Genome-wide DNA methylation map of Zebrafish liver, male brain and female brain (RRBS)
Survey
10.4161/epi.25797
GSE59916, GSE59917
Here we generated single-nucleotide resoultion DNA methylation map of 1) zebrafish pooled liver sample using Reduced Representation Bisulfite Sequencing (RRBS) (GSE59917) and of 2) 4 zebrafish brain samples using Reduced Representation using Reduced Representation Bisulfite Sequencing (RRBS) (GSE59916)
True
mickael.dong
April 20, 2017, 4:34 a.m.
July 25, 2018, 7:29 a.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006869BS | DCD000321SR | tissue | Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago | AB | 90 Days-2 Years | liver | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001782AA | DCD013294BR | RRBS_Chatterjee_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Sequencing Date |
|---|---|---|---|---|---|
| DCD002153SQ | DCD002140TR | Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago | Illumina | HiSeq 2000 | 10/01/2014 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD006870BS | DCD000321SR | tissue | Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago | AB | 90 Days-2 Years | brain | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD001785AA | DCD013296BR | RRBS_Chatterjee_Lab_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Sequencing Date |
|---|---|---|---|---|---|
| DCD002157SQ | DCD002144TR | Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago | Illumina | HiSeq 2000 | 10/01/2014 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Sequencing Date |
|---|---|---|---|---|---|
| DCD002156SQ | DCD002143TR | Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago | Illumina | HiSeq 2000 | 10/01/2014 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Controlled By | anatomical_term | Treatment | Hours Post Fertilization | Mutation Description |
|---|---|---|---|---|---|---|---|---|---|---|
| DCD006871BS | DCD000321SR | tissue | Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago | AB | 90 Days-2 Years | brain | — | adult | — |
| Applied Assay ID | Biosample Replicate | Assay | Controlled By |
|---|---|---|---|
| DCD001783AA | DCD013298BR | RRBS_Chatterjee_Lab_0002AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|---|---|
| DCD002155SQ | DCD002142TR | Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago | Illumina | HiSeq 2000 | — | ✘ | — | — | 10/01/2014 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Sequencing Date |
|---|---|---|---|---|---|
| DCD002154SQ | DCD002141TR | Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago | Illumina | HiSeq 2000 | 10/01/2014 |