Eomesodermin targets at sphere stage with RNA-seq
Case Control
10.1186/s12915-014-0081-5
GSE51893
Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression
True
andrea_kcl
May 9, 2016, 4:30 a.m.
Oct. 22, 2018, 10:18 p.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006274BS | DCD000145SR | whole organism | Wardle Lab, King's College London | AB | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000945AA | DCD012372BR | RNA-seq_Wardle_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000814SQ | DCD000941TR | Johns Hopkins Deep Sequencing and Microarray Core Facility | Illumina | HiSeq 2000 | unstranded | 01/01/2014 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000944AA | DCD012373BR | RNA-seq_Wardle_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD000813SQ | DCD000940TR | Johns Hopkins Deep Sequencing and Microarray Core Facility | Illumina | HiSeq 2000 | unstranded | — | 01/01/2014 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006275BS | DCD000145SR | whole organism | Wardle Lab, King's College London | AB | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000947AA | DCD012370BR | RNA-seq_Wardle_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000816SQ | DCD000943TR | Johns Hopkins Deep Sequencing and Microarray Core Facility | Illumina | HiSeq 2000 | unstranded | 01/14/2014 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD000946AA | DCD012371BR | RNA-seq_Wardle_Lab_0003AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000815SQ | DCD000942TR | Johns Hopkins Deep Sequencing and Microarray Core Facility | Illumina | HiSeq 2000 | unstranded | 01/01/2014 |