Series Summary for DCD000247SR

Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells

Case Control

10.1186/s13059-015-0825-8

GSE74202

A functional study using mRNA-seq to understand the mechanism underlying myopathy phenotype under unc45b and Hsp90 mutation

True

vgourain

Sept. 19, 2016, 6:07 a.m.

Oct. 22, 2018, 6:22 p.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006708BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB Day 5 120
Applied Assay ID Biosample Replicate Assay
DCD001469AA DCD012967BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001561SQ DCD001501TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001205DT: FASTQ
DCD003272DT: LOG GRCz10/danRer10
DCD003273DT: TSV GRCz10/danRer10
DCD003274DT: BEDGRAPH GRCz10/danRer10
DCD003276DT: BEDGRAPH GRCz10/danRer10
DCD003277DT: BEDGRAPH GRCz10/danRer10
DCD003279DT: PDF GRCz10/danRer10
DCD003280DT: LOG GRCz10/danRer10
DCD003281DT: PDF GRCz10/danRer10
DCD003282DT: BEDGRAPH GRCz10/danRer10
DCD003283DT: LOG GRCz10/danRer10
DCD003287DT: BEDGRAPH GRCz10/danRer10
DCD003312DT: BAM GRCz10/danRer10
DCD008504DT: BIGWIG GRCz10/danRer10
DCD008507DT: BIGWIG GRCz10/danRer10
DCD014234DT: LOG GRCz11/danRer11
DCD014235DT: TSV GRCz11/danRer11
DCD014236DT: TSV GRCz11/danRer11
DCD014238DT: BEDGRAPH GRCz11/danRer11
DCD014239DT: BEDGRAPH GRCz11/danRer11
DCD014240DT: BEDGRAPH GRCz11/danRer11
DCD014241DT: BIGWIG GRCz11/danRer11
DCD014242DT: BAM GRCz11/danRer11
DCD014243DT: BIGWIG GRCz11/danRer11
DCD014244DT: LOG GRCz11/danRer11
DCD014245DT: LOG GRCz11/danRer11
DCD014246DT: PDF GRCz11/danRer11
DCD014247DT: PDF GRCz11/danRer11
DCD014248DT: BEDGRAPH GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001470AA DCD012969BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001549SQ DCD001499TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001204DT: FASTQ
DCD003596DT: LOG GRCz10/danRer10
DCD003597DT: TSV GRCz10/danRer10
DCD003598DT: BEDGRAPH GRCz10/danRer10
DCD003600DT: BEDGRAPH GRCz10/danRer10
DCD003602DT: BEDGRAPH GRCz10/danRer10
DCD003603DT: PDF GRCz10/danRer10
DCD003604DT: LOG GRCz10/danRer10
DCD003605DT: PDF GRCz10/danRer10
DCD003606DT: BEDGRAPH GRCz10/danRer10
DCD003607DT: LOG GRCz10/danRer10
DCD003611DT: BEDGRAPH GRCz10/danRer10
DCD003645DT: BAM GRCz10/danRer10
DCD008482DT: BIGWIG GRCz10/danRer10
DCD008485DT: BIGWIG GRCz10/danRer10
DCD014084DT: LOG GRCz11/danRer11
DCD014085DT: TSV GRCz11/danRer11
DCD014086DT: TSV GRCz11/danRer11
DCD014087DT: BEDGRAPH GRCz11/danRer11
DCD014088DT: BEDGRAPH GRCz11/danRer11
DCD014089DT: BEDGRAPH GRCz11/danRer11
DCD014090DT: BIGWIG GRCz11/danRer11
DCD014091DT: BIGWIG GRCz11/danRer11
DCD014093DT: BEDGRAPH GRCz11/danRer11
DCD014094DT: LOG GRCz11/danRer11
DCD014095DT: PDF GRCz11/danRer11
DCD014096DT: PDF GRCz11/danRer11
DCD014097DT: LOG GRCz11/danRer11
DCD014103DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001472AA DCD012978BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001550SQ DCD001503TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001206DT: FASTQ
DCD004016DT: LOG GRCz10/danRer10
DCD004017DT: TSV GRCz10/danRer10
DCD004019DT: BEDGRAPH GRCz10/danRer10
DCD004021DT: BEDGRAPH GRCz10/danRer10
DCD004022DT: BEDGRAPH GRCz10/danRer10
DCD004023DT: BEDGRAPH GRCz10/danRer10
DCD004024DT: LOG GRCz10/danRer10
DCD004025DT: PDF GRCz10/danRer10
DCD004026DT: LOG GRCz10/danRer10
DCD004027DT: PDF GRCz10/danRer10
DCD004031DT: BEDGRAPH GRCz10/danRer10
DCD004046DT: BAM GRCz10/danRer10
DCD008508DT: BIGWIG GRCz10/danRer10
DCD008509DT: BIGWIG GRCz10/danRer10
DCD014098DT: LOG GRCz11/danRer11
DCD014099DT: TSV GRCz11/danRer11
DCD014100DT: TSV GRCz11/danRer11
DCD014101DT: BEDGRAPH GRCz11/danRer11
DCD014102DT: BEDGRAPH GRCz11/danRer11
DCD014104DT: BEDGRAPH GRCz11/danRer11
DCD014106DT: BAM GRCz11/danRer11
DCD014107DT: BIGWIG GRCz11/danRer11
DCD014108DT: BIGWIG GRCz11/danRer11
DCD014109DT: PDF GRCz11/danRer11
DCD014110DT: LOG GRCz11/danRer11
DCD014111DT: PDF GRCz11/danRer11
DCD014112DT: BEDGRAPH GRCz11/danRer11
DCD014113DT: LOG GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006709BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB Day 5 120
Applied Assay ID Biosample Replicate Assay
DCD001468AA DCD012979BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001553SQ DCD001497TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001202DT: FASTQ
DCD003776DT: LOG GRCz10/danRer10
DCD003777DT: TSV GRCz10/danRer10
DCD003778DT: BEDGRAPH GRCz10/danRer10
DCD003781DT: BEDGRAPH GRCz10/danRer10
DCD003782DT: BEDGRAPH GRCz10/danRer10
DCD003783DT: PDF GRCz10/danRer10
DCD003784DT: BEDGRAPH GRCz10/danRer10
DCD003785DT: LOG GRCz10/danRer10
DCD003786DT: PDF GRCz10/danRer10
DCD003787DT: LOG GRCz10/danRer10
DCD003791DT: BEDGRAPH GRCz10/danRer10
DCD003804DT: BAM GRCz10/danRer10
DCD008488DT: BIGWIG GRCz10/danRer10
DCD008489DT: BIGWIG GRCz10/danRer10
DCD014139DT: LOG GRCz11/danRer11
DCD014140DT: TSV GRCz11/danRer11
DCD014141DT: TSV GRCz11/danRer11
DCD014142DT: BEDGRAPH GRCz11/danRer11
DCD014143DT: BEDGRAPH GRCz11/danRer11
DCD014144DT: BIGWIG GRCz11/danRer11
DCD014145DT: BEDGRAPH GRCz11/danRer11
DCD014146DT: PDF GRCz11/danRer11
DCD014147DT: BEDGRAPH GRCz11/danRer11
DCD014148DT: BIGWIG GRCz11/danRer11
DCD014149DT: LOG GRCz11/danRer11
DCD014150DT: LOG GRCz11/danRer11
DCD014151DT: PDF GRCz11/danRer11
DCD014153DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001467AA DCD012980BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001557SQ DCD001508TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001203DT: FASTQ
DCD003176DT: LOG GRCz10/danRer10
DCD003177DT: TSV GRCz10/danRer10
DCD003178DT: BEDGRAPH GRCz10/danRer10
DCD003179DT: BEDGRAPH GRCz10/danRer10
DCD003182DT: BEDGRAPH GRCz10/danRer10
DCD003183DT: PDF GRCz10/danRer10
DCD003184DT: BEDGRAPH GRCz10/danRer10
DCD003185DT: LOG GRCz10/danRer10
DCD003186DT: LOG GRCz10/danRer10
DCD003187DT: PDF GRCz10/danRer10
DCD003192DT: BEDGRAPH GRCz10/danRer10
DCD003228DT: BAM GRCz10/danRer10
DCD008497DT: BIGWIG GRCz10/danRer10
DCD008499DT: BIGWIG GRCz10/danRer10
DCD014186DT: LOG GRCz11/danRer11
DCD014189DT: TSV GRCz11/danRer11
DCD014191DT: TSV GRCz11/danRer11
DCD014192DT: BEDGRAPH GRCz11/danRer11
DCD014193DT: BEDGRAPH GRCz11/danRer11
DCD014194DT: BIGWIG GRCz11/danRer11
DCD014195DT: BEDGRAPH GRCz11/danRer11
DCD014196DT: BEDGRAPH GRCz11/danRer11
DCD014197DT: PDF GRCz11/danRer11
DCD014198DT: BIGWIG GRCz11/danRer11
DCD014199DT: LOG GRCz11/danRer11
DCD014200DT: PDF GRCz11/danRer11
DCD014201DT: LOG GRCz11/danRer11
DCD014203DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006710BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB Protruding-mouth 72
Applied Assay ID Biosample Replicate Assay
DCD001473AA DCD012983BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001551SQ DCD001504TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 11/18/2013
DCD001209DT: FASTQ
DCD003477DT: LOG GRCz10/danRer10
DCD003478DT: TSV GRCz10/danRer10
DCD003479DT: BEDGRAPH GRCz10/danRer10
DCD003480DT: BEDGRAPH GRCz10/danRer10
DCD003481DT: BEDGRAPH GRCz10/danRer10
DCD003483DT: PDF GRCz10/danRer10
DCD003484DT: LOG GRCz10/danRer10
DCD003485DT: PDF GRCz10/danRer10
DCD003486DT: LOG GRCz10/danRer10
DCD003487DT: BEDGRAPH GRCz10/danRer10
DCD003491DT: BEDGRAPH GRCz10/danRer10
DCD003525DT: BAM GRCz10/danRer10
DCD008695DT: BIGWIG GRCz10/danRer10
DCD014114DT: LOG GRCz11/danRer11
DCD014115DT: TSV GRCz11/danRer11
DCD014116DT: TSV GRCz11/danRer11
DCD014117DT: LOG GRCz11/danRer11
DCD014118DT: PDF GRCz11/danRer11
DCD014119DT: BIGWIG GRCz11/danRer11
DCD014120DT: BEDGRAPH GRCz11/danRer11
DCD014121DT: BEDGRAPH GRCz11/danRer11
DCD014122DT: LOG GRCz11/danRer11
DCD014123DT: PDF GRCz11/danRer11
DCD014127DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001476AA DCD012984BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001565SQ DCD001493TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 11/18/2013
DCD001210DT: FASTQ
DCD003560DT: LOG GRCz10/danRer10
DCD003561DT: TSV GRCz10/danRer10
DCD003562DT: BEDGRAPH GRCz10/danRer10
DCD003565DT: BEDGRAPH GRCz10/danRer10
DCD003566DT: BEDGRAPH GRCz10/danRer10
DCD003567DT: PDF GRCz10/danRer10
DCD003568DT: LOG GRCz10/danRer10
DCD003569DT: PDF GRCz10/danRer10
DCD003570DT: LOG GRCz10/danRer10
DCD003571DT: BEDGRAPH GRCz10/danRer10
DCD003575DT: BEDGRAPH GRCz10/danRer10
DCD003599DT: BAM GRCz10/danRer10
DCD008692DT: BIGWIG GRCz10/danRer10
DCD014286DT: LOG GRCz11/danRer11
DCD014289DT: TSV GRCz11/danRer11
DCD014290DT: TSV GRCz11/danRer11
DCD014291DT: PDF GRCz11/danRer11
DCD014292DT: BIGWIG GRCz11/danRer11
DCD014293DT: BEDGRAPH GRCz11/danRer11
DCD014294DT: BEDGRAPH GRCz11/danRer11
DCD014295DT: LOG GRCz11/danRer11
DCD014296DT: PDF GRCz11/danRer11
DCD014297DT: LOG GRCz11/danRer11
DCD014301DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006711BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB Day 5 120
Applied Assay ID Biosample Replicate Assay
DCD001471AA DCD012981BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001556SQ DCD001505TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001207DT: FASTQ
DCD003585DT: LOG GRCz10/danRer10
DCD003586DT: TSV GRCz10/danRer10
DCD003587DT: BEDGRAPH GRCz10/danRer10
DCD003588DT: BEDGRAPH GRCz10/danRer10
DCD003589DT: BEDGRAPH GRCz10/danRer10
DCD003590DT: BEDGRAPH GRCz10/danRer10
DCD003591DT: PDF GRCz10/danRer10
DCD003592DT: LOG GRCz10/danRer10
DCD003593DT: PDF GRCz10/danRer10
DCD003594DT: BEDGRAPH GRCz10/danRer10
DCD003595DT: LOG GRCz10/danRer10
DCD003619DT: BAM GRCz10/danRer10
DCD008491DT: BIGWIG GRCz10/danRer10
DCD008492DT: BIGWIG GRCz10/danRer10
DCD014172DT: LOG GRCz11/danRer11
DCD014175DT: TSV GRCz11/danRer11
DCD014176DT: TSV GRCz11/danRer11
DCD014178DT: BEDGRAPH GRCz11/danRer11
DCD014179DT: BEDGRAPH GRCz11/danRer11
DCD014180DT: BEDGRAPH GRCz11/danRer11
DCD014181DT: LOG GRCz11/danRer11
DCD014182DT: PDF GRCz11/danRer11
DCD014183DT: BIGWIG GRCz11/danRer11
DCD014184DT: BIGWIG GRCz11/danRer11
DCD014185DT: BEDGRAPH GRCz11/danRer11
DCD014187DT: LOG GRCz11/danRer11
DCD014188DT: PDF GRCz11/danRer11
DCD014190DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001474AA DCD012982BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001552SQ DCD001507TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001208DT: FASTQ
DCD003224DT: LOG GRCz10/danRer10
DCD003225DT: TSV GRCz10/danRer10
DCD003226DT: BEDGRAPH GRCz10/danRer10
DCD003229DT: BEDGRAPH GRCz10/danRer10
DCD003231DT: PDF GRCz10/danRer10
DCD003232DT: LOG GRCz10/danRer10
DCD003233DT: BEDGRAPH GRCz10/danRer10
DCD003234DT: PDF GRCz10/danRer10
DCD003235DT: LOG GRCz10/danRer10
DCD003237DT: BEDGRAPH GRCz10/danRer10
DCD003240DT: BEDGRAPH GRCz10/danRer10
DCD003278DT: BAM GRCz10/danRer10
DCD008505DT: BIGWIG GRCz10/danRer10
DCD008506DT: BIGWIG GRCz10/danRer10
DCD014124DT: LOG GRCz11/danRer11
DCD014125DT: TSV GRCz11/danRer11
DCD014126DT: TSV GRCz11/danRer11
DCD014128DT: BEDGRAPH GRCz11/danRer11
DCD014129DT: BIGWIG GRCz11/danRer11
DCD014130DT: BIGWIG GRCz11/danRer11
DCD014131DT: BEDGRAPH GRCz11/danRer11
DCD014132DT: BEDGRAPH GRCz11/danRer11
DCD014133DT: BEDGRAPH GRCz11/danRer11
DCD014134DT: LOG GRCz11/danRer11
DCD014135DT: LOG GRCz11/danRer11
DCD014136DT: PDF GRCz11/danRer11
DCD014137DT: PDF GRCz11/danRer11
DCD014138DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006712BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB 20-25 somites 24
Applied Assay ID Biosample Replicate Assay
DCD001480AA DCD012974BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001554SQ DCD001498TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 01/09/2013
DCD001214DT: FASTQ
DCD001867DT: LOG GRCz10/danRer10
DCD001868DT: TSV GRCz10/danRer10
DCD001869DT: BEDGRAPH GRCz10/danRer10
DCD001870DT: BEDGRAPH GRCz10/danRer10
DCD001872DT: BEDGRAPH GRCz10/danRer10
DCD001873DT: BEDGRAPH GRCz10/danRer10
DCD001874DT: PDF GRCz10/danRer10
DCD001875DT: LOG GRCz10/danRer10
DCD001876DT: PDF GRCz10/danRer10
DCD001877DT: LOG GRCz10/danRer10
DCD001878DT: BEDGRAPH GRCz10/danRer10
DCD001902DT: BAM GRCz10/danRer10
DCD008710DT: BIGWIG GRCz10/danRer10
DCD014152DT: LOG GRCz11/danRer11
DCD014154DT: TSV GRCz11/danRer11
DCD014155DT: TSV GRCz11/danRer11
DCD014156DT: BIGWIG GRCz11/danRer11
DCD014157DT: LOG GRCz11/danRer11
DCD014158DT: PDF GRCz11/danRer11
DCD014159DT: PDF GRCz11/danRer11
DCD014160DT: BEDGRAPH GRCz11/danRer11
DCD014161DT: BEDGRAPH GRCz11/danRer11
DCD014162DT: LOG GRCz11/danRer11
DCD014170DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001477AA DCD012975BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001560SQ DCD001509TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 01/09/2013
DCD001213DT: FASTQ
DCD001939DT: LOG GRCz10/danRer10
DCD001940DT: TSV GRCz10/danRer10
DCD001941DT: BEDGRAPH GRCz10/danRer10
DCD001942DT: BEDGRAPH GRCz10/danRer10
DCD001943DT: BEDGRAPH GRCz10/danRer10
DCD001944DT: BEDGRAPH GRCz10/danRer10
DCD001946DT: PDF GRCz10/danRer10
DCD001947DT: LOG GRCz10/danRer10
DCD001948DT: PDF GRCz10/danRer10
DCD001949DT: LOG GRCz10/danRer10
DCD001950DT: BEDGRAPH GRCz10/danRer10
DCD001992DT: BAM GRCz10/danRer10
DCD008706DT: BIGWIG GRCz10/danRer10
DCD014224DT: LOG GRCz11/danRer11
DCD014225DT: TSV GRCz11/danRer11
DCD014226DT: TSV GRCz11/danRer11
DCD014227DT: BEDGRAPH GRCz11/danRer11
DCD014228DT: PDF GRCz11/danRer11
DCD014229DT: BIGWIG GRCz11/danRer11
DCD014230DT: BEDGRAPH GRCz11/danRer11
DCD014231DT: LOG GRCz11/danRer11
DCD014232DT: PDF GRCz11/danRer11
DCD014233DT: LOG GRCz11/danRer11
DCD014265DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006713BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB Long-pec 48
Applied Assay ID Biosample Replicate Assay
DCD001478AA DCD012963BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001555SQ DCD001510TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 11/18/2013
DCD001212DT: FASTQ
DCD003572DT: LOG GRCz10/danRer10
DCD003573DT: TSV GRCz10/danRer10
DCD003574DT: BEDGRAPH GRCz10/danRer10
DCD003576DT: BEDGRAPH GRCz10/danRer10
DCD003577DT: BEDGRAPH GRCz10/danRer10
DCD003578DT: BEDGRAPH GRCz10/danRer10
DCD003580DT: PDF GRCz10/danRer10
DCD003581DT: LOG GRCz10/danRer10
DCD003582DT: PDF GRCz10/danRer10
DCD003583DT: LOG GRCz10/danRer10
DCD003584DT: BEDGRAPH GRCz10/danRer10
DCD003625DT: BAM GRCz10/danRer10
DCD008693DT: BIGWIG GRCz10/danRer10
DCD014163DT: LOG GRCz11/danRer11
DCD014164DT: TSV GRCz11/danRer11
DCD014165DT: TSV GRCz11/danRer11
DCD014166DT: BIGWIG GRCz11/danRer11
DCD014167DT: BEDGRAPH GRCz11/danRer11
DCD014168DT: BEDGRAPH GRCz11/danRer11
DCD014169DT: LOG GRCz11/danRer11
DCD014171DT: PDF GRCz11/danRer11
DCD014173DT: LOG GRCz11/danRer11
DCD014174DT: PDF GRCz11/danRer11
DCD014177DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001475AA DCD012971BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001564SQ DCD001496TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 11/18/2013
DCD001211DT: FASTQ
DCD003404DT: LOG GRCz10/danRer10
DCD003405DT: TSV GRCz10/danRer10
DCD003406DT: BEDGRAPH GRCz10/danRer10
DCD003409DT: BEDGRAPH GRCz10/danRer10
DCD003410DT: BEDGRAPH GRCz10/danRer10
DCD003411DT: PDF GRCz10/danRer10
DCD003412DT: LOG GRCz10/danRer10
DCD003413DT: PDF GRCz10/danRer10
DCD003414DT: LOG GRCz10/danRer10
DCD003415DT: BEDGRAPH GRCz10/danRer10
DCD003419DT: BEDGRAPH GRCz10/danRer10
DCD003472DT: BAM GRCz10/danRer10
DCD008700DT: BIGWIG GRCz10/danRer10
DCD014278DT: LOG GRCz11/danRer11
DCD014279DT: TSV GRCz11/danRer11
DCD014280DT: TSV GRCz11/danRer11
DCD014281DT: LOG GRCz11/danRer11
DCD014282DT: PDF GRCz11/danRer11
DCD014283DT: BIGWIG GRCz11/danRer11
DCD014284DT: BEDGRAPH GRCz11/danRer11
DCD014285DT: LOG GRCz11/danRer11
DCD014287DT: PDF GRCz11/danRer11
DCD014288DT: BEDGRAPH GRCz11/danRer11
DCD014303DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006714BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB Long-pec 48
Applied Assay ID Biosample Replicate Assay
DCD001484AA DCD012972BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001558SQ DCD001490TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 11/18/2013
DCD001218DT: FASTQ
DCD003728DT: LOG GRCz10/danRer10
DCD003729DT: TSV GRCz10/danRer10
DCD003730DT: BEDGRAPH GRCz10/danRer10
DCD003733DT: BEDGRAPH GRCz10/danRer10
DCD003734DT: BEDGRAPH GRCz10/danRer10
DCD003735DT: PDF GRCz10/danRer10
DCD003736DT: LOG GRCz10/danRer10
DCD003737DT: PDF GRCz10/danRer10
DCD003738DT: LOG GRCz10/danRer10
DCD003739DT: BEDGRAPH GRCz10/danRer10
DCD003743DT: BEDGRAPH GRCz10/danRer10
DCD003780DT: BAM GRCz10/danRer10
DCD008689DT: BIGWIG GRCz10/danRer10
DCD014202DT: LOG GRCz11/danRer11
DCD014204DT: TSV GRCz11/danRer11
DCD014205DT: TSV GRCz11/danRer11
DCD014206DT: BEDGRAPH GRCz11/danRer11
DCD014207DT: BEDGRAPH GRCz11/danRer11
DCD014208DT: BAM GRCz11/danRer11
DCD014209DT: BIGWIG GRCz11/danRer11
DCD014210DT: LOG GRCz11/danRer11
DCD014211DT: PDF GRCz11/danRer11
DCD014212DT: LOG GRCz11/danRer11
DCD014213DT: PDF GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001481AA DCD012973BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001546SQ DCD001491TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 11/18/2013
DCD001217DT: FASTQ
DCD003717DT: LOG GRCz10/danRer10
DCD003718DT: TSV GRCz10/danRer10
DCD003719DT: BEDGRAPH GRCz10/danRer10
DCD003721DT: BEDGRAPH GRCz10/danRer10
DCD003722DT: BEDGRAPH GRCz10/danRer10
DCD003723DT: PDF GRCz10/danRer10
DCD003724DT: LOG GRCz10/danRer10
DCD003725DT: PDF GRCz10/danRer10
DCD003726DT: LOG GRCz10/danRer10
DCD003727DT: BEDGRAPH GRCz10/danRer10
DCD003731DT: BEDGRAPH GRCz10/danRer10
DCD003758DT: BAM GRCz10/danRer10
DCD008691DT: BIGWIG GRCz10/danRer10
DCD014049DT: LOG GRCz11/danRer11
DCD014051DT: TSV GRCz11/danRer11
DCD014052DT: TSV GRCz11/danRer11
DCD014053DT: BEDGRAPH GRCz11/danRer11
DCD014054DT: BEDGRAPH GRCz11/danRer11
DCD014056DT: PDF GRCz11/danRer11
DCD014057DT: BIGWIG GRCz11/danRer11
DCD014058DT: LOG GRCz11/danRer11
DCD014059DT: LOG GRCz11/danRer11
DCD014060DT: PDF GRCz11/danRer11
DCD014061DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006715BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB Protruding-mouth 72
Applied Assay ID Biosample Replicate Assay
DCD001479AA DCD012976BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001545SQ DCD001495TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 11/18/2013
DCD001215DT: FASTQ
DCD002048DT: LOG GRCz10/danRer10
DCD002049DT: TSV GRCz10/danRer10
DCD002050DT: BEDGRAPH GRCz10/danRer10
DCD002053DT: BEDGRAPH GRCz10/danRer10
DCD002054DT: PDF GRCz10/danRer10
DCD002055DT: LOG GRCz10/danRer10
DCD002056DT: PDF GRCz10/danRer10
DCD002057DT: BEDGRAPH GRCz10/danRer10
DCD002058DT: LOG GRCz10/danRer10
DCD002062DT: BEDGRAPH GRCz10/danRer10
DCD002068DT: BEDGRAPH GRCz10/danRer10
DCD002140DT: BAM GRCz10/danRer10
DCD008705DT: BIGWIG GRCz10/danRer10
DCD014038DT: LOG GRCz11/danRer11
DCD014039DT: TSV GRCz11/danRer11
DCD014041DT: TSV GRCz11/danRer11
DCD014043DT: BIGWIG GRCz11/danRer11
DCD014044DT: BEDGRAPH GRCz11/danRer11
DCD014045DT: PDF GRCz11/danRer11
DCD014046DT: BEDGRAPH GRCz11/danRer11
DCD014047DT: PDF GRCz11/danRer11
DCD014048DT: LOG GRCz11/danRer11
DCD014050DT: LOG GRCz11/danRer11
DCD014055DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001482AA DCD012977BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001547SQ DCD001492TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 11/18/2013
DCD001216DT: FASTQ
DCD003488DT: LOG GRCz10/danRer10
DCD003489DT: TSV GRCz10/danRer10
DCD003490DT: BEDGRAPH GRCz10/danRer10
DCD003493DT: BEDGRAPH GRCz10/danRer10
DCD003494DT: BEDGRAPH GRCz10/danRer10
DCD003495DT: PDF GRCz10/danRer10
DCD003496DT: LOG GRCz10/danRer10
DCD003497DT: PDF GRCz10/danRer10
DCD003498DT: LOG GRCz10/danRer10
DCD003499DT: BEDGRAPH GRCz10/danRer10
DCD003503DT: BEDGRAPH GRCz10/danRer10
DCD003540DT: BAM GRCz10/danRer10
DCD008687DT: BIGWIG GRCz10/danRer10
DCD014062DT: LOG GRCz11/danRer11
DCD014063DT: TSV GRCz11/danRer11
DCD014064DT: TSV GRCz11/danRer11
DCD014065DT: BIGWIG GRCz11/danRer11
DCD014066DT: BEDGRAPH GRCz11/danRer11
DCD014067DT: BEDGRAPH GRCz11/danRer11
DCD014069DT: BAM GRCz11/danRer11
DCD014070DT: PDF GRCz11/danRer11
DCD014071DT: LOG GRCz11/danRer11
DCD014072DT: LOG GRCz11/danRer11
DCD014073DT: PDF GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD006716BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB 20-25 somites 24
Applied Assay ID Biosample Replicate Assay
DCD001485AA DCD012968BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001559SQ DCD001494TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 01/09/2013
DCD001220DT: FASTQ
DCD001915DT: LOG GRCz10/danRer10
DCD001916DT: TSV GRCz10/danRer10
DCD001917DT: BEDGRAPH GRCz10/danRer10
DCD001920DT: BEDGRAPH GRCz10/danRer10
DCD001921DT: BEDGRAPH GRCz10/danRer10
DCD001922DT: BEDGRAPH GRCz10/danRer10
DCD001923DT: LOG GRCz10/danRer10
DCD001924DT: PDF GRCz10/danRer10
DCD001925DT: LOG GRCz10/danRer10
DCD001926DT: PDF GRCz10/danRer10
DCD001930DT: BEDGRAPH GRCz10/danRer10
DCD001964DT: BAM GRCz10/danRer10
DCD008703DT: BIGWIG GRCz10/danRer10
DCD014214DT: LOG GRCz11/danRer11
DCD014215DT: TSV GRCz11/danRer11
DCD014216DT: TSV GRCz11/danRer11
DCD014217DT: BIGWIG GRCz11/danRer11
DCD014218DT: PDF GRCz11/danRer11
DCD014219DT: LOG GRCz11/danRer11
DCD014220DT: BEDGRAPH GRCz11/danRer11
DCD014221DT: BEDGRAPH GRCz11/danRer11
DCD014222DT: LOG GRCz11/danRer11
DCD014223DT: PDF GRCz11/danRer11
DCD014237DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001483AA DCD012970BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001548SQ DCD001489TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 01/09/2013
DCD001219DT: FASTQ
DCD001762DT: LOG GRCz10/danRer10
DCD001763DT: TSV GRCz10/danRer10
DCD001764DT: BEDGRAPH GRCz10/danRer10
DCD001767DT: BEDGRAPH GRCz10/danRer10
DCD001768DT: BEDGRAPH GRCz10/danRer10
DCD001769DT: PDF GRCz10/danRer10
DCD001770DT: LOG GRCz10/danRer10
DCD001771DT: PDF GRCz10/danRer10
DCD001772DT: LOG GRCz10/danRer10
DCD001773DT: BEDGRAPH GRCz10/danRer10
DCD001778DT: BEDGRAPH GRCz10/danRer10
DCD007839DT: BAM GRCz10/danRer10
DCD008717DT: BIGWIG GRCz10/danRer10
DCD014074DT: LOG GRCz11/danRer11
DCD014075DT: TSV GRCz11/danRer11
DCD014076DT: TSV GRCz11/danRer11
DCD014077DT: PDF GRCz11/danRer11
DCD014078DT: BEDGRAPH GRCz11/danRer11
DCD014079DT: BIGWIG GRCz11/danRer11
DCD014080DT: LOG GRCz11/danRer11
DCD014081DT: LOG GRCz11/danRer11
DCD014082DT: PDF GRCz11/danRer11
DCD014083DT: BEDGRAPH GRCz11/danRer11
DCD014105DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD006717BS DCD000247SR whole organism Strahle Lab, Karlsruhe Institute of Technology AB Day 5 120
Applied Assay ID Biosample Replicate Assay
DCD001486AA DCD012964BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001562SQ DCD001500TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001199DT: FASTQ
DCD004005DT: LOG GRCz10/danRer10
DCD004006DT: TSV GRCz10/danRer10
DCD004008DT: BEDGRAPH GRCz10/danRer10
DCD004009DT: BEDGRAPH GRCz10/danRer10
DCD004010DT: BEDGRAPH GRCz10/danRer10
DCD004011DT: BEDGRAPH GRCz10/danRer10
DCD004012DT: PDF GRCz10/danRer10
DCD004013DT: LOG GRCz10/danRer10
DCD004014DT: PDF GRCz10/danRer10
DCD004015DT: LOG GRCz10/danRer10
DCD004020DT: BEDGRAPH GRCz10/danRer10
DCD004034DT: BAM GRCz10/danRer10
DCD008500DT: BIGWIG GRCz10/danRer10
DCD008501DT: BIGWIG GRCz10/danRer10
DCD014249DT: LOG GRCz11/danRer11
DCD014250DT: TSV GRCz11/danRer11
DCD014251DT: TSV GRCz11/danRer11
DCD014252DT: BEDGRAPH GRCz11/danRer11
DCD014253DT: BEDGRAPH GRCz11/danRer11
DCD014254DT: BEDGRAPH GRCz11/danRer11
DCD014255DT: BEDGRAPH GRCz11/danRer11
DCD014256DT: BIGWIG GRCz11/danRer11
DCD014257DT: PDF GRCz11/danRer11
DCD014258DT: BIGWIG GRCz11/danRer11
DCD014259DT: BAM GRCz11/danRer11
DCD014260DT: LOG GRCz11/danRer11
DCD014261DT: LOG GRCz11/danRer11
DCD014263DT: PDF GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD001487AA DCD012965BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001566SQ DCD001502TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001200DT: FASTQ
DCD003980DT: LOG GRCz10/danRer10
DCD003981DT: TSV GRCz10/danRer10
DCD003982DT: BEDGRAPH GRCz10/danRer10
DCD003984DT: BEDGRAPH GRCz10/danRer10
DCD003985DT: BEDGRAPH GRCz10/danRer10
DCD003986DT: BEDGRAPH GRCz10/danRer10
DCD003987DT: PDF GRCz10/danRer10
DCD003988DT: LOG GRCz10/danRer10
DCD003989DT: PDF GRCz10/danRer10
DCD003990DT: LOG GRCz10/danRer10
DCD003991DT: BEDGRAPH GRCz10/danRer10
DCD003998DT: BAM GRCz10/danRer10
DCD008512DT: BIGWIG GRCz10/danRer10
DCD008513DT: BIGWIG GRCz10/danRer10
DCD014298DT: LOG GRCz11/danRer11
DCD014299DT: TSV GRCz11/danRer11
DCD014300DT: TSV GRCz11/danRer11
DCD014302DT: BAM GRCz11/danRer11
DCD014304DT: BEDGRAPH GRCz11/danRer11
DCD014305DT: BEDGRAPH GRCz11/danRer11
DCD014306DT: BIGWIG GRCz11/danRer11
DCD014307DT: BEDGRAPH GRCz11/danRer11
DCD014308DT: BEDGRAPH GRCz11/danRer11
DCD014309DT: LOG GRCz11/danRer11
DCD014310DT: LOG GRCz11/danRer11
DCD014311DT: PDF GRCz11/danRer11
DCD014312DT: PDF GRCz11/danRer11
DCD014313DT: BIGWIG GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay Controlled By
DCD001488AA DCD012966BR RNA-seq_Strahle_Lab_0005AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD001563SQ DCD001506TR Strahle Lab, Karlsruhe Institute of Technology Illumina HiSeq 2000 V3 unstranded 50 04/01/2015
DCD001201DT: FASTQ
DCD003608DT: LOG GRCz10/danRer10
DCD003609DT: TSV GRCz10/danRer10
DCD003610DT: BEDGRAPH GRCz10/danRer10
DCD003612DT: BEDGRAPH GRCz10/danRer10
DCD003613DT: BEDGRAPH GRCz10/danRer10
DCD003614DT: BEDGRAPH GRCz10/danRer10
DCD003615DT: PDF GRCz10/danRer10
DCD003616DT: LOG GRCz10/danRer10
DCD003617DT: PDF GRCz10/danRer10
DCD003618DT: LOG GRCz10/danRer10
DCD003623DT: BEDGRAPH GRCz10/danRer10
DCD003660DT: BAM GRCz10/danRer10
DCD008495DT: BIGWIG GRCz10/danRer10
DCD008498DT: BIGWIG GRCz10/danRer10
DCD014262DT: LOG GRCz11/danRer11
DCD014264DT: TSV GRCz11/danRer11
DCD014266DT: TSV GRCz11/danRer11
DCD014267DT: BEDGRAPH GRCz11/danRer11
DCD014268DT: BEDGRAPH GRCz11/danRer11
DCD014269DT: BEDGRAPH GRCz11/danRer11
DCD014270DT: BEDGRAPH GRCz11/danRer11
DCD014271DT: BIGWIG GRCz11/danRer11
DCD014272DT: LOG GRCz11/danRer11
DCD014273DT: LOG GRCz11/danRer11
DCD014274DT: PDF GRCz11/danRer11
DCD014275DT: PDF GRCz11/danRer11
DCD014276DT: BIGWIG GRCz11/danRer11
DCD014277DT: BAM GRCz11/danRer11