Series Summary for DCD000142SR

Upstream ORFs are prevalent translational repressors in vertebrates.

Survey

10.15252/embj.201592759

SRP067139

Upstream ORFs are prevalent translational repressors in vertebrates.

True

giraldezlab

May 6, 2016, 9:36 a.m.

Oct. 22, 2018, 8:52 p.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006204BS DCD000142SR whole organism Giraldez Lab, Yale AB/TU 5-9 somites 12
Applied Assay ID Biosample Replicate Assay
DCD000853AA DCD012300BR RNA-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000726SQ DCD000877TR Giraldez Lab, Yale Illumina HiSeq 2500 08/21/2013
DCD000438DT: FASTQ
DCD001987DT: LOG GRCz10/danRer10
DCD001988DT: TSV GRCz10/danRer10
DCD001989DT: BEDGRAPH GRCz10/danRer10
DCD001990DT: BEDGRAPH GRCz10/danRer10
DCD001993DT: BEDGRAPH GRCz10/danRer10
DCD001994DT: PDF GRCz10/danRer10
DCD001995DT: BEDGRAPH GRCz10/danRer10
DCD001996DT: LOG GRCz10/danRer10
DCD001997DT: PDF GRCz10/danRer10
DCD001998DT: LOG GRCz10/danRer10
DCD002003DT: BEDGRAPH GRCz10/danRer10
DCD002024DT: BAM GRCz10/danRer10
DCD008622DT: BIGWIG GRCz10/danRer10
DCD008624DT: BIGWIG GRCz10/danRer10
DCD014644DT: LOG GRCz11/danRer11
DCD014645DT: TSV GRCz11/danRer11
DCD014646DT: TSV GRCz11/danRer11
DCD014647DT: BEDGRAPH GRCz11/danRer11
DCD014648DT: BEDGRAPH GRCz11/danRer11
DCD014649DT: BEDGRAPH GRCz11/danRer11
DCD014650DT: BIGWIG GRCz11/danRer11
DCD014651DT: BIGWIG GRCz11/danRer11
DCD014652DT: BEDGRAPH GRCz11/danRer11
DCD014653DT: LOG GRCz11/danRer11
DCD014654DT: PDF GRCz11/danRer11
DCD014655DT: PDF GRCz11/danRer11
DCD014656DT: LOG GRCz11/danRer11
DCD014661DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006253BS DCD000142SR whole organism Giraldez Lab, Yale AB/TU 30%-epiboly 5
Applied Assay ID Biosample Replicate Assay
DCD000902AA DCD012349BR RNA-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000666SQ DCD000926TR Giraldez Lab, Yale Illumina HiSeq 2000 02/20/2014
DCD000437DT: FASTQ
DCD003620DT: LOG GRCz10/danRer10
DCD003621DT: TSV GRCz10/danRer10
DCD003622DT: BEDGRAPH GRCz10/danRer10
DCD003624DT: BEDGRAPH GRCz10/danRer10
DCD003626DT: BEDGRAPH GRCz10/danRer10
DCD003627DT: PDF GRCz10/danRer10
DCD003628DT: LOG GRCz10/danRer10
DCD003629DT: PDF GRCz10/danRer10
DCD003630DT: LOG GRCz10/danRer10
DCD003631DT: BEDGRAPH GRCz10/danRer10
DCD003635DT: BEDGRAPH GRCz10/danRer10
DCD003683DT: BAM GRCz10/danRer10
DCD008532DT: BIGWIG GRCz10/danRer10
DCD008533DT: BIGWIG GRCz10/danRer10
DCD014336DT: LOG GRCz11/danRer11
DCD014337DT: TSV GRCz11/danRer11
DCD014338DT: TSV GRCz11/danRer11
DCD014339DT: BEDGRAPH GRCz11/danRer11
DCD014340DT: BIGWIG GRCz11/danRer11
DCD014341DT: BEDGRAPH GRCz11/danRer11
DCD014342DT: PDF GRCz11/danRer11
DCD014343DT: LOG GRCz11/danRer11
DCD014344DT: BIGWIG GRCz11/danRer11
DCD014345DT: BEDGRAPH GRCz11/danRer11
DCD014346DT: BEDGRAPH GRCz11/danRer11
DCD014347DT: LOG GRCz11/danRer11
DCD014348DT: PDF GRCz11/danRer11
DCD014354DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006257BS DCD000142SR whole organism Giraldez Lab, Yale AB/TU Long-pec 48
Applied Assay ID Biosample Replicate Assay
DCD000906AA DCD012353BR RNA-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000781SQ DCD000930TR Giraldez Lab, Yale Illumina HiSeq 2000 02/20/2014
DCD000435DT: FASTQ
DCD004040DT: LOG GRCz10/danRer10
DCD004041DT: TSV GRCz10/danRer10
DCD004042DT: BEDGRAPH GRCz10/danRer10
DCD004044DT: BEDGRAPH GRCz10/danRer10
DCD004045DT: BEDGRAPH GRCz10/danRer10
DCD004047DT: PDF GRCz10/danRer10
DCD004048DT: LOG GRCz10/danRer10
DCD004049DT: PDF GRCz10/danRer10
DCD004050DT: LOG GRCz10/danRer10
DCD004051DT: BEDGRAPH GRCz10/danRer10
DCD004055DT: BEDGRAPH GRCz10/danRer10
DCD004073DT: BAM GRCz10/danRer10
DCD008494DT: BIGWIG GRCz10/danRer10
DCD008496DT: BIGWIG GRCz10/danRer10
DCD014966DT: LOG GRCz11/danRer11
DCD014967DT: TSV GRCz11/danRer11
DCD014968DT: TSV GRCz11/danRer11
DCD014969DT: BEDGRAPH GRCz11/danRer11
DCD014970DT: BIGWIG GRCz11/danRer11
DCD014971DT: BEDGRAPH GRCz11/danRer11
DCD014972DT: BEDGRAPH GRCz11/danRer11
DCD014973DT: BEDGRAPH GRCz11/danRer11
DCD014974DT: BIGWIG GRCz11/danRer11
DCD014975DT: PDF GRCz11/danRer11
DCD014976DT: LOG GRCz11/danRer11
DCD014977DT: LOG GRCz11/danRer11
DCD014979DT: PDF GRCz11/danRer11
DCD014983DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006262BS DCD000142SR whole organism Giraldez Lab, Yale AB/TU Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD000911AA DCD012358BR RNA-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD000679SQ DCD000935TR Giraldez Lab, Yale Illumina HiSeq 2000 02/20/2014
DCD000436DT: FASTQ
DCD004088DT: LOG GRCz10/danRer10
DCD004090DT: TSV GRCz10/danRer10
DCD004091DT: BEDGRAPH GRCz10/danRer10
DCD004093DT: BEDGRAPH GRCz10/danRer10
DCD004094DT: BEDGRAPH GRCz10/danRer10
DCD004095DT: BEDGRAPH GRCz10/danRer10
DCD004096DT: PDF GRCz10/danRer10
DCD004097DT: LOG GRCz10/danRer10
DCD004098DT: PDF GRCz10/danRer10
DCD004099DT: LOG GRCz10/danRer10
DCD004103DT: BEDGRAPH GRCz10/danRer10
DCD004127DT: BAM GRCz10/danRer10
DCD008502DT: BIGWIG GRCz10/danRer10
DCD008503DT: BIGWIG GRCz10/danRer10
DCD014403DT: LOG GRCz11/danRer11
DCD014407DT: TSV GRCz11/danRer11
DCD014408DT: TSV GRCz11/danRer11
DCD014409DT: BEDGRAPH GRCz11/danRer11
DCD014410DT: BEDGRAPH GRCz11/danRer11
DCD014411DT: PDF GRCz11/danRer11
DCD014412DT: BIGWIG GRCz11/danRer11
DCD014413DT: LOG GRCz11/danRer11
DCD014414DT: PDF GRCz11/danRer11
DCD014415DT: BIGWIG GRCz11/danRer11
DCD014416DT: LOG GRCz11/danRer11
DCD014419DT: BEDGRAPH GRCz11/danRer11
DCD014420DT: BEDGRAPH GRCz11/danRer11
DCD014421DT: BAM GRCz11/danRer11