Series Summary for DCD000229SR

Comprehensive maps of DNA methylation in mature gametes and at various embryonic stages of cleavage phase zebrafish development.

Survey

10.1016/j.cell.2013.04.030

SRP020008

Early vertebrate embryos must achieve totipotency and prepare for zygotic genome activation (ZGA). To understand this process; we determined the DNA methylation (DNAme) profiles of zebrafish gametes; embryos at different stages; and somatic muscle and compared them to gene activity and histone modifications. Sperm chromatin patterns are virtually identical to those at ZGA. Unexpectedly; the DNA of many oocyte genes important for germ-line functions (i.e.;_piwil1) or early development (i.e.;_hox_genes) is methylated; but the loci are demethylated during zygotic cleavage stages to precisely the state observed in sperm; even in parthenogenetic embryos lacking a replicating paternal genome. Furthermore; this cohort constitutes the genes and loci that acquire DNAme during development (i.e.; ZGA to muscle). Finally; DNA methyltransferase inhibition experiments suggest that DNAme silences particular gene and chromatin cohorts at ZGA; preventing their precocious expression. Thus; zebrafish achieve a totipotent chromatin state at ZGA through paternal genome competency and maternal genome DNAme reprogramming.

True

patrick.murphy

June 16, 2016, 3:40 p.m.

Feb. 12, 2019, 12:59 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background
DCD006635BS DCD000229SR whole organism Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD001393AA DCD012889BR BS-seq_Cairns_Lab_DNA Methylation_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001190SQ DCD001415TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000844DT: FASTQ
DCD007316DT: LOG GRCz10/danRer10
DCD007318DT: LOG GRCz10/danRer10
DCD007319DT: LOG GRCz10/danRer10
DCD007320DT: LOG GRCz10/danRer10
DCD007322DT: LOG GRCz10/danRer10
DCD007323DT: BEDGRAPH GRCz10/danRer10
DCD007324DT: BIGWIG GRCz10/danRer10
DCD007325DT: LOG GRCz10/danRer10
DCD007328DT: BAM GRCz10/danRer10
DCD007330DT: BED GRCz10/danRer10
DCD007332DT: BIGBED GRCz10/danRer10
DCD007336DT: BED GRCz10/danRer10
DCD007338DT: BIGBED GRCz10/danRer10
DCD007342DT: BED GRCz10/danRer10
DCD007351DT: BIGBED GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001194SQ DCD001415TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000845DT: FASTQ
DCD007331DT: LOG GRCz10/danRer10
DCD007333DT: LOG GRCz10/danRer10
DCD007334DT: LOG GRCz10/danRer10
DCD007335DT: LOG GRCz10/danRer10
DCD007337DT: LOG GRCz10/danRer10
DCD007339DT: BEDGRAPH GRCz10/danRer10
DCD007340DT: BIGWIG GRCz10/danRer10
DCD007341DT: BED GRCz10/danRer10
DCD007343DT: BIGBED GRCz10/danRer10
DCD007344DT: BED GRCz10/danRer10
DCD007345DT: LOG GRCz10/danRer10
DCD007347DT: BIGBED GRCz10/danRer10
DCD007353DT: BED GRCz10/danRer10
DCD007360DT: BIGBED GRCz10/danRer10
DCD007362DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001203SQ DCD001415TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000843DT: FASTQ
DCD007306DT: LOG GRCz10/danRer10
DCD007307DT: LOG GRCz10/danRer10
DCD007308DT: LOG GRCz10/danRer10
DCD007309DT: LOG GRCz10/danRer10
DCD007310DT: LOG GRCz10/danRer10
DCD007311DT: BIGWIG GRCz10/danRer10
DCD007312DT: BEDGRAPH GRCz10/danRer10
DCD007313DT: BIGBED GRCz10/danRer10
DCD007314DT: BED GRCz10/danRer10
DCD007315DT: BED GRCz10/danRer10
DCD007317DT: LOG GRCz10/danRer10
DCD007321DT: BIGBED GRCz10/danRer10
DCD007326DT: BED GRCz10/danRer10
DCD007327DT: BIGBED GRCz10/danRer10
DCD007329DT: BAM GRCz10/danRer10
DCD018632DT: BEDGRAPH GRCz10/danRer10
DCD018634DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006636BS DCD000229SR whole organism Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD001394AA DCD012892BR BS-seq_Cairns_Lab_DNA Methylation_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001207SQ DCD001419TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000853DT: FASTQ
DCD007391DT: LOG GRCz10/danRer10
DCD007393DT: LOG GRCz10/danRer10
DCD007394DT: LOG GRCz10/danRer10
DCD007395DT: LOG GRCz10/danRer10
DCD007397DT: LOG GRCz10/danRer10
DCD007398DT: BEDGRAPH GRCz10/danRer10
DCD007400DT: LOG GRCz10/danRer10
DCD007401DT: BIGBED GRCz10/danRer10
DCD007402DT: BED GRCz10/danRer10
DCD007403DT: BIGWIG GRCz10/danRer10
DCD007404DT: BED GRCz10/danRer10
DCD007407DT: BIGBED GRCz10/danRer10
DCD007411DT: BED GRCz10/danRer10
DCD007416DT: BIGBED GRCz10/danRer10
DCD007443DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001208SQ DCD001419TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000852DT: FASTQ
DCD007376DT: LOG GRCz10/danRer10
DCD007378DT: LOG GRCz10/danRer10
DCD007379DT: LOG GRCz10/danRer10
DCD007380DT: LOG GRCz10/danRer10
DCD007382DT: LOG GRCz10/danRer10
DCD007383DT: BEDGRAPH GRCz10/danRer10
DCD007385DT: LOG GRCz10/danRer10
DCD007386DT: BIGWIG GRCz10/danRer10
DCD007387DT: BED GRCz10/danRer10
DCD007388DT: BIGBED GRCz10/danRer10
DCD007389DT: BED GRCz10/danRer10
DCD007396DT: BIGBED GRCz10/danRer10
DCD007399DT: BED GRCz10/danRer10
DCD007405DT: BIGBED GRCz10/danRer10
DCD007435DT: BAM GRCz10/danRer10
DCD018633DT: BEDGRAPH GRCz10/danRer10
DCD018635DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006637BS DCD000229SR whole organism Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD001395AA DCD012891BR BS-seq_Cairns_Lab_DNA Methylation_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001189SQ DCD001420TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000850DT: FASTQ
DCD007346DT: LOG GRCz10/danRer10
DCD007348DT: LOG GRCz10/danRer10
DCD007349DT: LOG GRCz10/danRer10
DCD007350DT: LOG GRCz10/danRer10
DCD007352DT: LOG GRCz10/danRer10
DCD007354DT: BEDGRAPH GRCz10/danRer10
DCD007355DT: LOG GRCz10/danRer10
DCD007356DT: BED GRCz10/danRer10
DCD007357DT: BIGBED GRCz10/danRer10
DCD007358DT: BIGWIG GRCz10/danRer10
DCD007359DT: BED GRCz10/danRer10
DCD007365DT: BIGBED GRCz10/danRer10
DCD007369DT: BED GRCz10/danRer10
DCD007375DT: BIGBED GRCz10/danRer10
DCD007392DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001197SQ DCD001420TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000847DT: FASTQ
DCD007256DT: LOG GRCz10/danRer10
DCD007258DT: LOG GRCz10/danRer10
DCD007259DT: LOG GRCz10/danRer10
DCD007260DT: LOG GRCz10/danRer10
DCD007262DT: LOG GRCz10/danRer10
DCD007263DT: BEDGRAPH GRCz10/danRer10
DCD007265DT: LOG GRCz10/danRer10
DCD007266DT: BIGWIG GRCz10/danRer10
DCD007267DT: BED GRCz10/danRer10
DCD007268DT: BED GRCz10/danRer10
DCD007269DT: BIGBED GRCz10/danRer10
DCD007276DT: BIGBED GRCz10/danRer10
DCD007278DT: BAM GRCz10/danRer10
DCD007279DT: BED GRCz10/danRer10
DCD007287DT: BIGBED GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001198SQ DCD001420TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000846DT: FASTQ
DCD007246DT: LOG GRCz10/danRer10
DCD007247DT: LOG GRCz10/danRer10
DCD007248DT: LOG GRCz10/danRer10
DCD007249DT: LOG GRCz10/danRer10
DCD007250DT: LOG GRCz10/danRer10
DCD007251DT: BIGBED GRCz10/danRer10
DCD007252DT: BED GRCz10/danRer10
DCD007253DT: BED GRCz10/danRer10
DCD007254DT: BIGWIG GRCz10/danRer10
DCD007255DT: BEDGRAPH GRCz10/danRer10
DCD007257DT: LOG GRCz10/danRer10
DCD007261DT: BIGBED GRCz10/danRer10
DCD007264DT: BED GRCz10/danRer10
DCD007270DT: BAM GRCz10/danRer10
DCD007272DT: BIGBED GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001199SQ DCD001420TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000849DT: FASTQ
DCD007286DT: LOG GRCz10/danRer10
DCD007288DT: LOG GRCz10/danRer10
DCD007289DT: LOG GRCz10/danRer10
DCD007290DT: LOG GRCz10/danRer10
DCD007292DT: LOG GRCz10/danRer10
DCD007294DT: BEDGRAPH GRCz10/danRer10
DCD007295DT: LOG GRCz10/danRer10
DCD007297DT: BIGWIG GRCz10/danRer10
DCD007298DT: BED GRCz10/danRer10
DCD007299DT: BED GRCz10/danRer10
DCD007300DT: BIGBED GRCz10/danRer10
DCD007301DT: BAM GRCz10/danRer10
DCD007302DT: BIGBED GRCz10/danRer10
DCD007304DT: BED GRCz10/danRer10
DCD007305DT: BIGBED GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001200SQ DCD001420TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000848DT: FASTQ
DCD007271DT: LOG GRCz10/danRer10
DCD007273DT: LOG GRCz10/danRer10
DCD007274DT: LOG GRCz10/danRer10
DCD007275DT: LOG GRCz10/danRer10
DCD007277DT: LOG GRCz10/danRer10
DCD007280DT: BEDGRAPH GRCz10/danRer10
DCD007281DT: BIGWIG GRCz10/danRer10
DCD007282DT: LOG GRCz10/danRer10
DCD007283DT: BED GRCz10/danRer10
DCD007284DT: BIGBED GRCz10/danRer10
DCD007285DT: BED GRCz10/danRer10
DCD007291DT: BIGBED GRCz10/danRer10
DCD007293DT: BAM GRCz10/danRer10
DCD007296DT: BED GRCz10/danRer10
DCD007303DT: BIGBED GRCz10/danRer10
DCD018630DT: BEDGRAPH GRCz10/danRer10
DCD018636DT: BIGWIG GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001206SQ DCD001420TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000851DT: FASTQ
DCD007361DT: LOG GRCz10/danRer10
DCD007363DT: LOG GRCz10/danRer10
DCD007364DT: LOG GRCz10/danRer10
DCD007366DT: LOG GRCz10/danRer10
DCD007367DT: LOG GRCz10/danRer10
DCD007368DT: BEDGRAPH GRCz10/danRer10
DCD007370DT: LOG GRCz10/danRer10
DCD007371DT: BIGWIG GRCz10/danRer10
DCD007372DT: BED GRCz10/danRer10
DCD007373DT: BED GRCz10/danRer10
DCD007374DT: BIGBED GRCz10/danRer10
DCD007377DT: BAM GRCz10/danRer10
DCD007381DT: BIGBED GRCz10/danRer10
DCD007384DT: BED GRCz10/danRer10
DCD007390DT: BIGBED GRCz10/danRer10
DCD018626DT: BEDGRAPH GRCz10/danRer10
DCD018629DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006638BS DCD000229SR tissue Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD001396AA DCD012890BR BS-seq_Cairns_Lab_DNA Methylation_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001193SQ DCD001418TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000860DT: FASTQ
DCD007496DT: LOG GRCz10/danRer10
DCD007498DT: LOG GRCz10/danRer10
DCD007499DT: LOG GRCz10/danRer10
DCD007500DT: LOG GRCz10/danRer10
DCD007502DT: LOG GRCz10/danRer10
DCD007503DT: LOG GRCz10/danRer10
DCD007504DT: BEDGRAPH GRCz10/danRer10
DCD007505DT: BIGWIG GRCz10/danRer10
DCD007506DT: BED GRCz10/danRer10
DCD007508DT: BIGBED GRCz10/danRer10
DCD007509DT: BED GRCz10/danRer10
DCD007512DT: BIGBED GRCz10/danRer10
DCD007516DT: BED GRCz10/danRer10
DCD007524DT: BIGBED GRCz10/danRer10
DCD007525DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001195SQ DCD001418TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000859DT: FASTQ
DCD007481DT: LOG GRCz10/danRer10
DCD007483DT: LOG GRCz10/danRer10
DCD007484DT: LOG GRCz10/danRer10
DCD007485DT: LOG GRCz10/danRer10
DCD007487DT: LOG GRCz10/danRer10
DCD007488DT: BEDGRAPH GRCz10/danRer10
DCD007490DT: BIGWIG GRCz10/danRer10
DCD007491DT: BED GRCz10/danRer10
DCD007492DT: LOG GRCz10/danRer10
DCD007493DT: BIGBED GRCz10/danRer10
DCD007494DT: BED GRCz10/danRer10
DCD007497DT: BIGBED GRCz10/danRer10
DCD007501DT: BED GRCz10/danRer10
DCD007507DT: BIGBED GRCz10/danRer10
DCD007531DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001196SQ DCD001418TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000858DT: FASTQ
DCD007466DT: LOG GRCz10/danRer10
DCD007468DT: LOG GRCz10/danRer10
DCD007469DT: LOG GRCz10/danRer10
DCD007470DT: LOG GRCz10/danRer10
DCD007472DT: LOG GRCz10/danRer10
DCD007473DT: BEDGRAPH GRCz10/danRer10
DCD007475DT: BIGWIG GRCz10/danRer10
DCD007476DT: LOG GRCz10/danRer10
DCD007477DT: BED GRCz10/danRer10
DCD007478DT: BED GRCz10/danRer10
DCD007479DT: BIGBED GRCz10/danRer10
DCD007482DT: BIGBED GRCz10/danRer10
DCD007489DT: BED GRCz10/danRer10
DCD007495DT: BIGBED GRCz10/danRer10
DCD007510DT: BAM GRCz10/danRer10
DCD018620DT: BEDGRAPH GRCz10/danRer10
DCD018623DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006639BS DCD000229SR whole organism Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD001397AA DCD012893BR BS-seq_Cairns_Lab_DNA Methylation_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001201SQ DCD001417TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000857DT: FASTQ
DCD007451DT: LOG GRCz10/danRer10
DCD007453DT: LOG GRCz10/danRer10
DCD007454DT: LOG GRCz10/danRer10
DCD007455DT: LOG GRCz10/danRer10
DCD007457DT: LOG GRCz10/danRer10
DCD007458DT: BEDGRAPH GRCz10/danRer10
DCD007459DT: LOG GRCz10/danRer10
DCD007460DT: BIGWIG GRCz10/danRer10
DCD007462DT: BED GRCz10/danRer10
DCD007463DT: BED GRCz10/danRer10
DCD007464DT: BIGBED GRCz10/danRer10
DCD007467DT: BIGBED GRCz10/danRer10
DCD007474DT: BED GRCz10/danRer10
DCD007480DT: BIGBED GRCz10/danRer10
DCD007486DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001202SQ DCD001417TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000856DT: FASTQ
DCD007436DT: LOG GRCz10/danRer10
DCD007438DT: LOG GRCz10/danRer10
DCD007439DT: LOG GRCz10/danRer10
DCD007440DT: LOG GRCz10/danRer10
DCD007442DT: LOG GRCz10/danRer10
DCD007444DT: BEDGRAPH GRCz10/danRer10
DCD007445DT: BIGWIG GRCz10/danRer10
DCD007447DT: BED GRCz10/danRer10
DCD007448DT: BIGBED GRCz10/danRer10
DCD007449DT: BED GRCz10/danRer10
DCD007450DT: LOG GRCz10/danRer10
DCD007452DT: BIGBED GRCz10/danRer10
DCD007456DT: BED GRCz10/danRer10
DCD007465DT: BIGBED GRCz10/danRer10
DCD007471DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001204SQ DCD001417TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000855DT: FASTQ
DCD007421DT: LOG GRCz10/danRer10
DCD007423DT: LOG GRCz10/danRer10
DCD007424DT: LOG GRCz10/danRer10
DCD007425DT: LOG GRCz10/danRer10
DCD007427DT: LOG GRCz10/danRer10
DCD007428DT: LOG GRCz10/danRer10
DCD007429DT: BEDGRAPH GRCz10/danRer10
DCD007430DT: BIGWIG GRCz10/danRer10
DCD007431DT: BED GRCz10/danRer10
DCD007432DT: BIGBED GRCz10/danRer10
DCD007433DT: BED GRCz10/danRer10
DCD007434DT: BIGBED GRCz10/danRer10
DCD007437DT: BED GRCz10/danRer10
DCD007441DT: BIGBED GRCz10/danRer10
DCD007461DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001205SQ DCD001417TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000854DT: FASTQ
DCD007406DT: LOG GRCz10/danRer10
DCD007408DT: LOG GRCz10/danRer10
DCD007409DT: LOG GRCz10/danRer10
DCD007410DT: LOG GRCz10/danRer10
DCD007412DT: LOG GRCz10/danRer10
DCD007413DT: LOG GRCz10/danRer10
DCD007414DT: BEDGRAPH GRCz10/danRer10
DCD007415DT: BIGWIG GRCz10/danRer10
DCD007417DT: BED GRCz10/danRer10
DCD007418DT: BED GRCz10/danRer10
DCD007419DT: BIGBED GRCz10/danRer10
DCD007420DT: BIGBED GRCz10/danRer10
DCD007422DT: BED GRCz10/danRer10
DCD007426DT: BIGBED GRCz10/danRer10
DCD007446DT: BAM GRCz10/danRer10
DCD018625DT: BEDGRAPH GRCz10/danRer10
DCD018627DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006640BS DCD000229SR tissue Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD001398AA DCD012894BR BS-seq_Cairns_Lab_DNA Methylation_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001191SQ DCD001416TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000861DT: FASTQ
DCD007511DT: LOG GRCz10/danRer10
DCD007513DT: LOG GRCz10/danRer10
DCD007514DT: LOG GRCz10/danRer10
DCD007515DT: LOG GRCz10/danRer10
DCD007517DT: LOG GRCz10/danRer10
DCD007518DT: BEDGRAPH GRCz10/danRer10
DCD007519DT: BIGWIG GRCz10/danRer10
DCD007520DT: LOG GRCz10/danRer10
DCD007521DT: BIGBED GRCz10/danRer10
DCD007522DT: BED GRCz10/danRer10
DCD007523DT: BED GRCz10/danRer10
DCD007527DT: BIGBED GRCz10/danRer10
DCD007535DT: BED GRCz10/danRer10
DCD007540DT: BIGBED GRCz10/danRer10
DCD007544DT: BAM GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD001192SQ DCD001416TR Cairns Lab, HHMI Illumina HiSeq 2000 01/01/2000
DCD000862DT: FASTQ
DCD007526DT: LOG GRCz10/danRer10
DCD007528DT: LOG GRCz10/danRer10
DCD007529DT: LOG GRCz10/danRer10
DCD007530DT: LOG GRCz10/danRer10
DCD007532DT: LOG GRCz10/danRer10
DCD007533DT: BEDGRAPH GRCz10/danRer10
DCD007534DT: BIGWIG GRCz10/danRer10
DCD007536DT: BED GRCz10/danRer10
DCD007537DT: LOG GRCz10/danRer10
DCD007538DT: BED GRCz10/danRer10
DCD007539DT: BIGBED GRCz10/danRer10
DCD007541DT: BIGBED GRCz10/danRer10
DCD007542DT: BED GRCz10/danRer10
DCD007543DT: BIGBED GRCz10/danRer10
DCD007545DT: BAM GRCz10/danRer10
DCD018624DT: BEDGRAPH GRCz10/danRer10
DCD018628DT: BIGWIG GRCz10/danRer10
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007393BS DCD000229SR tissue Cairns Lab, HHMI TU
Applied Assay ID Biosample Replicate Assay
DCD002965AA DCD014383BR BS-seq_Cairns_Lab_DNA Methylation_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003303SQ DCD003459TR Cairns Lab, HHMI Illumina HiSeq 2000 07/22/2015
DCD017676DT: FASTQ
DCD018631DT: BEDGRAPH GRCz10/danRer10
DCD018642DT: BIGWIG GRCz10/danRer10
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD003296SQ DCD003457TR Cairns Lab, HHMI Illumina HiSeq 2000 07/22/2015
DCD017677DT: FASTQ