Series Summary for DCD000139SR

Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs.

Survey

10.1016/j.celrep.2013.09.029

SRP030117

Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs.

True

giraldezlab

May 6, 2016, 9:36 a.m.

Oct. 22, 2018, 8:23 p.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006182BS DCD000139SR whole organism Giraldez Lab, Yale AB/TU Shield 6
Applied Assay ID Biosample Replicate Assay
DCD000915AA DCD012278BR RNA-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000691SQ DCD000855TR Giraldez Lab, Yale Illumina HiSeq 2000 reverse 06/28/2013
DCD000370DT: FASTQ
DCD001999DT: LOG GRCz10/danRer10
DCD002000DT: TSV GRCz10/danRer10
DCD002001DT: BEDGRAPH GRCz10/danRer10
DCD002002DT: BEDGRAPH GRCz10/danRer10
DCD002005DT: BEDGRAPH GRCz10/danRer10
DCD002006DT: PDF GRCz10/danRer10
DCD002007DT: BEDGRAPH GRCz10/danRer10
DCD002008DT: LOG GRCz10/danRer10
DCD002009DT: PDF GRCz10/danRer10
DCD002010DT: LOG GRCz10/danRer10
DCD002014DT: BEDGRAPH GRCz10/danRer10
DCD002038DT: BAM GRCz10/danRer10
DCD008659DT: BIGWIG GRCz10/danRer10
DCD008660DT: BIGWIG GRCz10/danRer10
DCD014448DT: LOG GRCz11/danRer11
DCD014449DT: TSV GRCz11/danRer11
DCD014450DT: BAM GRCz11/danRer11
DCD014451DT: TSV GRCz11/danRer11
DCD014452DT: BEDGRAPH GRCz11/danRer11
DCD014453DT: BEDGRAPH GRCz11/danRer11
DCD014454DT: BEDGRAPH GRCz11/danRer11
DCD014455DT: LOG GRCz11/danRer11
DCD014456DT: PDF GRCz11/danRer11
DCD014457DT: PDF GRCz11/danRer11
DCD014458DT: BIGWIG GRCz11/danRer11
DCD014459DT: BIGWIG GRCz11/danRer11
DCD014460DT: BEDGRAPH GRCz11/danRer11
DCD014461DT: LOG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006195BS DCD000139SR whole organism Giraldez Lab, Yale AB/TU Shield 6
Applied Assay ID Biosample Replicate Assay
DCD000928AA DCD012291BR RNA-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000741SQ DCD000868TR Giraldez Lab, Yale Illumina HiSeq 2000 reverse 06/28/2013
DCD000369DT: FASTQ
DCD002011DT: LOG GRCz10/danRer10
DCD002012DT: TSV GRCz10/danRer10
DCD002013DT: BEDGRAPH GRCz10/danRer10
DCD002015DT: BEDGRAPH GRCz10/danRer10
DCD002016DT: BEDGRAPH GRCz10/danRer10
DCD002017DT: BEDGRAPH GRCz10/danRer10
DCD002018DT: PDF GRCz10/danRer10
DCD002019DT: LOG GRCz10/danRer10
DCD002020DT: PDF GRCz10/danRer10
DCD002021DT: LOG GRCz10/danRer10
DCD002022DT: BEDGRAPH GRCz10/danRer10
DCD002047DT: BAM GRCz10/danRer10
DCD008652DT: BIGWIG GRCz10/danRer10
DCD008653DT: BIGWIG GRCz10/danRer10
DCD014755DT: LOG GRCz11/danRer11
DCD014756DT: TSV GRCz11/danRer11
DCD014757DT: TSV GRCz11/danRer11
DCD014759DT: BEDGRAPH GRCz11/danRer11
DCD014760DT: BIGWIG GRCz11/danRer11
DCD014761DT: BIGWIG GRCz11/danRer11
DCD014762DT: BEDGRAPH GRCz11/danRer11
DCD014763DT: BEDGRAPH GRCz11/danRer11
DCD014764DT: BEDGRAPH GRCz11/danRer11
DCD014765DT: PDF GRCz11/danRer11
DCD014766DT: LOG GRCz11/danRer11
DCD014767DT: LOG GRCz11/danRer11
DCD014768DT: PDF GRCz11/danRer11
DCD014773DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006199BS DCD000139SR whole organism Giraldez Lab, Yale AB/TU Shield 6
Applied Assay ID Biosample Replicate Assay
DCD000848AA DCD012295BR RNA-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000757SQ DCD000872TR Giraldez Lab, Yale Illumina HiSeq 2000 reverse 06/28/2013
DCD000368DT: FASTQ
DCD002059DT: LOG GRCz10/danRer10
DCD002060DT: TSV GRCz10/danRer10
DCD002061DT: BEDGRAPH GRCz10/danRer10
DCD002063DT: BEDGRAPH GRCz10/danRer10
DCD002064DT: BEDGRAPH GRCz10/danRer10
DCD002065DT: BEDGRAPH GRCz10/danRer10
DCD002066DT: PDF GRCz10/danRer10
DCD002067DT: LOG GRCz10/danRer10
DCD002069DT: PDF GRCz10/danRer10
DCD002070DT: LOG GRCz10/danRer10
DCD002073DT: BEDGRAPH GRCz10/danRer10
DCD002098DT: BAM GRCz10/danRer10
DCD008610DT: BIGWIG GRCz10/danRer10
DCD008611DT: BIGWIG GRCz10/danRer10
DCD014854DT: BAM GRCz11/danRer11
DCD014855DT: LOG GRCz11/danRer11
DCD014856DT: TSV GRCz11/danRer11
DCD014857DT: TSV GRCz11/danRer11
DCD014858DT: BEDGRAPH GRCz11/danRer11
DCD014859DT: PDF GRCz11/danRer11
DCD014860DT: BIGWIG GRCz11/danRer11
DCD014861DT: BIGWIG GRCz11/danRer11
DCD014862DT: BEDGRAPH GRCz11/danRer11
DCD014863DT: BEDGRAPH GRCz11/danRer11
DCD014864DT: BEDGRAPH GRCz11/danRer11
DCD014865DT: LOG GRCz11/danRer11
DCD014866DT: LOG GRCz11/danRer11
DCD014867DT: PDF GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006220BS DCD000139SR whole organism Giraldez Lab, Yale AB/TU Shield 6
Applied Assay ID Biosample Replicate Assay
DCD000869AA DCD012316BR RNA-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000697SQ DCD000893TR Giraldez Lab, Yale Illumina HiSeq 2000 reverse 06/28/2013
DCD000372DT: FASTQ
DCD003416DT: LOG GRCz10/danRer10
DCD003417DT: TSV GRCz10/danRer10
DCD003418DT: BEDGRAPH GRCz10/danRer10
DCD003420DT: BEDGRAPH GRCz10/danRer10
DCD003421DT: BEDGRAPH GRCz10/danRer10
DCD003422DT: BEDGRAPH GRCz10/danRer10
DCD003423DT: PDF GRCz10/danRer10
DCD003424DT: LOG GRCz10/danRer10
DCD003425DT: PDF GRCz10/danRer10
DCD003426DT: LOG GRCz10/danRer10
DCD003427DT: BEDGRAPH GRCz10/danRer10
DCD003439DT: BAM GRCz10/danRer10
DCD008596DT: BIGWIG GRCz10/danRer10
DCD008597DT: BIGWIG GRCz10/danRer10
DCD014473DT: LOG GRCz11/danRer11
DCD014477DT: TSV GRCz11/danRer11
DCD014478DT: TSV GRCz11/danRer11
DCD014479DT: BEDGRAPH GRCz11/danRer11
DCD014480DT: BAM GRCz11/danRer11
DCD014481DT: BEDGRAPH GRCz11/danRer11
DCD014482DT: BEDGRAPH GRCz11/danRer11
DCD014483DT: BEDGRAPH GRCz11/danRer11
DCD014484DT: BIGWIG GRCz11/danRer11
DCD014485DT: BIGWIG GRCz11/danRer11
DCD014486DT: PDF GRCz11/danRer11
DCD014487DT: LOG GRCz11/danRer11
DCD014488DT: LOG GRCz11/danRer11
DCD014489DT: PDF GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000699SQ DCD000893TR Giraldez Lab, Yale Illumina HiSeq 2000 reverse 06/28/2013
DCD000371DT: FASTQ
DCD001951DT: LOG GRCz10/danRer10
DCD001952DT: TSV GRCz10/danRer10
DCD001955DT: BEDGRAPH GRCz10/danRer10
DCD001956DT: BEDGRAPH GRCz10/danRer10
DCD001957DT: BEDGRAPH GRCz10/danRer10
DCD001958DT: PDF GRCz10/danRer10
DCD001959DT: LOG GRCz10/danRer10
DCD001960DT: PDF GRCz10/danRer10
DCD001961DT: LOG GRCz10/danRer10
DCD001962DT: BEDGRAPH GRCz10/danRer10
DCD002004DT: BAM GRCz10/danRer10
DCD002842DT: BEDGRAPH GRCz10/danRer10
DCD008644DT: BIGWIG GRCz10/danRer10
DCD008645DT: BIGWIG GRCz10/danRer10
DCD014490DT: LOG GRCz11/danRer11
DCD014491DT: TSV GRCz11/danRer11
DCD014492DT: TSV GRCz11/danRer11
DCD014493DT: BIGWIG GRCz11/danRer11
DCD014494DT: BIGWIG GRCz11/danRer11
DCD014495DT: BEDGRAPH GRCz11/danRer11
DCD014496DT: BEDGRAPH GRCz11/danRer11
DCD014497DT: PDF GRCz11/danRer11
DCD014498DT: LOG GRCz11/danRer11
DCD014499DT: PDF GRCz11/danRer11
DCD014500DT: LOG GRCz11/danRer11
DCD014501DT: BEDGRAPH GRCz11/danRer11
DCD014502DT: BEDGRAPH GRCz11/danRer11
DCD014517DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006228BS DCD000139SR whole organism Giraldez Lab, Yale AB/TU Shield 6
Applied Assay ID Biosample Replicate Assay
DCD000877AA DCD012324BR RNA-seq_Giraldez_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000738SQ DCD000901TR Giraldez Lab, Yale Illumina HiSeq 2000 reverse 06/28/2013
DCD000373DT: FASTQ
DCD003549DT: LOG GRCz10/danRer10
DCD003550DT: TSV GRCz10/danRer10
DCD003551DT: BEDGRAPH GRCz10/danRer10
DCD003553DT: BEDGRAPH GRCz10/danRer10
DCD003554DT: BEDGRAPH GRCz10/danRer10
DCD003555DT: PDF GRCz10/danRer10
DCD003556DT: LOG GRCz10/danRer10
DCD003557DT: BEDGRAPH GRCz10/danRer10
DCD003558DT: PDF GRCz10/danRer10
DCD003559DT: LOG GRCz10/danRer10
DCD003563DT: BEDGRAPH GRCz10/danRer10
DCD003579DT: BAM GRCz10/danRer10
DCD008566DT: BIGWIG GRCz10/danRer10
DCD008567DT: BIGWIG GRCz10/danRer10
DCD014728DT: LOG GRCz11/danRer11
DCD014729DT: TSV GRCz11/danRer11
DCD014730DT: TSV GRCz11/danRer11
DCD014731DT: BEDGRAPH GRCz11/danRer11
DCD014732DT: BEDGRAPH GRCz11/danRer11
DCD014733DT: PDF GRCz11/danRer11
DCD014734DT: BIGWIG GRCz11/danRer11
DCD014735DT: BIGWIG GRCz11/danRer11
DCD014736DT: LOG GRCz11/danRer11
DCD014737DT: LOG GRCz11/danRer11
DCD014738DT: PDF GRCz11/danRer11
DCD014739DT: BEDGRAPH GRCz11/danRer11
DCD014740DT: BAM GRCz11/danRer11
DCD014743DT: BEDGRAPH GRCz11/danRer11