Ribosome Profiling over a Zebrafish Developmental Timecourse
Survey
10.1242/dev.098343
GSE46512
Ribosome profiling reveals resemblance between long non-coding RNAs and 5 prime leaders of coding RNAs
True
agiess
May 24, 2016, 5:35 a.m.
Sept. 27, 2017, 8:41 a.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006433BS | DCD000180SR | whole organism | Schier Lab, Harvard University | AB/TL | Day 5 | 120 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001102AA | DCD012563BR | Ribo-seq_Schier_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000898SQ | DCD001106TR | Schier Lab, Harvard University | Illumina | HiSeq 2000 | forward | 05/23/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006435BS | DCD000180SR | whole organism | Schier Lab, Harvard University | AB/TL | Bud | 10 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001104AA | DCD012556BR | Ribo-seq_Schier_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000897SQ | DCD001099TR | Schier Lab, Harvard University | Illumina | HiSeq 2000 | forward | 05/23/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006436BS | DCD000180SR | whole organism | Schier Lab, Harvard University | AB/TL | Prim-15 | 28 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001105AA | DCD012559BR | Ribo-seq_Schier_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000903SQ | DCD001112TR | Schier Lab, Harvard University | Illumina | HiSeq 2000 | forward | 05/23/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006437BS | DCD000180SR | whole organism | Schier Lab, Harvard University | AB/TL | Dome | 4.33 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001106AA | DCD012566BR | Ribo-seq_Schier_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000901SQ | DCD001109TR | Schier Lab, Harvard University | Illumina | HiSeq 2000 | forward | 05/23/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006438BS | DCD000180SR | whole organism | Schier Lab, Harvard University | AB/TL | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001107AA | DCD012561BR | Ribo-seq_Schier_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000890SQ | DCD001114TR | Schier Lab, Harvard University | Illumina | HiSeq 2000 | forward | 05/23/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006439BS | DCD000180SR | whole organism | Schier Lab, Harvard University | AB/TL | 256-cell | 2.5 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001108AA | DCD012558BR | Ribo-seq_Schier_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000893SQ | DCD001104TR | Schier Lab, Harvard University | Illumina | HiSeq 2000 | forward | 05/23/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006440BS | DCD000180SR | whole organism | Schier Lab, Harvard University | AB/TL | 1k-cell | 3 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001109AA | DCD012568BR | Ribo-seq_Schier_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000895SQ | DCD001103TR | Schier Lab, Harvard University | Illumina | HiSeq 2000 | forward | 05/23/2013 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006441BS | DCD000180SR | whole organism | Schier Lab, Harvard University | AB/TL | 4-cell | — | 1 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001110AA | DCD012570BR | Ribo-seq_Schier_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD000892SQ | DCD001101TR | Schier Lab, Harvard University | Illumina | HiSeq 2000 | forward | 05/23/2013 |