Series Summary for DCD000243SR

Embryonic promoterome

Survey

10.1101/gr.153692.112

SRA055273

Embryonic promoterome

True

dunjanik

July 27, 2016, 5:56 a.m.

Nov. 7, 2018, 2:56 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006673BS DCD000243SR whole organism Mueller lab, University of Birmingham AB 30%-epiboly 4.7
Applied Assay ID Biosample Replicate Assay
DCD001465AA DCD012944BR ChIP-seq_Mueller_lab_Mock_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001518SQ DCD001479TR Rotterdam Genomics core, Erasmus MC Illumina GAIIx 36 03/01/2010
DCD001174DT: FASTQ
DCD006700DT: LOG GRCz10/danRer10
DCD006703DT: LOG GRCz10/danRer10
DCD006704DT: BAM GRCz10/danRer10
DCD006707DT: LOG GRCz10/danRer10
DCD006708DT: LOG GRCz10/danRer10
DCD006709DT: PDF GRCz10/danRer10
DCD006710DT: LOG GRCz10/danRer10
DCD006712DT: BAM GRCz10/danRer10
DCD006713DT: BAM GRCz10/danRer10
DCD006714DT: BAM GRCz10/danRer10
DCD006719DT: BAM GRCz10/danRer10
DCD017033DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001459AA DCD012949BR ChIP-seq_Mueller_lab_H3K4me3_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001530SQ DCD001458TR Rotterdam Genomics core, Erasmus MC Illumina GAIIx 36 03/01/2010
DCD001176DT: FASTQ
DCD006722DT: LOG GRCz10/danRer10
DCD006723DT: BAM GRCz10/danRer10
DCD006724DT: LOG GRCz10/danRer10
DCD006725DT: LOG GRCz10/danRer10
DCD006726DT: LOG GRCz10/danRer10
DCD006727DT: PDF GRCz10/danRer10
DCD006729DT: LOG GRCz10/danRer10
DCD006732DT: BAM GRCz10/danRer10
DCD006735DT: BAM GRCz10/danRer10
DCD006739DT: BAM GRCz10/danRer10
DCD006757DT: BAM GRCz10/danRer10
DCD008955DT: BIGNARROWPEAK GRCz10/danRer10
DCD009066DT: BIGWIG GRCz10/danRer10
DCD016300DT: BAM GRCz11/danRer11
DCD016301DT: BIGNARROWPEAK GRCz11/danRer11
DCD016302DT: BED GRCz11/danRer11
DCD016303DT: BIGNARROWPEAK GRCz11/danRer11
DCD016304DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001466AA DCD012956BR ChIP-seq_Mueller_lab_H3K4me3_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001517SQ DCD001480TR Rotterdam Genomics core, Erasmus MC Illumina GAIIx 36 03/04/2010
DCD001175DT: FASTQ
DCD006711DT: LOG GRCz10/danRer10
DCD006715DT: BAM GRCz10/danRer10
DCD006716DT: LOG GRCz10/danRer10
DCD006717DT: LOG GRCz10/danRer10
DCD006718DT: LOG GRCz10/danRer10
DCD006720DT: PDF GRCz10/danRer10
DCD006721DT: LOG GRCz10/danRer10
DCD006756DT: BAM GRCz10/danRer10
DCD006758DT: BAM GRCz10/danRer10
DCD006759DT: BAM GRCz10/danRer10
DCD006761DT: BAM GRCz10/danRer10
DCD008953DT: BIGNARROWPEAK GRCz10/danRer10
DCD009062DT: BIGWIG GRCz10/danRer10
DCD016294DT: BED GRCz11/danRer11
DCD016296DT: BAM GRCz11/danRer11
DCD016297DT: BIGNARROWPEAK GRCz11/danRer11
DCD016298DT: BIGNARROWPEAK GRCz11/danRer11
DCD016299DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001438AA DCD012957BR RNA-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001539SQ DCD001474TR Barts and The London Genome Center, Queen Mary University of London Illumina GAIIx 76 11/01/2009
DCD001181DT: FASTQ
DCD004160DT: LOG GRCz10/danRer10
DCD004161DT: TSV GRCz10/danRer10
DCD004162DT: BEDGRAPH GRCz10/danRer10
DCD004164DT: BEDGRAPH GRCz10/danRer10
DCD004165DT: BEDGRAPH GRCz10/danRer10
DCD004166DT: BEDGRAPH GRCz10/danRer10
DCD004167DT: PDF GRCz10/danRer10
DCD004168DT: LOG GRCz10/danRer10
DCD004169DT: PDF GRCz10/danRer10
DCD004170DT: LOG GRCz10/danRer10
DCD004171DT: BEDGRAPH GRCz10/danRer10
DCD004209DT: BAM GRCz10/danRer10
DCD008672DT: BIGWIG GRCz10/danRer10
DCD013391DT: LOG GRCz11/danRer11
DCD013392DT: TSV GRCz11/danRer11
DCD013393DT: TSV GRCz11/danRer11
DCD013394DT: PDF GRCz11/danRer11
DCD013395DT: BIGWIG GRCz11/danRer11
DCD013396DT: LOG GRCz11/danRer11
DCD013397DT: LOG GRCz11/danRer11
DCD013398DT: PDF GRCz11/danRer11
DCD013399DT: BEDGRAPH GRCz11/danRer11
DCD013400DT: BEDGRAPH GRCz11/danRer11
DCD013426DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006675BS DCD000243SR whole organism Mueller lab, University of Birmingham AB Prim-5 25
Applied Assay ID Biosample Replicate Assay
DCD001462AA DCD012932BR RNA-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001541SQ DCD001481TR Barts and The London Genome Center, Queen Mary University of London Illumina GAIIx 76 11/01/2009
DCD001179DT: FASTQ
DCD004150DT: LOG GRCz10/danRer10
DCD004151DT: TSV GRCz10/danRer10
DCD004152DT: BEDGRAPH GRCz10/danRer10
DCD004153DT: BEDGRAPH GRCz10/danRer10
DCD004154DT: BEDGRAPH GRCz10/danRer10
DCD004155DT: BEDGRAPH GRCz10/danRer10
DCD004156DT: PDF GRCz10/danRer10
DCD004157DT: LOG GRCz10/danRer10
DCD004158DT: PDF GRCz10/danRer10
DCD004159DT: LOG GRCz10/danRer10
DCD004163DT: BEDGRAPH GRCz10/danRer10
DCD004211DT: BAM GRCz10/danRer10
DCD008674DT: BIGWIG GRCz10/danRer10
DCD013401DT: LOG GRCz11/danRer11
DCD013402DT: TSV GRCz11/danRer11
DCD013403DT: TSV GRCz11/danRer11
DCD013404DT: BIGWIG GRCz11/danRer11
DCD013405DT: BEDGRAPH GRCz11/danRer11
DCD013406DT: BEDGRAPH GRCz11/danRer11
DCD013407DT: PDF GRCz11/danRer11
DCD013409DT: LOG GRCz11/danRer11
DCD013410DT: LOG GRCz11/danRer11
DCD013411DT: PDF GRCz11/danRer11
DCD013427DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001464AA DCD012935BR ChIP-seq_Mueller_lab_H3K4me3_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001540SQ DCD001488TR Rotterdam Genomics core, Erasmus MC Illumina GAIIx 36 03/01/2010
DCD001173DT: FASTQ
DCD006690DT: LOG GRCz10/danRer10
DCD006691DT: BAM GRCz10/danRer10
DCD006692DT: LOG GRCz10/danRer10
DCD006693DT: BAM GRCz10/danRer10
DCD006694DT: BAM GRCz10/danRer10
DCD006695DT: LOG GRCz10/danRer10
DCD006697DT: LOG GRCz10/danRer10
DCD006698DT: PDF GRCz10/danRer10
DCD006699DT: LOG GRCz10/danRer10
DCD006701DT: BAM GRCz10/danRer10
DCD006706DT: BAM GRCz10/danRer10
DCD008959DT: BIGNARROWPEAK GRCz10/danRer10
DCD009067DT: BIGWIG GRCz10/danRer10
DCD016389DT: BIGNARROWPEAK GRCz11/danRer11
DCD016390DT: BED GRCz11/danRer11
DCD016392DT: BAM GRCz11/danRer11
DCD016393DT: BIGNARROWPEAK GRCz11/danRer11
DCD016394DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001458AA DCD012947BR ChIP-seq_Mueller_lab_Mock_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001542SQ DCD001460TR Rotterdam Genomics core, Erasmus MC Illumina GAIIx 36 03/01/2010
DCD001171DT: FASTQ
DCD006673DT: LOG GRCz10/danRer10
DCD006675DT: BAM GRCz10/danRer10
DCD006676DT: LOG GRCz10/danRer10
DCD006677DT: BAM GRCz10/danRer10
DCD006678DT: BAM GRCz10/danRer10
DCD006679DT: LOG GRCz10/danRer10
DCD006680DT: LOG GRCz10/danRer10
DCD006681DT: LOG GRCz10/danRer10
DCD006682DT: PDF GRCz10/danRer10
DCD006754DT: BAM GRCz10/danRer10
DCD006755DT: BAM GRCz10/danRer10
DCD017000DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001463AA DCD012954BR ChIP-seq_Mueller_lab_H3K4me3_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001525SQ DCD001477TR Rotterdam Genomics core, Erasmus MC Illumina GAIIx 36 06/27/2011
DCD001172DT: FASTQ
DCD006683DT: LOG GRCz10/danRer10
DCD006684DT: LOG GRCz10/danRer10
DCD006685DT: LOG GRCz10/danRer10
DCD006686DT: BAM GRCz10/danRer10
DCD006687DT: LOG GRCz10/danRer10
DCD006688DT: PDF GRCz10/danRer10
DCD006689DT: LOG GRCz10/danRer10
DCD006696DT: BAM GRCz10/danRer10
DCD006702DT: BAM GRCz10/danRer10
DCD006705DT: BAM GRCz10/danRer10
DCD006760DT: BAM GRCz10/danRer10
DCD008957DT: BIGNARROWPEAK GRCz10/danRer10
DCD009064DT: BIGWIG GRCz10/danRer10
DCD016395DT: BAM GRCz11/danRer11
DCD016396DT: BIGNARROWPEAK GRCz11/danRer11
DCD016397DT: BED GRCz11/danRer11
DCD016398DT: BIGNARROWPEAK GRCz11/danRer11
DCD016400DT: BIGWIG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006677BS DCD000243SR whole organism Mueller lab, University of Birmingham AB 512-cell 2.75
Applied Assay ID Biosample Replicate Assay
DCD001461AA DCD012962BR ChIP-seq_Mueller_lab_H3K4me3_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Maximum Read Length Sequencing Date
DCD001529SQ DCD001484TR Rotterdam Genomics core, Erasmus MC Illumina GAIIx 36 06/17/2011
DCD001178DT: FASTQ
DCD006738DT: LOG GRCz10/danRer10
DCD006741DT: LOG GRCz10/danRer10
DCD006742DT: BAM GRCz10/danRer10
DCD006744DT: LOG GRCz10/danRer10
DCD006745DT: LOG GRCz10/danRer10
DCD006747DT: PDF GRCz10/danRer10
DCD006748DT: LOG GRCz10/danRer10
DCD006749DT: BAM GRCz10/danRer10
DCD006750DT: BAM GRCz10/danRer10
DCD006751DT: BAM GRCz10/danRer10
DCD006753DT: BAM GRCz10/danRer10
DCD008958DT: BIGNARROWPEAK GRCz10/danRer10
DCD009065DT: BIGWIG GRCz10/danRer10
DCD016324DT: BIGNARROWPEAK GRCz11/danRer11
DCD016325DT: BIGNARROWPEAK GRCz11/danRer11
DCD016326DT: BED GRCz11/danRer11
DCD016328DT: BAM GRCz11/danRer11
DCD016329DT: BIGWIG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006678BS DCD000243SR whole organism Mueller lab, University of Birmingham AB Oblong 3.7
Applied Assay ID Biosample Replicate Assay
DCD001460AA DCD012941BR ChIP-seq_Mueller_lab_H3K4me3_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Paired End Maximum Read Length Sequencing Date
DCD001524SQ DCD001485TR Rotterdam Genomics core, Erasmus MC Illumina GAIIx 36 06/17/2011
DCD001177DT: FASTQ
DCD006728DT: LOG GRCz10/danRer10
DCD006730DT: LOG GRCz10/danRer10
DCD006731DT: BAM GRCz10/danRer10
DCD006733DT: LOG GRCz10/danRer10
DCD006734DT: LOG GRCz10/danRer10
DCD006736DT: PDF GRCz10/danRer10
DCD006737DT: LOG GRCz10/danRer10
DCD006740DT: BAM GRCz10/danRer10
DCD006743DT: BAM GRCz10/danRer10
DCD006746DT: BAM GRCz10/danRer10
DCD006752DT: BAM GRCz10/danRer10
DCD008956DT: BIGNARROWPEAK GRCz10/danRer10
DCD009061DT: BIGWIG GRCz10/danRer10
DCD016355DT: BED GRCz11/danRer11
DCD016356DT: BAM GRCz11/danRer11
DCD016357DT: BIGNARROWPEAK GRCz11/danRer11
DCD016358DT: BIGNARROWPEAK GRCz11/danRer11
DCD016361DT: BIGWIG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By Anatomical Term Treatment Hours Post Fertilization Mutation Description
DCD006700BS DCD000243SR whole organism Mueller lab, University of Birmingham AB 14-19 somites 17
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001439AA DCD012951BR RNA-seq_Mueller_lab_0006AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001535SQ DCD001471TR Barts and The London Genome Center, Queen Mary University of London Illumina GAIIx 76 11/01/2009
DCD001180DT: FASTQ
DCD004125DT: LOG GRCz10/danRer10
DCD004126DT: TSV GRCz10/danRer10
DCD004128DT: BEDGRAPH GRCz10/danRer10
DCD004130DT: BEDGRAPH GRCz10/danRer10
DCD004131DT: PDF GRCz10/danRer10
DCD004132DT: BEDGRAPH GRCz10/danRer10
DCD004133DT: BEDGRAPH GRCz10/danRer10
DCD004134DT: LOG GRCz10/danRer10
DCD004135DT: PDF GRCz10/danRer10
DCD004136DT: LOG GRCz10/danRer10
DCD004141DT: BEDGRAPH GRCz10/danRer10
DCD004194DT: BAM GRCz10/danRer10
DCD008679DT: BIGWIG GRCz10/danRer10
DCD013380DT: LOG GRCz11/danRer11
DCD013382DT: TSV GRCz11/danRer11
DCD013383DT: TSV GRCz11/danRer11
DCD013384DT: BIGWIG GRCz11/danRer11
DCD013385DT: PDF GRCz11/danRer11
DCD013386DT: BEDGRAPH GRCz11/danRer11
DCD013387DT: BEDGRAPH GRCz11/danRer11
DCD013388DT: LOG GRCz11/danRer11
DCD013389DT: PDF GRCz11/danRer11
DCD013390DT: LOG GRCz11/danRer11
DCD013408DT: BAM GRCz11/danRer11