Series Summary for DCD000371SR

SAPAS Illumina library for 8 developmental stages: Dynamic landscape of tandem 3’UTRs during zebrafish development

Survey

10.1101/gr.128488.111

SRA036536

Eight time points across all major developmental stages were sampled with one lane of the Illumina Genome Analyzer 2 platform assigned for each time point. Tandem poly(A) events have been profiled on a genome-wide scale during the embryonic development of zebrafish (Danio rerio) using a recently developed SAPAS method.

True

mickael.dong

Oct. 23, 2017, 9:22 a.m.

March 12, 2018, 3:49 a.m.

Assays

Biosample ID Series biosample_type biosample_lab genetic_background
DCD007011BS DCD000371SR whole organism Xu Lab, School of Life Sciences, Sun Yat-sen University TU
Applied Assay ID Biosample Replicate Assay
DCD002004AA DCD013553BR SAPAS_Xu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002362SQ DCD002374TR Xu Lab, School of Life Sciences, Sun Yat-sen University Illumina GAIIx unstranded 07/07/2012
DCD007918DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007012BS DCD000371SR whole organism Xu Lab, School of Life Sciences, Sun Yat-sen University TU
Applied Assay ID Biosample Replicate Assay
DCD002005AA DCD013554BR SAPAS_Xu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002363SQ DCD002375TR Xu Lab, School of Life Sciences, Sun Yat-sen University Illumina GAIIx unstranded 07/07/2012
DCD007919DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007013BS DCD000371SR whole organism Xu Lab, School of Life Sciences, Sun Yat-sen University TU
Applied Assay ID Biosample Replicate Assay
DCD002006AA DCD013555BR SAPAS_Xu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002364SQ DCD002376TR Xu Lab, School of Life Sciences, Sun Yat-sen University Illumina GAIIx unstranded 07/07/2012
DCD007920DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007014BS DCD000371SR whole organism Xu Lab, School of Life Sciences, Sun Yat-sen University TU
Applied Assay ID Biosample Replicate Assay
DCD002007AA DCD013556BR SAPAS_Xu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002365SQ DCD002377TR Xu Lab, School of Life Sciences, Sun Yat-sen University Illumina GAIIx unstranded 07/07/2012
DCD007921DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007015BS DCD000371SR whole organism Xu Lab, School of Life Sciences, Sun Yat-sen University TU
Applied Assay ID Biosample Replicate Assay
DCD002008AA DCD013557BR SAPAS_Xu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002366SQ DCD002378TR Xu Lab, School of Life Sciences, Sun Yat-sen University Illumina GAIIx unstranded 07/07/2012
DCD007922DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007016BS DCD000371SR whole organism Xu Lab, School of Life Sciences, Sun Yat-sen University TU
Applied Assay ID Biosample Replicate Assay
DCD002009AA DCD013558BR SAPAS_Xu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002367SQ DCD002379TR Xu Lab, School of Life Sciences, Sun Yat-sen University Illumina GAIIx unstranded 07/07/2012
DCD007923DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007017BS DCD000371SR whole organism Xu Lab, School of Life Sciences, Sun Yat-sen University TU
Applied Assay ID Biosample Replicate Assay
DCD002010AA DCD013559BR SAPAS_Xu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002368SQ DCD002380TR Xu Lab, School of Life Sciences, Sun Yat-sen University Illumina GAIIx unstranded 07/07/2012
DCD007924DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007018BS DCD000371SR whole organism Xu Lab, School of Life Sciences, Sun Yat-sen University TU
Applied Assay ID Biosample Replicate Assay
DCD002011AA DCD013560BR SAPAS_Xu_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002369SQ DCD002381TR Xu Lab, School of Life Sciences, Sun Yat-sen University Illumina GAIIx unstranded 07/07/2012
DCD007925DT: FASTQ