file type: BAM

Mapped genome: GRCz10/danRer10

Command: DANIO-CODE_RNA-Seq_ver_1.1|STAR_2.5.1b: /STAR --alignSJoverhangMin 15 --genomeDir genome --readFilesIn RNA-seq_Pandey_Lab_0001AS.DCD002418SQ.USERmickael.dong.R1.fastq RNA-seq_Pandey_Lab_0001AS.DCD002418SQ.USERmickael.dong.R2.fastq --outSAMstrandField intronMotif --outFilterMatchNminOverLread 0 --outSAMattributes NH HI AS NM MD --outSAMunmapped Within --outFilterScoreMinOverLread 0.3 --outFileNamePrefix ~/outputs/ --genomeLoad NoSharedMemory --seedSearchStartLmax 12 --outWigStrand Stranded --outSAMtype BAM SortedByCoordinate --runThreadN 16 --limitBAMsortRAM 91952393078 --outFilterMismatchNmax 33 --quantMode GeneCounts --outFilterType BySJout --outWigType bedGraph

Version: freeze-03

Added by User: danio-user

Date Added: June 8, 2018, 4:34 a.m.

Last Edited: Nov. 27, 2018, 6:49 a.m.