RNA-seq data from pancreatic cells: Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes
Survey
10.1186/s12915-017-0362-x
PRJEB10140
Defining the transcriptome and the genetic pathways of pancreatic cells is of great interest for elucidating the molecular attributes of pancreas disorders such as diabetes and cancer. As the function of the different pancreatic cell types has been maintained during vertebrate evolution, the comparison of their transcriptomes across distant vertebrate species is a means to pinpoint genes under strong evolutionary constraints due to their crucial function, which have therefore preserved their selective expression in these pancreatic cell types.
True
mickael.dong
Jan. 12, 2018, 7:43 a.m.
Nov. 15, 2018, 6:34 a.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007084BS | DCD000394SR | tissue | Peers Lab, University of Liege | AB | 90 Days-2 Years | pancreatic B cell | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002123AA | DCD013714BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002494SQ | DCD002520TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002493SQ | DCD002519TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002124AA | DCD013715BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002496SQ | DCD002522TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002495SQ | DCD002521TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002125AA | DCD013716BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002497SQ | DCD002523TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007085BS | DCD000394SR | tissue | Peers Lab, University of Liege | AB | 90 Days-2 Years | pancreatic A cell | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002126AA | DCD013717BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002499SQ | DCD002525TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002498SQ | DCD002524TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002127AA | DCD013718BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002501SQ | DCD002527TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002500SQ | DCD002526TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002128AA | DCD013719BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002502SQ | DCD002528TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007086BS | DCD000394SR | tissue | Peers Lab, University of Liege | AB | 90 Days-2 Years | pancreatic D cell | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002129AA | DCD013720BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002504SQ | DCD002530TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002503SQ | DCD002529TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002130AA | DCD013721BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002505SQ | DCD002531TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002131AA | DCD013722BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002506SQ | DCD002532TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Controlled By | anatomical_term | Treatment | Hours Post Fertilization | Mutation Description |
|---|---|---|---|---|---|---|---|---|---|---|
| DCD007087BS | DCD000394SR | tissue | Peers Lab, University of Liege | AB | 90 Days-2 Years | pancreatic acinar cell | — | adult | — |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002132AA | DCD013723BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002508SQ | DCD002534TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002507SQ | DCD002533TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002133AA | DCD013724BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002492SQ | DCD002518TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002509SQ | DCD002535TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002134AA | DCD013725BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002510SQ | DCD002536TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | 01/31/2017 |
| Applied Assay ID | Biosample Replicate | Assay | Controlled By |
|---|---|---|---|
| DCD002135AA | DCD013726BR | RNA-seq_Peers_Lab_0005AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|---|---|
| DCD002511SQ | DCD002537TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | Truseq | ✔ | unstranded | — | 01/31/2017 |