RNA-seq of 6 different tissues: Annotation of the Zebrafish Genome through an Integrated Transcriptomic and Proteomic Analysis
Survey
10.1074/mcp.M114.038299
SRX204106
RNA-seq data from 6 different adult tissues were obtained: eye, intestine/pancreas, liver, muscle, spleen and testis. 69,206 high-confidence transcripts were identified, including novel transcripts for 22,585 genes and 9,404 novel transcribed loci.
True
mickael.dong
Jan. 9, 2018, 2:06 a.m.
Oct. 22, 2018, 4:18 a.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007048BS | DCD000384SR | tissue | Pandey Lab, Johns Hopkins University School of Medicine | SAT | 90 Days-2 Years | eye | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002046AA | DCD013637BR | RNA-seq_Pandey_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002416SQ | DCD002428TR | Pandey Lab, Johns Hopkins University School of Medicine | Illumina | HiScanSQ | TruSeq RNA Sample Preparation Kit and SBS Kit v3 | ✔ | reverse | 07/22/2015 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007049BS | DCD000384SR | tissue | Pandey Lab, Johns Hopkins University School of Medicine | SAT | 90 Days-2 Years | intestine | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002047AA | DCD013638BR | RNA-seq_Pandey_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002417SQ | DCD002429TR | Pandey Lab, Johns Hopkins University School of Medicine | Illumina | HiScanSQ | TruSeq RNA Sample Preparation Kit and SBS Kit v3 | ✔ | reverse | 07/22/2015 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007050BS | DCD000384SR | tissue | Pandey Lab, Johns Hopkins University School of Medicine | SAT | 90 Days-2 Years | liver | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002048AA | DCD013639BR | RNA-seq_Pandey_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002418SQ | DCD002430TR | Pandey Lab, Johns Hopkins University School of Medicine | Illumina | HiScanSQ | TruSeq RNA Sample Preparation Kit and SBS Kit v3 | ✔ | reverse | 07/22/2015 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Controlled By | anatomical_term | Treatment | Hours Post Fertilization | Mutation Description |
|---|---|---|---|---|---|---|---|---|---|---|
| DCD007051BS | DCD000384SR | tissue | Pandey Lab, Johns Hopkins University School of Medicine | SAT | 90 Days-2 Years | muscle | — | adult | — |
| Applied Assay ID | Biosample Replicate | Assay | Controlled By |
|---|---|---|---|
| DCD002049AA | DCD013640BR | RNA-seq_Pandey_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|---|---|
| DCD002419SQ | DCD002431TR | Pandey Lab, Johns Hopkins University School of Medicine | Illumina | HiScanSQ | TruSeq RNA Sample Preparation Kit and SBS Kit v3 | ✔ | reverse | — | 07/22/2015 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007052BS | DCD000384SR | tissue | Pandey Lab, Johns Hopkins University School of Medicine | SAT | 90 Days-2 Years | spleen | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002050AA | DCD013641BR | RNA-seq_Pandey_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002420SQ | DCD002432TR | Pandey Lab, Johns Hopkins University School of Medicine | Illumina | HiScanSQ | TruSeq RNA Sample Preparation Kit and SBS Kit v3 | ✔ | reverse | 07/22/2015 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007053BS | DCD000384SR | tissue | Pandey Lab, Johns Hopkins University School of Medicine | SAT | 90 Days-2 Years | testis | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002051AA | DCD013642BR | RNA-seq_Pandey_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002421SQ | DCD002433TR | Pandey Lab, Johns Hopkins University School of Medicine | Illumina | HiScanSQ | TruSeq RNA Sample Preparation Kit and SBS Kit v3 | ✔ | reverse | 07/22/2015 |