BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU 64-cell 2
Applied Assay ID Biosample Replicate Assay
DCD000865AA DCD012312BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000665SQ DCD000889TR Giraldez Lab, Yale Illumina HiSeq 2500 forward 03/25/2013
DCD000442DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000689SQ DCD000889TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/23/2013
DCD000440DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000690SQ DCD000889TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/05/2013
DCD000441DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000694SQ DCD000889TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/23/2013
DCD000439DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006222BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU 30%-epiboly 5
Applied Assay ID Biosample Replicate Assay
DCD000871AA DCD012318BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000658SQ DCD000895TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/23/2013
DCD000458DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000750SQ DCD000895TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 08/17/2012
DCD000459DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006232BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU 5-9 somites 12
Applied Assay ID Biosample Replicate Assay
DCD000852AA DCD012299BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000761SQ DCD000876TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/05/2013
DCD000447DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000763SQ DCD000876TR Giraldez Lab, Yale Illumina HiSeq 2500 forward 03/25/2013
DCD000448DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD000881AA DCD012328BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000724SQ DCD000905TR Giraldez Lab, Yale Illumina HiSeq 2500 forward 03/12/2013
DCD000449DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006254BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU 64-cell 2
Applied Assay ID Biosample Replicate Assay
DCD000903AA DCD012350BR RNA-seq_Giraldez_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000734SQ DCD000927TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/05/2013
DCD000456DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000753SQ DCD000927TR Giraldez Lab, Yale Illumina HiSeq 2500 forward 02/05/2013
DCD000457DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Anatomical Term Hours Post Fertilization
DCD006261BS DCD000138SR whole organism Giraldez Lab, Yale AB/TU Long-pec 48
Applied Assay ID Biosample Replicate Assay
DCD000910AA DCD012357BR Ribo-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000725SQ DCD000934TR Giraldez Lab, Yale Illumina HiSeq 2000 forward 04/05/2013
DCD000443DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Sequencing Date
DCD000730SQ DCD000934TR Giraldez Lab, Yale Illumina HiSeq 2500 forward 03/25/2013
DCD000444DT: FASTQ