Series Summary for DCD000203SR

Zebrafish Globin Locus (DNAse and ChIP-seq data)

Survey

10.1016/j.ydbio.2012.03.021

GSE35895

Genome-wide analysis of 1) DNase I hypersensitivity sites in zebrafish adult red blood cells (GSE35875) and 2) H3K4me3 modifications, Gata1 binding in zebrafish adult red blood cells (GSE35874)

True

syang

June 2, 2016, 3:02 p.m.

Nov. 7, 2018, 2:55 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD006557BS DCD000203SR tissue Zon Lab, Boston Children's Hospital WT 90 Days-2 Years blood adult
Applied Assay ID Biosample Replicate Assay
DCD001254AA DCD012691BR DNAse-seq_Zon_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001017SQ DCD001260TR Zon Lab, Boston Children's Hospital Illumina GAIIx 40 01/01/2010
DCD000662DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001009SQ DCD001254TR Zon Lab, Boston Children's Hospital Illumina GAIIx 40 01/01/2010
DCD000659DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001010SQ DCD001253TR Zon Lab, Boston Children's Hospital Illumina GAIIx 40 01/01/2010
DCD000658DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001023SQ DCD001232TR Zon Lab, Boston Children's Hospital Illumina GAIIx 40 01/01/2010
DCD000660DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD006558BS DCD000203SR tissue Zon Lab, Boston Children's Hospital WT 90 Days-2 Years liver adult
Applied Assay ID Biosample Replicate Assay
DCD001258AA DCD012686BR DNAse-seq_Zon_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001033SQ DCD001263TR Zon Lab, Boston Children's Hospital Illumina GAIIx 40 01/01/2010
DCD000657DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001018SQ DCD001251TR Zon Lab, Boston Children's Hospital Illumina GAIIx 40 01/01/2010
DCD000656DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD006560BS DCD000203SR tissue Zon Lab, Boston Children's Hospital WT 90 Days-2 Years blood cell — adult —
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001233AA DCD012673BR ChIP-seq_Zon_Lab_Input_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001032SQ DCD001248TR Zon Lab, Boston Children's Hospital Illumina GAIIx 40 06/15/2010
DCD000680DT: FASTQ
DCD006508DT: LOG GRCz10/danRer10
DCD006511DT: LOG GRCz10/danRer10
DCD006513DT: BAM GRCz10/danRer10
DCD006516DT: LOG GRCz10/danRer10
DCD006517DT: LOG GRCz10/danRer10
DCD006518DT: PDF GRCz10/danRer10
DCD006519DT: LOG GRCz10/danRer10
DCD006521DT: BAM GRCz10/danRer10
DCD006524DT: BAM GRCz10/danRer10
DCD006527DT: BAM GRCz10/danRer10
DCD006530DT: BAM GRCz10/danRer10
DCD017028DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001234AA DCD012673BR ChIP-seq_Zon_Lab_H3K4me3_0002AS DCD001233AA
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001028SQ DCD001245TR Zon Lab, Boston Children's Hospital Illumina GAIIx — ✘ — 40 06/15/2010
DCD000676DT: FASTQ
DCD006497DT: LOG GRCz10/danRer10
DCD006500DT: LOG GRCz10/danRer10
DCD006501DT: BAM GRCz10/danRer10
DCD006503DT: LOG GRCz10/danRer10
DCD006504DT: LOG GRCz10/danRer10
DCD006506DT: PDF GRCz10/danRer10
DCD006507DT: LOG GRCz10/danRer10
DCD006509DT: BAM GRCz10/danRer10
DCD006512DT: BAM GRCz10/danRer10
DCD006514DT: BAM GRCz10/danRer10
DCD006515DT: BAM GRCz10/danRer10
DCD008996DT: BIGNARROWPEAK GRCz10/danRer10
DCD009114DT: BIGWIG GRCz10/danRer10
DCD016260DT: BIGNARROWPEAK GRCz11/danRer11
DCD016261DT: BED GRCz11/danRer11
DCD016263DT: BAM GRCz11/danRer11
DCD016264DT: BIGNARROWPEAK GRCz11/danRer11
DCD016265DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001256AA DCD012679BR ChIP-seq_Zon_Lab_zgata1_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001022SQ DCD001258TR Zon Lab, Boston Children's Hospital Illumina GAIIx 40 06/15/2010
DCD000666DT: FASTQ
DCD006476DT: LOG GRCz10/danRer10
DCD006479DT: BAM GRCz10/danRer10
DCD006480DT: LOG GRCz10/danRer10
DCD006481DT: BAM GRCz10/danRer10
DCD006482DT: LOG GRCz10/danRer10
DCD006483DT: LOG GRCz10/danRer10
DCD006484DT: PDF GRCz10/danRer10
DCD006485DT: LOG GRCz10/danRer10
DCD006487DT: BAM GRCz10/danRer10
DCD006491DT: BAM GRCz10/danRer10
DCD006498DT: BAM GRCz10/danRer10
DCD009004DT: BIGNARROWPEAK GRCz10/danRer10
DCD009119DT: BIGWIG GRCz10/danRer10
DCD016110DT: BIGNARROWPEAK GRCz11/danRer11
DCD016111DT: BIGNARROWPEAK GRCz11/danRer11
DCD016112DT: BED GRCz11/danRer11
DCD016114DT: BAM GRCz11/danRer11
DCD016117DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001257AA DCD012679BR ChIP-seq_Zon_Lab_Input_0003AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001034SQ DCD001255TR Zon Lab, Boston Children's Hospital Illumina GAIIx 40 06/15/2010
DCD000674DT: FASTQ
DCD006486DT: LOG GRCz10/danRer10
DCD006489DT: LOG GRCz10/danRer10
DCD006490DT: BAM GRCz10/danRer10
DCD006492DT: LOG GRCz10/danRer10
DCD006493DT: LOG GRCz10/danRer10
DCD006495DT: PDF GRCz10/danRer10
DCD006496DT: LOG GRCz10/danRer10
DCD006499DT: BAM GRCz10/danRer10
DCD006502DT: BAM GRCz10/danRer10
DCD006505DT: BAM GRCz10/danRer10
DCD006510DT: BAM GRCz10/danRer10
DCD017014DT: BAM GRCz11/danRer11