RNA-seq data from heart and mucle, adult stage: Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish
Survey
10.1038/s41598-017-00823-3
GSE85416
mRNA sequencing from embryonic heart of zebrafish larvae 4 days post fertilization, adult heart of 6-month-old WIK fish, and adult muscle of adult fish consisting of both fast-twitch and slow-twitch fibers.
True
mickael.dong
Dec. 18, 2017, 7:35 a.m.
Oct. 22, 2018, 7:02 a.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007033BS | DCD000381SR | tissue | Zhang Lab, University of Maryland | WIK | Day 4 | heart | 96 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002031AA | DCD013622BR | RNA-seq_Zhang_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002397SQ | DCD002409TR | Zhang Lab, University of Maryland | Illumina | HiSeq 2000 | TruSeq SBS Sequencing Kit version 3 | ✔ | forward | 05/01/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002396SQ | DCD002408TR | Zhang Lab, University of Maryland | Illumina | HiSeq 2000 | TruSeq SBS Sequencing Kit version 3 | ✔ | forward | 05/01/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002395SQ | DCD002407TR | Zhang Lab, University of Maryland | Illumina | HiSeq 2000 | TruSeq SBS Sequencing Kit version 3 | ✔ | forward | 05/01/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | anatomical_term | Hours Post Fertilization |
|---|---|---|---|---|---|---|---|
| DCD007034BS | DCD000381SR | tissue | Zhang Lab, University of Maryland | WIK | 90 Days-2 Years | heart | adult |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002032AA | DCD013623BR | RNA-seq_Zhang_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002400SQ | DCD002412TR | Zhang Lab, University of Maryland | Illumina | HiSeq 2000 | TruSeq SBS Sequencing Kit version 3 | ✔ | forward | 05/01/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002399SQ | DCD002411TR | Zhang Lab, University of Maryland | Illumina | HiSeq 2000 | TruSeq SBS Sequencing Kit version 3 | ✔ | forward | 05/01/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002398SQ | DCD002410TR | Zhang Lab, University of Maryland | Illumina | HiSeq 2000 | TruSeq SBS Sequencing Kit version 3 | ✔ | forward | 05/01/2017 |
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Controlled By | anatomical_term | Treatment | Hours Post Fertilization | Mutation Description |
|---|---|---|---|---|---|---|---|---|---|---|
| DCD007035BS | DCD000381SR | tissue | Zhang Lab, University of Maryland | WIK | 90 Days-2 Years | muscle | — | adult | — |
| Applied Assay ID | Biosample Replicate | Assay | Controlled By |
|---|---|---|---|
| DCD002033AA | DCD013624BR | RNA-seq_Zhang_Lab_0001AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|---|---|
| DCD002403SQ | DCD002415TR | Zhang Lab, University of Maryland | Illumina | HiSeq 2000 | TruSeq SBS Sequencing Kit version 3 | ✔ | forward | — | 05/01/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002402SQ | DCD002414TR | Zhang Lab, University of Maryland | Illumina | HiSeq 2000 | TruSeq SBS Sequencing Kit version 3 | ✔ | forward | 05/01/2017 |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002401SQ | DCD002413TR | Zhang Lab, University of Maryland | Illumina | HiSeq 2000 | TruSeq SBS Sequencing Kit version 3 | ✔ | forward | 05/01/2017 |