Series Summary for DCD000225SR

Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis

Survey

10.1101/gr.133009.111

GSE32900

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

True

agiess

June 9, 2016, 7:52 a.m.

Nov. 9, 2018, 2:46 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006607BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Day 5 120
Applied Assay ID Biosample Replicate Assay
DCD001338AA DCD012757BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001118SQ DCD001344TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000769DT: FASTQ
DCD003116DT: LOG GRCz10/danRer10
DCD003117DT: TSV GRCz10/danRer10
DCD003118DT: BEDGRAPH GRCz10/danRer10
DCD003120DT: BEDGRAPH GRCz10/danRer10
DCD003122DT: BEDGRAPH GRCz10/danRer10
DCD003123DT: BEDGRAPH GRCz10/danRer10
DCD003124DT: PDF GRCz10/danRer10
DCD003125DT: LOG GRCz10/danRer10
DCD003126DT: LOG GRCz10/danRer10
DCD003127DT: PDF GRCz10/danRer10
DCD003131DT: BEDGRAPH GRCz10/danRer10
DCD003181DT: BAM GRCz10/danRer10
DCD008523DT: BIGWIG GRCz10/danRer10
DCD008525DT: BIGWIG GRCz10/danRer10
DCD013815DT: LOG GRCz11/danRer11
DCD013816DT: TSV GRCz11/danRer11
DCD013820DT: TSV GRCz11/danRer11
DCD013821DT: BEDGRAPH GRCz11/danRer11
DCD013822DT: BIGWIG GRCz11/danRer11
DCD013823DT: BEDGRAPH GRCz11/danRer11
DCD013824DT: BIGWIG GRCz11/danRer11
DCD013825DT: BEDGRAPH GRCz11/danRer11
DCD013826DT: BEDGRAPH GRCz11/danRer11
DCD013827DT: LOG GRCz11/danRer11
DCD013828DT: LOG GRCz11/danRer11
DCD013829DT: PDF GRCz11/danRer11
DCD013830DT: PDF GRCz11/danRer11
DCD013835DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001125SQ DCD001341TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000768DT: FASTQ
DCD002192DT: LOG GRCz10/danRer10
DCD002193DT: TSV GRCz10/danRer10
DCD002194DT: BEDGRAPH GRCz10/danRer10
DCD002196DT: BEDGRAPH GRCz10/danRer10
DCD002197DT: BEDGRAPH GRCz10/danRer10
DCD002200DT: BAM GRCz10/danRer10
DCD003087DT: PDF GRCz10/danRer10
DCD003088DT: LOG GRCz10/danRer10
DCD003089DT: PDF GRCz10/danRer10
DCD003090DT: BEDGRAPH GRCz10/danRer10
DCD003091DT: LOG GRCz10/danRer10
DCD003094DT: BEDGRAPH GRCz10/danRer10
DCD008514DT: BIGWIG GRCz10/danRer10
DCD008515DT: BIGWIG GRCz10/danRer10
DCD013831DT: LOG GRCz11/danRer11
DCD013832DT: TSV GRCz11/danRer11
DCD013833DT: TSV GRCz11/danRer11
DCD013834DT: BEDGRAPH GRCz11/danRer11
DCD013836DT: BIGWIG GRCz11/danRer11
DCD013837DT: BIGWIG GRCz11/danRer11
DCD013838DT: BEDGRAPH GRCz11/danRer11
DCD013839DT: PDF GRCz11/danRer11
DCD013840DT: LOG GRCz11/danRer11
DCD013841DT: LOG GRCz11/danRer11
DCD013842DT: PDF GRCz11/danRer11
DCD013843DT: BEDGRAPH GRCz11/danRer11
DCD013844DT: BEDGRAPH GRCz11/danRer11
DCD013897DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006608BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Shield 6
Applied Assay ID Biosample Replicate Assay
DCD001339AA DCD012753BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001114SQ DCD001355TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000772DT: FASTQ
DCD003752DT: LOG GRCz10/danRer10
DCD003753DT: TSV GRCz10/danRer10
DCD003754DT: BEDGRAPH GRCz10/danRer10
DCD003756DT: BEDGRAPH GRCz10/danRer10
DCD003757DT: BEDGRAPH GRCz10/danRer10
DCD003759DT: PDF GRCz10/danRer10
DCD003760DT: LOG GRCz10/danRer10
DCD003761DT: BEDGRAPH GRCz10/danRer10
DCD003762DT: LOG GRCz10/danRer10
DCD003763DT: PDF GRCz10/danRer10
DCD003766DT: BEDGRAPH GRCz10/danRer10
DCD003818DT: BAM GRCz10/danRer10
DCD008510DT: BIGWIG GRCz10/danRer10
DCD008511DT: BIGWIG GRCz10/danRer10
DCD013845DT: LOG GRCz11/danRer11
DCD013846DT: TSV GRCz11/danRer11
DCD013847DT: TSV GRCz11/danRer11
DCD013848DT: BEDGRAPH GRCz11/danRer11
DCD013849DT: BEDGRAPH GRCz11/danRer11
DCD013850DT: BIGWIG GRCz11/danRer11
DCD013851DT: BEDGRAPH GRCz11/danRer11
DCD013852DT: PDF GRCz11/danRer11
DCD013853DT: LOG GRCz11/danRer11
DCD013854DT: BIGWIG GRCz11/danRer11
DCD013855DT: LOG GRCz11/danRer11
DCD013856DT: PDF GRCz11/danRer11
DCD013857DT: BEDGRAPH GRCz11/danRer11
DCD013880DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001119SQ DCD001354TR Schier Lab, Harvard University Illumina GAIIx forward 76 11/17/2011
DCD000774DT: FASTQ
DCD004100DT: LOG GRCz10/danRer10
DCD004101DT: TSV GRCz10/danRer10
DCD004102DT: BEDGRAPH GRCz10/danRer10
DCD004104DT: BEDGRAPH GRCz10/danRer10
DCD004105DT: BEDGRAPH GRCz10/danRer10
DCD004106DT: BEDGRAPH GRCz10/danRer10
DCD004107DT: PDF GRCz10/danRer10
DCD004108DT: LOG GRCz10/danRer10
DCD004109DT: PDF GRCz10/danRer10
DCD004110DT: LOG GRCz10/danRer10
DCD004111DT: BEDGRAPH GRCz10/danRer10
DCD004143DT: BAM GRCz10/danRer10
DCD008522DT: BIGWIG GRCz10/danRer10
DCD008524DT: BIGWIG GRCz10/danRer10
DCD013858DT: LOG GRCz11/danRer11
DCD013859DT: TSV GRCz11/danRer11
DCD013860DT: TSV GRCz11/danRer11
DCD013861DT: BEDGRAPH GRCz11/danRer11
DCD013862DT: BEDGRAPH GRCz11/danRer11
DCD013863DT: BEDGRAPH GRCz11/danRer11
DCD013864DT: BIGWIG GRCz11/danRer11
DCD013865DT: PDF GRCz11/danRer11
DCD013866DT: BIGWIG GRCz11/danRer11
DCD013867DT: BEDGRAPH GRCz11/danRer11
DCD013868DT: LOG GRCz11/danRer11
DCD013869DT: LOG GRCz11/danRer11
DCD013870DT: PDF GRCz11/danRer11
DCD013876DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001128SQ DCD001353TR Schier Lab, Harvard University Illumina GAIIx forward 76 11/17/2011
DCD000773DT: FASTQ
DCD004028DT: LOG GRCz10/danRer10
DCD004029DT: TSV GRCz10/danRer10
DCD004030DT: BEDGRAPH GRCz10/danRer10
DCD004032DT: BEDGRAPH GRCz10/danRer10
DCD004033DT: BEDGRAPH GRCz10/danRer10
DCD004035DT: BEDGRAPH GRCz10/danRer10
DCD004036DT: PDF GRCz10/danRer10
DCD004037DT: LOG GRCz10/danRer10
DCD004038DT: PDF GRCz10/danRer10
DCD004039DT: LOG GRCz10/danRer10
DCD004043DT: BEDGRAPH GRCz10/danRer10
DCD004080DT: BAM GRCz10/danRer10
DCD008519DT: BIGWIG GRCz10/danRer10
DCD008520DT: BIGWIG GRCz10/danRer10
DCD013871DT: LOG GRCz11/danRer11
DCD013872DT: TSV GRCz11/danRer11
DCD013873DT: TSV GRCz11/danRer11
DCD013874DT: BEDGRAPH GRCz11/danRer11
DCD013875DT: BEDGRAPH GRCz11/danRer11
DCD013877DT: BIGWIG GRCz11/danRer11
DCD013878DT: BEDGRAPH GRCz11/danRer11
DCD013879DT: BEDGRAPH GRCz11/danRer11
DCD013881DT: LOG GRCz11/danRer11
DCD013882DT: PDF GRCz11/danRer11
DCD013883DT: PDF GRCz11/danRer11
DCD013884DT: BIGWIG GRCz11/danRer11
DCD013885DT: LOG GRCz11/danRer11
DCD013888DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006609BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Bud 10
Applied Assay ID Biosample Replicate Assay
DCD001340AA DCD012755BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001121SQ DCD001350TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000771DT: FASTQ
DCD001855DT: LOG GRCz10/danRer10
DCD001856DT: TSV GRCz10/danRer10
DCD001857DT: BEDGRAPH GRCz10/danRer10
DCD001859DT: BEDGRAPH GRCz10/danRer10
DCD001860DT: BEDGRAPH GRCz10/danRer10
DCD001861DT: BEDGRAPH GRCz10/danRer10
DCD001862DT: PDF GRCz10/danRer10
DCD001863DT: LOG GRCz10/danRer10
DCD001864DT: PDF GRCz10/danRer10
DCD001865DT: LOG GRCz10/danRer10
DCD001866DT: BEDGRAPH GRCz10/danRer10
DCD001906DT: BAM GRCz10/danRer10
DCD008602DT: BIGWIG GRCz10/danRer10
DCD008603DT: BIGWIG GRCz10/danRer10
DCD013886DT: LOG GRCz11/danRer11
DCD013887DT: TSV GRCz11/danRer11
DCD013889DT: TSV GRCz11/danRer11
DCD013890DT: BEDGRAPH GRCz11/danRer11
DCD013891DT: BEDGRAPH GRCz11/danRer11
DCD013892DT: BEDGRAPH GRCz11/danRer11
DCD013893DT: PDF GRCz11/danRer11
DCD013894DT: BEDGRAPH GRCz11/danRer11
DCD013895DT: BIGWIG GRCz11/danRer11
DCD013896DT: BIGWIG GRCz11/danRer11
DCD013898DT: LOG GRCz11/danRer11
DCD013899DT: LOG GRCz11/danRer11
DCD013900DT: PDF GRCz11/danRer11
DCD013923DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001127SQ DCD001349TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000770DT: FASTQ
DCD003260DT: LOG GRCz10/danRer10
DCD003261DT: TSV GRCz10/danRer10
DCD003262DT: BEDGRAPH GRCz10/danRer10
DCD003264DT: BEDGRAPH GRCz10/danRer10
DCD003265DT: BEDGRAPH GRCz10/danRer10
DCD003266DT: BEDGRAPH GRCz10/danRer10
DCD003267DT: PDF GRCz10/danRer10
DCD003268DT: LOG GRCz10/danRer10
DCD003269DT: PDF GRCz10/danRer10
DCD003270DT: LOG GRCz10/danRer10
DCD003271DT: BEDGRAPH GRCz10/danRer10
DCD003366DT: BAM GRCz10/danRer10
DCD008530DT: BIGWIG GRCz10/danRer10
DCD008531DT: BIGWIG GRCz10/danRer10
DCD013901DT: LOG GRCz11/danRer11
DCD013902DT: TSV GRCz11/danRer11
DCD013903DT: TSV GRCz11/danRer11
DCD013904DT: BEDGRAPH GRCz11/danRer11
DCD013905DT: BEDGRAPH GRCz11/danRer11
DCD013906DT: BEDGRAPH GRCz11/danRer11
DCD013907DT: BEDGRAPH GRCz11/danRer11
DCD013908DT: PDF GRCz11/danRer11
DCD013909DT: BIGWIG GRCz11/danRer11
DCD013910DT: BIGWIG GRCz11/danRer11
DCD013911DT: LOG GRCz11/danRer11
DCD013912DT: LOG GRCz11/danRer11
DCD013913DT: PDF GRCz11/danRer11
DCD013959DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006610BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL 1k-cell 3
Applied Assay ID Biosample Replicate Assay
DCD001341AA DCD012758BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001116SQ DCD001352TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000778DT: FASTQ
DCD001774DT: LOG GRCz10/danRer10
DCD001775DT: TSV GRCz10/danRer10
DCD001776DT: BEDGRAPH GRCz10/danRer10
DCD001777DT: BEDGRAPH GRCz10/danRer10
DCD001779DT: BEDGRAPH GRCz10/danRer10
DCD001780DT: BEDGRAPH GRCz10/danRer10
DCD001781DT: PDF GRCz10/danRer10
DCD001782DT: LOG GRCz10/danRer10
DCD001783DT: PDF GRCz10/danRer10
DCD001784DT: LOG GRCz10/danRer10
DCD001785DT: BEDGRAPH GRCz10/danRer10
DCD007838DT: BAM GRCz10/danRer10
DCD008604DT: BIGWIG GRCz10/danRer10
DCD008605DT: BIGWIG GRCz10/danRer10
DCD013914DT: LOG GRCz11/danRer11
DCD013915DT: TSV GRCz11/danRer11
DCD013916DT: TSV GRCz11/danRer11
DCD013917DT: BEDGRAPH GRCz11/danRer11
DCD013918DT: BEDGRAPH GRCz11/danRer11
DCD013919DT: BEDGRAPH GRCz11/danRer11
DCD013920DT: BIGWIG GRCz11/danRer11
DCD013921DT: BIGWIG GRCz11/danRer11
DCD013922DT: PDF GRCz11/danRer11
DCD013924DT: BEDGRAPH GRCz11/danRer11
DCD013925DT: LOG GRCz11/danRer11
DCD013927DT: LOG GRCz11/danRer11
DCD013928DT: PDF GRCz11/danRer11
DCD013961DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001122SQ DCD001351TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000777DT: FASTQ
DCD003164DT: LOG GRCz10/danRer10
DCD003165DT: TSV GRCz10/danRer10
DCD003167DT: BEDGRAPH GRCz10/danRer10
DCD003168DT: BEDGRAPH GRCz10/danRer10
DCD003169DT: BEDGRAPH GRCz10/danRer10
DCD003170DT: BEDGRAPH GRCz10/danRer10
DCD003171DT: PDF GRCz10/danRer10
DCD003172DT: LOG GRCz10/danRer10
DCD003173DT: BEDGRAPH GRCz10/danRer10
DCD003174DT: PDF GRCz10/danRer10
DCD003175DT: LOG GRCz10/danRer10
DCD003275DT: BAM GRCz10/danRer10
DCD008542DT: BIGWIG GRCz10/danRer10
DCD008543DT: BIGWIG GRCz10/danRer10
DCD013926DT: LOG GRCz11/danRer11
DCD013929DT: TSV GRCz11/danRer11
DCD013930DT: TSV GRCz11/danRer11
DCD013931DT: BEDGRAPH GRCz11/danRer11
DCD013932DT: BEDGRAPH GRCz11/danRer11
DCD013933DT: BIGWIG GRCz11/danRer11
DCD013934DT: BEDGRAPH GRCz11/danRer11
DCD013935DT: BEDGRAPH GRCz11/danRer11
DCD013936DT: BIGWIG GRCz11/danRer11
DCD013937DT: PDF GRCz11/danRer11
DCD013938DT: LOG GRCz11/danRer11
DCD013939DT: PDF GRCz11/danRer11
DCD013940DT: LOG GRCz11/danRer11
DCD013973DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006611BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Dome 4.33
Applied Assay ID Biosample Replicate Assay
DCD001342AA DCD012756BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001126SQ DCD001348TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000775DT: FASTQ
DCD004830DT: LOG GRCz10/danRer10
DCD004831DT: BEDGRAPH GRCz10/danRer10
DCD004832DT: TSV GRCz10/danRer10
DCD004833DT: BEDGRAPH GRCz10/danRer10
DCD004834DT: BEDGRAPH GRCz10/danRer10
DCD004835DT: PDF GRCz10/danRer10
DCD004836DT: BEDGRAPH GRCz10/danRer10
DCD004837DT: LOG GRCz10/danRer10
DCD004838DT: PDF GRCz10/danRer10
DCD004839DT: LOG GRCz10/danRer10
DCD004844DT: BEDGRAPH GRCz10/danRer10
DCD004892DT: BAM GRCz10/danRer10
DCD008564DT: BIGWIG GRCz10/danRer10
DCD008565DT: BIGWIG GRCz10/danRer10
DCD013954DT: LOG GRCz11/danRer11
DCD013955DT: TSV GRCz11/danRer11
DCD013956DT: TSV GRCz11/danRer11
DCD013957DT: BEDGRAPH GRCz11/danRer11
DCD013958DT: BEDGRAPH GRCz11/danRer11
DCD013960DT: BEDGRAPH GRCz11/danRer11
DCD013962DT: BIGWIG GRCz11/danRer11
DCD013963DT: BEDGRAPH GRCz11/danRer11
DCD013964DT: LOG GRCz11/danRer11
DCD013965DT: PDF GRCz11/danRer11
DCD013966DT: BIGWIG GRCz11/danRer11
DCD013967DT: LOG GRCz11/danRer11
DCD013968DT: PDF GRCz11/danRer11
DCD014008DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001120SQ DCD001347TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000776DT: FASTQ
DCD001599DT: LOG GRCz10/danRer10
DCD001601DT: TSV GRCz10/danRer10
DCD001602DT: BEDGRAPH GRCz10/danRer10
DCD001603DT: BEDGRAPH GRCz10/danRer10
DCD001604DT: BEDGRAPH GRCz10/danRer10
DCD001605DT: PDF GRCz10/danRer10
DCD001606DT: LOG GRCz10/danRer10
DCD001607DT: PDF GRCz10/danRer10
DCD001608DT: LOG GRCz10/danRer10
DCD001609DT: BEDGRAPH GRCz10/danRer10
DCD001613DT: BEDGRAPH GRCz10/danRer10
DCD001667DT: BAM GRCz10/danRer10
DCD008584DT: BIGWIG GRCz10/danRer10
DCD008585DT: BIGWIG GRCz10/danRer10
DCD013941DT: LOG GRCz11/danRer11
DCD013942DT: TSV GRCz11/danRer11
DCD013943DT: TSV GRCz11/danRer11
DCD013944DT: BEDGRAPH GRCz11/danRer11
DCD013945DT: BEDGRAPH GRCz11/danRer11
DCD013946DT: BEDGRAPH GRCz11/danRer11
DCD013947DT: BIGWIG GRCz11/danRer11
DCD013948DT: BEDGRAPH GRCz11/danRer11
DCD013949DT: BIGWIG GRCz11/danRer11
DCD013950DT: PDF GRCz11/danRer11
DCD013951DT: LOG GRCz11/danRer11
DCD013952DT: PDF GRCz11/danRer11
DCD013953DT: LOG GRCz11/danRer11
DCD013983DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006612BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD001343AA DCD012754BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001123SQ DCD001340TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000781DT: FASTQ
DCD004841DT: LOG GRCz10/danRer10
DCD004842DT: TSV GRCz10/danRer10
DCD004843DT: BEDGRAPH GRCz10/danRer10
DCD004845DT: PDF GRCz10/danRer10
DCD004846DT: LOG GRCz10/danRer10
DCD004847DT: PDF GRCz10/danRer10
DCD004848DT: LOG GRCz10/danRer10
DCD004849DT: BEDGRAPH GRCz10/danRer10
DCD004851DT: BEDGRAPH GRCz10/danRer10
DCD004854DT: BEDGRAPH GRCz10/danRer10
DCD004855DT: BEDGRAPH GRCz10/danRer10
DCD004893DT: BAM GRCz10/danRer10
DCD008554DT: BIGWIG GRCz10/danRer10
DCD008555DT: BIGWIG GRCz10/danRer10
DCD013969DT: LOG GRCz11/danRer11
DCD013970DT: TSV GRCz11/danRer11
DCD013971DT: TSV GRCz11/danRer11
DCD013972DT: BEDGRAPH GRCz11/danRer11
DCD013974DT: BEDGRAPH GRCz11/danRer11
DCD013975DT: BIGWIG GRCz11/danRer11
DCD013976DT: BEDGRAPH GRCz11/danRer11
DCD013977DT: BEDGRAPH GRCz11/danRer11
DCD013978DT: PDF GRCz11/danRer11
DCD013979DT: BIGWIG GRCz11/danRer11
DCD013980DT: PDF GRCz11/danRer11
DCD013981DT: LOG GRCz11/danRer11
DCD013982DT: LOG GRCz11/danRer11
DCD014092DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006613BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Prim-15 28
Applied Assay ID Biosample Replicate Assay
DCD001344AA DCD012759BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001129SQ DCD001346TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000779DT: FASTQ
DCD003308DT: LOG GRCz10/danRer10
DCD003309DT: TSV GRCz10/danRer10
DCD003310DT: BEDGRAPH GRCz10/danRer10
DCD003311DT: BEDGRAPH GRCz10/danRer10
DCD003313DT: BEDGRAPH GRCz10/danRer10
DCD003314DT: BEDGRAPH GRCz10/danRer10
DCD003315DT: PDF GRCz10/danRer10
DCD003316DT: LOG GRCz10/danRer10
DCD003317DT: PDF GRCz10/danRer10
DCD003318DT: LOG GRCz10/danRer10
DCD003319DT: BEDGRAPH GRCz10/danRer10
DCD003408DT: BAM GRCz10/danRer10
DCD008518DT: BIGWIG GRCz10/danRer10
DCD008521DT: BIGWIG GRCz10/danRer10
DCD013997DT: LOG GRCz11/danRer11
DCD013998DT: TSV GRCz11/danRer11
DCD013999DT: TSV GRCz11/danRer11
DCD014000DT: BEDGRAPH GRCz11/danRer11
DCD014001DT: BEDGRAPH GRCz11/danRer11
DCD014002DT: BEDGRAPH GRCz11/danRer11
DCD014003DT: BEDGRAPH GRCz11/danRer11
DCD014004DT: BIGWIG GRCz11/danRer11
DCD014005DT: BIGWIG GRCz11/danRer11
DCD014006DT: PDF GRCz11/danRer11
DCD014007DT: LOG GRCz11/danRer11
DCD014009DT: LOG GRCz11/danRer11
DCD014010DT: PDF GRCz11/danRer11
DCD014042DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001115SQ DCD001345TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000780DT: FASTQ
DCD001843DT: LOG GRCz10/danRer10
DCD001844DT: TSV GRCz10/danRer10
DCD001845DT: BEDGRAPH GRCz10/danRer10
DCD001847DT: BEDGRAPH GRCz10/danRer10
DCD001848DT: BEDGRAPH GRCz10/danRer10
DCD001850DT: BEDGRAPH GRCz10/danRer10
DCD001851DT: PDF GRCz10/danRer10
DCD001852DT: LOG GRCz10/danRer10
DCD001853DT: PDF GRCz10/danRer10
DCD001854DT: LOG GRCz10/danRer10
DCD001858DT: BEDGRAPH GRCz10/danRer10
DCD001897DT: BAM GRCz10/danRer10
DCD008558DT: BIGWIG GRCz10/danRer10
DCD008559DT: BIGWIG GRCz10/danRer10
DCD013984DT: LOG GRCz11/danRer11
DCD013985DT: TSV GRCz11/danRer11
DCD013986DT: TSV GRCz11/danRer11
DCD013987DT: BEDGRAPH GRCz11/danRer11
DCD013988DT: BEDGRAPH GRCz11/danRer11
DCD013989DT: BEDGRAPH GRCz11/danRer11
DCD013990DT: BIGWIG GRCz11/danRer11
DCD013991DT: BIGWIG GRCz11/danRer11
DCD013992DT: PDF GRCz11/danRer11
DCD013993DT: LOG GRCz11/danRer11
DCD013994DT: PDF GRCz11/danRer11
DCD013995DT: LOG GRCz11/danRer11
DCD013996DT: BEDGRAPH GRCz11/danRer11
DCD014031DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006614BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL 4-cell 1
Applied Assay ID Biosample Replicate Assay
DCD001345AA DCD012760BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001124SQ DCD001343TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000782DT: FASTQ
DCD003500DT: LOG GRCz10/danRer10
DCD003501DT: TSV GRCz10/danRer10
DCD003502DT: BEDGRAPH GRCz10/danRer10
DCD003504DT: BEDGRAPH GRCz10/danRer10
DCD003505DT: BEDGRAPH GRCz10/danRer10
DCD003507DT: PDF GRCz10/danRer10
DCD003508DT: BEDGRAPH GRCz10/danRer10
DCD003509DT: LOG GRCz10/danRer10
DCD003510DT: PDF GRCz10/danRer10
DCD003511DT: BEDGRAPH GRCz10/danRer10
DCD003512DT: LOG GRCz10/danRer10
DCD003601DT: BAM GRCz10/danRer10
DCD008528DT: BIGWIG GRCz10/danRer10
DCD008529DT: BIGWIG GRCz10/danRer10
DCD014024DT: LOG GRCz11/danRer11
DCD014025DT: TSV GRCz11/danRer11
DCD014026DT: TSV GRCz11/danRer11
DCD014027DT: BEDGRAPH GRCz11/danRer11
DCD014028DT: BEDGRAPH GRCz11/danRer11
DCD014029DT: BEDGRAPH GRCz11/danRer11
DCD014030DT: BEDGRAPH GRCz11/danRer11
DCD014032DT: BIGWIG GRCz11/danRer11
DCD014033DT: BIGWIG GRCz11/danRer11
DCD014034DT: LOG GRCz11/danRer11
DCD014035DT: PDF GRCz11/danRer11
DCD014036DT: LOG GRCz11/danRer11
DCD014037DT: PDF GRCz11/danRer11
DCD014068DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD001117SQ DCD001342TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 76 11/17/2011
DCD000783DT: FASTQ
DCD003441DT: LOG GRCz10/danRer10
DCD003442DT: TSV GRCz10/danRer10
DCD003443DT: BEDGRAPH GRCz10/danRer10
DCD003444DT: BEDGRAPH GRCz10/danRer10
DCD003445DT: BEDGRAPH GRCz10/danRer10
DCD003447DT: PDF GRCz10/danRer10
DCD003448DT: LOG GRCz10/danRer10
DCD003449DT: PDF GRCz10/danRer10
DCD003450DT: LOG GRCz10/danRer10
DCD003451DT: BEDGRAPH GRCz10/danRer10
DCD003453DT: BEDGRAPH GRCz10/danRer10
DCD003506DT: BAM GRCz10/danRer10
DCD008552DT: BIGWIG GRCz10/danRer10
DCD008553DT: BIGWIG GRCz10/danRer10
DCD014011DT: LOG GRCz11/danRer11
DCD014012DT: TSV GRCz11/danRer11
DCD014013DT: TSV GRCz11/danRer11
DCD014014DT: BEDGRAPH GRCz11/danRer11
DCD014015DT: BEDGRAPH GRCz11/danRer11
DCD014016DT: BEDGRAPH GRCz11/danRer11
DCD014017DT: BIGWIG GRCz11/danRer11
DCD014018DT: BIGWIG GRCz11/danRer11
DCD014019DT: BEDGRAPH GRCz11/danRer11
DCD014020DT: PDF GRCz11/danRer11
DCD014021DT: LOG GRCz11/danRer11
DCD014022DT: LOG GRCz11/danRer11
DCD014023DT: PDF GRCz11/danRer11
DCD014040DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007328BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Shield 6
Applied Assay ID Biosample Replicate Assay
DCD002786AA DCD014196BR ChIP-seq_Schier_Lab_Input_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003121SQ DCD003225TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 36 11/17/2018
DCD017433DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002787AA DCD014196BR ChIP-seq_Schier_Lab_H3K4me3_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Paired End Strand Maximum Read Length Sequencing Date
DCD003120SQ DCD003224TR Schier Lab, Harvard University Illumina HiSeq 2000 ✘ forward 36 11/17/2018
DCD017435DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002788AA DCD014196BR ChIP-seq_Schier_Lab_H3K27me3_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD003123SQ DCD003226TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 36 11/17/2018
DCD017434DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD007329BS DCD000225SR whole organism Schier Lab, Harvard University AB/TL Long-pec — — 48 —
Applied Assay ID Biosample Replicate Assay Controlled By
DCD002789AA DCD014197BR RNA-seq_Schier_Lab_0009AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD003122SQ DCD003228TR Schier Lab, Harvard University Illumina HiSeq 2000 — ✔ forward 76 11/17/2018
DCD017436DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Paired End Strand Maximum Read Length Sequencing Date
DCD003124SQ DCD003227TR Schier Lab, Harvard University Illumina HiSeq 2000 ✔ forward 76 11/17/2018
DCD017437DT: FASTQ