Series Summary for DCD000145SR

Eomesodermin targets at sphere stage with RNA-seq

Case Control

10.1186/s12915-014-0081-5

GSE51893

Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression

True

andrea_kcl

May 9, 2016, 4:30 a.m.

Oct. 22, 2018, 10:18 p.m.

Assays

Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By Anatomical Term Treatment Hours Post Fertilization Mutation Description
DCD006274BS DCD000145SR whole organism Wardle Lab, King's College London AB Sphere 4
Applied Assay ID Biosample Replicate Assay
DCD000945AA DCD012372BR RNA-seq_Wardle_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000814SQ DCD000941TR Johns Hopkins Deep Sequencing and Microarray Core Facility Illumina HiSeq 2000 unstranded 01/01/2014
DCD000521DT: FASTQ
DCD003944DT: LOG GRCz10/danRer10
DCD003945DT: TSV GRCz10/danRer10
DCD003946DT: BEDGRAPH GRCz10/danRer10
DCD003949DT: BEDGRAPH GRCz10/danRer10
DCD003950DT: BEDGRAPH GRCz10/danRer10
DCD003951DT: PDF GRCz10/danRer10
DCD003952DT: LOG GRCz10/danRer10
DCD003953DT: PDF GRCz10/danRer10
DCD003954DT: BEDGRAPH GRCz10/danRer10
DCD003955DT: LOG GRCz10/danRer10
DCD003961DT: BEDGRAPH GRCz10/danRer10
DCD003993DT: BAM GRCz10/danRer10
DCD008677DT: BIGWIG GRCz10/danRer10
DCD015209DT: LOG GRCz11/danRer11
DCD015210DT: TSV GRCz11/danRer11
DCD015211DT: TSV GRCz11/danRer11
DCD015213DT: BIGWIG GRCz11/danRer11
DCD015214DT: LOG GRCz11/danRer11
DCD015215DT: PDF GRCz11/danRer11
DCD015216DT: PDF GRCz11/danRer11
DCD015217DT: LOG GRCz11/danRer11
DCD015220DT: BEDGRAPH GRCz11/danRer11
DCD015221DT: BEDGRAPH GRCz11/danRer11
DCD015243DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay Controlled By
DCD000944AA DCD012373BR RNA-seq_Wardle_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD000813SQ DCD000940TR Johns Hopkins Deep Sequencing and Microarray Core Facility Illumina HiSeq 2000 unstranded 01/01/2014
DCD000520DT: FASTQ
DCD001634DT: LOG GRCz10/danRer10
DCD001635DT: TSV GRCz10/danRer10
DCD001636DT: BEDGRAPH GRCz10/danRer10
DCD001638DT: BEDGRAPH GRCz10/danRer10
DCD001639DT: BEDGRAPH GRCz10/danRer10
DCD001640DT: BEDGRAPH GRCz10/danRer10
DCD001641DT: PDF GRCz10/danRer10
DCD001642DT: LOG GRCz10/danRer10
DCD001643DT: PDF GRCz10/danRer10
DCD001644DT: LOG GRCz10/danRer10
DCD001646DT: BEDGRAPH GRCz10/danRer10
DCD001668DT: BAM GRCz10/danRer10
DCD008719DT: BIGWIG GRCz10/danRer10
DCD015198DT: LOG GRCz11/danRer11
DCD015199DT: TSV GRCz11/danRer11
DCD015200DT: TSV GRCz11/danRer11
DCD015202DT: BIGWIG GRCz11/danRer11
DCD015204DT: PDF GRCz11/danRer11
DCD015205DT: BEDGRAPH GRCz11/danRer11
DCD015206DT: LOG GRCz11/danRer11
DCD015207DT: PDF GRCz11/danRer11
DCD015208DT: LOG GRCz11/danRer11
DCD015212DT: BEDGRAPH GRCz11/danRer11
DCD015260DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006275BS DCD000145SR whole organism Wardle Lab, King's College London AB Sphere 4
Applied Assay ID Biosample Replicate Assay
DCD000947AA DCD012370BR RNA-seq_Wardle_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000816SQ DCD000943TR Johns Hopkins Deep Sequencing and Microarray Core Facility Illumina HiSeq 2000 unstranded 01/14/2014
DCD000523DT: FASTQ
DCD003874DT: LOG GRCz10/danRer10
DCD003875DT: TSV GRCz10/danRer10
DCD003876DT: BEDGRAPH GRCz10/danRer10
DCD003877DT: BEDGRAPH GRCz10/danRer10
DCD003878DT: BEDGRAPH GRCz10/danRer10
DCD003879DT: PDF GRCz10/danRer10
DCD003880DT: LOG GRCz10/danRer10
DCD003881DT: PDF GRCz10/danRer10
DCD003882DT: LOG GRCz10/danRer10
DCD003883DT: BEDGRAPH GRCz10/danRer10
DCD003889DT: BEDGRAPH GRCz10/danRer10
DCD003926DT: BAM GRCz10/danRer10
DCD008684DT: BIGWIG GRCz10/danRer10
DCD015229DT: LOG GRCz11/danRer11
DCD015230DT: TSV GRCz11/danRer11
DCD015231DT: TSV GRCz11/danRer11
DCD015233DT: BEDGRAPH GRCz11/danRer11
DCD015234DT: BIGWIG GRCz11/danRer11
DCD015235DT: PDF GRCz11/danRer11
DCD015236DT: LOG GRCz11/danRer11
DCD015237DT: PDF GRCz11/danRer11
DCD015238DT: LOG GRCz11/danRer11
DCD015239DT: BEDGRAPH GRCz11/danRer11
DCD015246DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD000946AA DCD012371BR RNA-seq_Wardle_Lab_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD000815SQ DCD000942TR Johns Hopkins Deep Sequencing and Microarray Core Facility Illumina HiSeq 2000 unstranded 01/01/2014
DCD000522DT: FASTQ
DCD003740DT: LOG GRCz10/danRer10
DCD003741DT: TSV GRCz10/danRer10
DCD003742DT: BEDGRAPH GRCz10/danRer10
DCD003744DT: BEDGRAPH GRCz10/danRer10
DCD003745DT: BEDGRAPH GRCz10/danRer10
DCD003746DT: BEDGRAPH GRCz10/danRer10
DCD003747DT: PDF GRCz10/danRer10
DCD003748DT: LOG GRCz10/danRer10
DCD003749DT: PDF GRCz10/danRer10
DCD003750DT: LOG GRCz10/danRer10
DCD003755DT: BEDGRAPH GRCz10/danRer10
DCD003805DT: BAM GRCz10/danRer10
DCD008690DT: BIGWIG GRCz10/danRer10
DCD015218DT: LOG GRCz11/danRer11
DCD015219DT: TSV GRCz11/danRer11
DCD015222DT: TSV GRCz11/danRer11
DCD015223DT: BIGWIG GRCz11/danRer11
DCD015224DT: PDF GRCz11/danRer11
DCD015225DT: LOG GRCz11/danRer11
DCD015226DT: PDF GRCz11/danRer11
DCD015227DT: LOG GRCz11/danRer11
DCD015228DT: BEDGRAPH GRCz11/danRer11
DCD015232DT: BEDGRAPH GRCz11/danRer11
DCD015254DT: BAM GRCz11/danRer11