Series Summary for DCD000180SR

Ribosome Profiling over a Zebrafish Developmental Timecourse

Survey

10.1242/dev.098343

GSE46512

Ribosome profiling reveals resemblance between long non-coding RNAs and 5 prime leaders of coding RNAs

True

agiess

May 24, 2016, 5:35 a.m.

Sept. 27, 2017, 8:41 a.m.

Assays

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006433BS DCD000180SR whole organism Schier Lab, Harvard University AB/TL Day 5 120
Applied Assay ID Biosample Replicate Assay
DCD001102AA DCD012563BR Ribo-seq_Schier_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000898SQ DCD001106TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 44 05/23/2013
DCD000609DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006435BS DCD000180SR whole organism Schier Lab, Harvard University AB/TL Bud 10
Applied Assay ID Biosample Replicate Assay
DCD001104AA DCD012556BR Ribo-seq_Schier_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000897SQ DCD001099TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 44 05/23/2013
DCD000611DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006436BS DCD000180SR whole organism Schier Lab, Harvard University AB/TL Prim-15 28
Applied Assay ID Biosample Replicate Assay
DCD001105AA DCD012559BR Ribo-seq_Schier_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000903SQ DCD001112TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 44 05/23/2013
DCD000610DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006437BS DCD000180SR whole organism Schier Lab, Harvard University AB/TL Dome 4.33
Applied Assay ID Biosample Replicate Assay
DCD001106AA DCD012566BR Ribo-seq_Schier_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000901SQ DCD001109TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 44 05/23/2013
DCD000613DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006438BS DCD000180SR whole organism Schier Lab, Harvard University AB/TL Shield 6
Applied Assay ID Biosample Replicate Assay
DCD001107AA DCD012561BR Ribo-seq_Schier_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000890SQ DCD001114TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 44 05/23/2013
DCD000612DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006439BS DCD000180SR whole organism Schier Lab, Harvard University AB/TL 256-cell 2.5
Applied Assay ID Biosample Replicate Assay
DCD001108AA DCD012558BR Ribo-seq_Schier_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000893SQ DCD001104TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 44 05/23/2013
DCD000615DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006440BS DCD000180SR whole organism Schier Lab, Harvard University AB/TL 1k-cell 3
Applied Assay ID Biosample Replicate Assay
DCD001109AA DCD012568BR Ribo-seq_Schier_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD000895SQ DCD001103TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 44 05/23/2013
DCD000614DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD006441BS DCD000180SR whole organism Schier Lab, Harvard University AB/TL 4-cell 1
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001110AA DCD012570BR Ribo-seq_Schier_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD000892SQ DCD001101TR Schier Lab, Harvard University Illumina HiSeq 2000 forward 44 05/23/2013
DCD000616DT: FASTQ