Embryonic promoterome
Survey
10.1101/gr.153692.112
SRA055273
Embryonic promoterome
True
dunjanik
July 27, 2016, 5:56 a.m.
Nov. 7, 2018, 2:56 a.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006673BS | DCD000243SR | whole organism | Mueller lab, University of Birmingham | AB | 30%-epiboly | 4.7 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001465AA | DCD012944BR | ChIP-seq_Mueller_lab_Mock_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD001518SQ | DCD001479TR | Rotterdam Genomics core, Erasmus MC | Illumina | GAIIx | 36 | 03/01/2010 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001459AA | DCD012949BR | ChIP-seq_Mueller_lab_H3K4me3_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD001530SQ | DCD001458TR | Rotterdam Genomics core, Erasmus MC | Illumina | GAIIx | 36 | 03/01/2010 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001466AA | DCD012956BR | ChIP-seq_Mueller_lab_H3K4me3_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD001517SQ | DCD001480TR | Rotterdam Genomics core, Erasmus MC | Illumina | GAIIx | 36 | 03/04/2010 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001438AA | DCD012957BR | RNA-seq_Mueller_lab_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD001539SQ | DCD001474TR | Barts and The London Genome Center, Queen Mary University of London | Illumina | GAIIx | 76 | 11/01/2009 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006675BS | DCD000243SR | whole organism | Mueller lab, University of Birmingham | AB | Prim-5 | 25 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001462AA | DCD012932BR | RNA-seq_Mueller_lab_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD001541SQ | DCD001481TR | Barts and The London Genome Center, Queen Mary University of London | Illumina | GAIIx | 76 | 11/01/2009 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001464AA | DCD012935BR | ChIP-seq_Mueller_lab_H3K4me3_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD001540SQ | DCD001488TR | Rotterdam Genomics core, Erasmus MC | Illumina | GAIIx | 36 | 03/01/2010 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001458AA | DCD012947BR | ChIP-seq_Mueller_lab_Mock_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD001542SQ | DCD001460TR | Rotterdam Genomics core, Erasmus MC | Illumina | GAIIx | 36 | 03/01/2010 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001463AA | DCD012954BR | ChIP-seq_Mueller_lab_H3K4me3_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD001525SQ | DCD001477TR | Rotterdam Genomics core, Erasmus MC | Illumina | GAIIx | 36 | 06/27/2011 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006677BS | DCD000243SR | whole organism | Mueller lab, University of Birmingham | AB | 512-cell | 2.75 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001461AA | DCD012962BR | ChIP-seq_Mueller_lab_H3K4me3_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD001529SQ | DCD001484TR | Rotterdam Genomics core, Erasmus MC | Illumina | GAIIx | 36 | 06/17/2011 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD006678BS | DCD000243SR | whole organism | Mueller lab, University of Birmingham | AB | Oblong | 3.7 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001460AA | DCD012941BR | ChIP-seq_Mueller_lab_H3K4me3_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Paired End | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD001524SQ | DCD001485TR | Rotterdam Genomics core, Erasmus MC | Illumina | GAIIx | ✘ | 36 | 06/17/2011 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Controlled By | anatomical_term | Treatment | Hours Post Fertilization | Mutation Description |
|---|---|---|---|---|---|---|---|---|---|---|
| DCD006700BS | DCD000243SR | whole organism | Mueller lab, University of Birmingham | AB | 14-19 somites | — | — | 17 | — |
| Applied Assay ID | Biosample Replicate | Assay | Controlled By |
|---|---|---|---|
| DCD001439AA | DCD012951BR | RNA-seq_Mueller_lab_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|---|---|
| DCD001535SQ | DCD001471TR | Barts and The London Genome Center, Queen Mary University of London | Illumina | GAIIx | — | ✔ | — | 76 | 11/01/2009 |