Data summary for DCD009224DT from sequencing run DCD002508SQ

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GRCz10/danRer10

DANIO-CODE_RNA-Seq_ver_1.1|STAR_2.5.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --readFilesIn RNA-seq_Peers_Lab_0005AS.DCD002508SQ.USERmickael.dong.R1.fastq RNA-seq_Peers_Lab_0005AS.DCD002508SQ.USERmickael.dong.R2.fastq --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --genomeLoad NoSharedMemory --seedSearchStartLmax 12 --outWigStrand Stranded --outSAMtype BAM SortedByCoordinate --runThreadN 16 --limitBAMsortRAM 91952393078 --outFilterMismatchNmax 33 --quantMode GeneCounts --outFilterType BySJout --outWigType bedGraph

freeze-03

danio-user

June 8, 2018, 3:14 a.m.

Nov. 28, 2018, 3:34 a.m.

This data is part of series

  • DCD000394SR titled RNA-seq data from pancreatic cells: Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes