Data summary for DCD004039DT from sequencing run DCD001128SQ

LOG

GRCz10/danRer10

DANIO-CODE_RNA-Seq_ver_1.0|STAR_2.5.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --readFilesIn RNA-seq_Schier_Lab_0010AS.DCD001128SQ.USERagiess.R1.fastq RNA-seq_Schier_Lab_0010AS.DCD001128SQ.USERagiess.R2.fastq --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --genomeLoad NoSharedMemory --seedSearchStartLmax 12 --outWigStrand Stranded --outSAMtype BAM SortedByCoordinate --runThreadN 16 --outFilterMismatchNmax 33 --quantMode GeneCounts --outFilterType BySJout --outWigType bedGraph

freeze-01, freeze-02, freeze-03

danio-user

March 25, 2017, 10:17 a.m.

Nov. 22, 2018, 2:01 a.m.

This data is part of series

  • DCD000225SR titled Comprehensive identification of long non-coding RNAs expressed during zebrafish embryogenesis