Series Summary for DCD000321SR

Genome-wide DNA methylation map of Zebrafish liver, male brain and female brain (RRBS)

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10.4161/epi.25797

GSE59916, GSE59917

Here we generated single-nucleotide resoultion DNA methylation map of 1) zebrafish pooled liver sample using Reduced Representation Bisulfite Sequencing (RRBS) (GSE59917) and of 2) 4 zebrafish brain samples using Reduced Representation using Reduced Representation Bisulfite Sequencing (RRBS) (GSE59916)

True

mickael.dong

April 20, 2017, 4:34 a.m.

July 25, 2018, 7:29 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background
DCD006869BS DCD000321SR tissue Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB
Applied Assay ID Biosample Replicate Assay
DCD001782AA DCD013294BR RRBS_Chatterjee_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002153SQ DCD002140TR Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 10/01/2014
DCD004624DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006870BS DCD000321SR tissue Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB
Applied Assay ID Biosample Replicate Assay
DCD001785AA DCD013296BR RRBS_Chatterjee_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002157SQ DCD002144TR Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 10/01/2014
DCD004628DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002156SQ DCD002143TR Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 10/01/2014
DCD004627DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD006871BS DCD000321SR tissue Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago AB
Applied Assay ID Biosample Replicate Assay
DCD001783AA DCD013298BR RRBS_Chatterjee_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002155SQ DCD002142TR Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 10/01/2014
DCD004626DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002154SQ DCD002141TR Chatterjee Lab, Department of Pathology, Dunedin School of Medicine, University of Otago Illumina HiSeq 2000 10/01/2014
DCD004625DT: FASTQ