file type: TSV

Mapped genome: GRCz11/danRer11

Command: DANIO-CODE_RNA-Seq_ver_1.2|STAR_2.6.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --outFilterMismatchNmax 33 --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --quantMode GeneCounts --seedSearchStartLmax 12 --outSAMtype BAM SortedByCoordinate --runThreadN 16 --limitBAMsortRAM 300000000000 --limitOutSJcollapsed 2000000 --readFilesIn RNA-seq_Schier_Lab_0010AS.DCD001128SQ.USERagiess.R1.fastq RNA-seq_Schier_Lab_0010AS.DCD001128SQ.USERagiess.R2.fastq --genomeLoad NoSharedMemory --outFilterType BySJout --outWigType bedGraph --outWigStrand Stranded

Version: freeze-03

Added by User: ak.mukarram

Date Added: Oct. 22, 2018, 3:21 p.m.

Last Edited: Nov. 22, 2018, 2:01 a.m.