SAPAS Illumina library for 8 developmental stages: Dynamic landscape of tandem 3’UTRs during zebrafish development
Survey
10.1101/gr.128488.111
SRA036536
Eight time points across all major developmental stages were sampled with one lane of the Illumina Genome Analyzer 2 platform assigned for each time point. Tandem poly(A) events have been profiled on a genome-wide scale during the embryonic development of zebrafish (Danio rerio) using a recently developed SAPAS method.
True
mickael.dong
Oct. 23, 2017, 9:22 a.m.
March 12, 2018, 3:49 a.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007011BS | DCD000371SR | whole organism | Xu Lab, School of Life Sciences, Sun Yat-sen University | TU | 1-cell | 0 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002004AA | DCD013553BR | SAPAS_Xu_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002362SQ | DCD002374TR | Xu Lab, School of Life Sciences, Sun Yat-sen University | Illumina | GAIIx | unstranded | 07/07/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007012BS | DCD000371SR | whole organism | Xu Lab, School of Life Sciences, Sun Yat-sen University | TU | 5-9 somites | 12 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002005AA | DCD013554BR | SAPAS_Xu_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002363SQ | DCD002375TR | Xu Lab, School of Life Sciences, Sun Yat-sen University | Illumina | GAIIx | unstranded | 07/07/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007013BS | DCD000371SR | whole organism | Xu Lab, School of Life Sciences, Sun Yat-sen University | TU | Sphere | 4 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002006AA | DCD013555BR | SAPAS_Xu_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002364SQ | DCD002376TR | Xu Lab, School of Life Sciences, Sun Yat-sen University | Illumina | GAIIx | unstranded | 07/07/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007014BS | DCD000371SR | whole organism | Xu Lab, School of Life Sciences, Sun Yat-sen University | TU | Shield | 6 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002007AA | DCD013556BR | SAPAS_Xu_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002365SQ | DCD002377TR | Xu Lab, School of Life Sciences, Sun Yat-sen University | Illumina | GAIIx | unstranded | 07/07/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007015BS | DCD000371SR | whole organism | Xu Lab, School of Life Sciences, Sun Yat-sen University | TU | 26+ somites | 24 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002008AA | DCD013557BR | SAPAS_Xu_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002366SQ | DCD002378TR | Xu Lab, School of Life Sciences, Sun Yat-sen University | Illumina | GAIIx | unstranded | 07/07/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007016BS | DCD000371SR | whole organism | Xu Lab, School of Life Sciences, Sun Yat-sen University | TU | Long-pec | 48 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002009AA | DCD013558BR | SAPAS_Xu_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002367SQ | DCD002379TR | Xu Lab, School of Life Sciences, Sun Yat-sen University | Illumina | GAIIx | unstranded | 07/07/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007017BS | DCD000371SR | whole organism | Xu Lab, School of Life Sciences, Sun Yat-sen University | TU | Protruding-mouth | 72 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002010AA | DCD013559BR | SAPAS_Xu_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Sequencing Date |
|---|---|---|---|---|---|---|
| DCD002368SQ | DCD002380TR | Xu Lab, School of Life Sciences, Sun Yat-sen University | Illumina | GAIIx | unstranded | 07/07/2012 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Hours Post Fertilization |
|---|---|---|---|---|---|---|
| DCD007018BS | DCD000371SR | whole organism | Xu Lab, School of Life Sciences, Sun Yat-sen University | TU | Day 6 | 120 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002011AA | DCD013560BR | SAPAS_Xu_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|
| DCD002369SQ | DCD002381TR | Xu Lab, School of Life Sciences, Sun Yat-sen University | Illumina | GAIIx | unstranded | — | 07/07/2012 |