Series Summary for DCD000381SR

RNA-seq data from heart and mucle, adult stage: Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish

Survey

10.1038/s41598-017-00823-3

GSE85416

mRNA sequencing from embryonic heart of zebrafish larvae 4 days post fertilization, adult heart of 6-month-old WIK fish, and adult muscle of adult fish consisting of both fast-twitch and slow-twitch fibers.

True

mickael.dong

Dec. 18, 2017, 7:35 a.m.

Oct. 22, 2018, 7:02 a.m.

Assays

Biosample ID Series biosample_type biosample_lab genetic_background stage Anatomical Term Hours Post Fertilization
DCD007033BS DCD000381SR tissue Zhang Lab, University of Maryland WIK Day 4 heart 96
Applied Assay ID Biosample Replicate Assay
DCD002031AA DCD013622BR RNA-seq_Zhang_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002397SQ DCD002409TR Zhang Lab, University of Maryland Illumina HiSeq 2000 forward 05/01/2017
DCD007953DT: FASTQ
DCD008766DT: BIGWIG GRCz10/danRer10
DCD010273DT: LOG GRCz10/danRer10
DCD010274DT: TSV GRCz10/danRer10
DCD010275DT: TSV GRCz10/danRer10
DCD010277DT: BEDGRAPH GRCz10/danRer10
DCD010278DT: BEDGRAPH GRCz10/danRer10
DCD010279DT: PDF GRCz10/danRer10
DCD010280DT: LOG GRCz10/danRer10
DCD010281DT: PDF GRCz10/danRer10
DCD010282DT: LOG GRCz10/danRer10
DCD010283DT: BEDGRAPH GRCz10/danRer10
DCD010285DT: BEDGRAPH GRCz10/danRer10
DCD010329DT: BAM GRCz10/danRer10
DCD013242DT: LOG GRCz11/danRer11
DCD013243DT: TSV GRCz11/danRer11
DCD013244DT: TSV GRCz11/danRer11
DCD013245DT: BEDGRAPH GRCz11/danRer11
DCD013246DT: BEDGRAPH GRCz11/danRer11
DCD013247DT: BIGWIG GRCz11/danRer11
DCD013248DT: PDF GRCz11/danRer11
DCD013249DT: LOG GRCz11/danRer11
DCD013250DT: PDF GRCz11/danRer11
DCD013251DT: LOG GRCz11/danRer11
DCD013274DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002396SQ DCD002408TR Zhang Lab, University of Maryland Illumina HiSeq 2000 forward 05/01/2017
DCD007952DT: FASTQ
DCD008767DT: BIGWIG GRCz10/danRer10
DCD010297DT: LOG GRCz10/danRer10
DCD010298DT: TSV GRCz10/danRer10
DCD010299DT: TSV GRCz10/danRer10
DCD010300DT: BEDGRAPH GRCz10/danRer10
DCD010301DT: BEDGRAPH GRCz10/danRer10
DCD010302DT: BEDGRAPH GRCz10/danRer10
DCD010303DT: PDF GRCz10/danRer10
DCD010304DT: BEDGRAPH GRCz10/danRer10
DCD010305DT: LOG GRCz10/danRer10
DCD010306DT: PDF GRCz10/danRer10
DCD010307DT: LOG GRCz10/danRer10
DCD010358DT: BAM GRCz10/danRer10
DCD013231DT: LOG GRCz11/danRer11
DCD013232DT: TSV GRCz11/danRer11
DCD013233DT: TSV GRCz11/danRer11
DCD013234DT: BEDGRAPH GRCz11/danRer11
DCD013236DT: BEDGRAPH GRCz11/danRer11
DCD013237DT: PDF GRCz11/danRer11
DCD013238DT: LOG GRCz11/danRer11
DCD013239DT: PDF GRCz11/danRer11
DCD013240DT: LOG GRCz11/danRer11
DCD013241DT: BIGWIG GRCz11/danRer11
DCD013257DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002395SQ DCD002407TR Zhang Lab, University of Maryland Illumina HiSeq 2000 forward 05/01/2017
DCD007951DT: FASTQ
DCD008756DT: BIGWIG GRCz10/danRer10
DCD010370DT: LOG GRCz10/danRer10
DCD010371DT: TSV GRCz10/danRer10
DCD010372DT: TSV GRCz10/danRer10
DCD010373DT: BEDGRAPH GRCz10/danRer10
DCD010374DT: PDF GRCz10/danRer10
DCD010375DT: LOG GRCz10/danRer10
DCD010376DT: PDF GRCz10/danRer10
DCD010377DT: LOG GRCz10/danRer10
DCD010378DT: BEDGRAPH GRCz10/danRer10
DCD010379DT: BEDGRAPH GRCz10/danRer10
DCD010382DT: BEDGRAPH GRCz10/danRer10
DCD010420DT: BAM GRCz10/danRer10
DCD013220DT: LOG GRCz11/danRer11
DCD013221DT: TSV GRCz11/danRer11
DCD013222DT: TSV GRCz11/danRer11
DCD013223DT: BEDGRAPH GRCz11/danRer11
DCD013224DT: BEDGRAPH GRCz11/danRer11
DCD013225DT: BIGWIG GRCz11/danRer11
DCD013226DT: PDF GRCz11/danRer11
DCD013227DT: LOG GRCz11/danRer11
DCD013228DT: PDF GRCz11/danRer11
DCD013229DT: LOG GRCz11/danRer11
DCD013252DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Anatomical Term Hours Post Fertilization
DCD007034BS DCD000381SR tissue Zhang Lab, University of Maryland WIK 90 Days-2 Years heart adult
Applied Assay ID Biosample Replicate Assay
DCD002032AA DCD013623BR RNA-seq_Zhang_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002400SQ DCD002412TR Zhang Lab, University of Maryland Illumina HiSeq 2000 forward 05/01/2017
DCD007956DT: FASTQ
DCD008800DT: BIGWIG GRCz10/danRer10
DCD009614DT: LOG GRCz10/danRer10
DCD009615DT: TSV GRCz10/danRer10
DCD009616DT: TSV GRCz10/danRer10
DCD009617DT: BEDGRAPH GRCz10/danRer10
DCD009618DT: PDF GRCz10/danRer10
DCD009619DT: LOG GRCz10/danRer10
DCD009620DT: PDF GRCz10/danRer10
DCD009621DT: LOG GRCz10/danRer10
DCD009622DT: BEDGRAPH GRCz10/danRer10
DCD009623DT: BEDGRAPH GRCz10/danRer10
DCD009626DT: BEDGRAPH GRCz10/danRer10
DCD009654DT: BAM GRCz10/danRer10
DCD013276DT: LOG GRCz11/danRer11
DCD013277DT: TSV GRCz11/danRer11
DCD013278DT: TSV GRCz11/danRer11
DCD013280DT: BIGWIG GRCz11/danRer11
DCD013281DT: PDF GRCz11/danRer11
DCD013282DT: LOG GRCz11/danRer11
DCD013283DT: PDF GRCz11/danRer11
DCD013284DT: LOG GRCz11/danRer11
DCD013285DT: BEDGRAPH GRCz11/danRer11
DCD013289DT: BEDGRAPH GRCz11/danRer11
DCD013320DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002399SQ DCD002411TR Zhang Lab, University of Maryland Illumina HiSeq 2000 forward 05/01/2017
DCD007955DT: FASTQ
DCD008788DT: BIGWIG GRCz10/danRer10
DCD009637DT: LOG GRCz10/danRer10
DCD009638DT: TSV GRCz10/danRer10
DCD009639DT: TSV GRCz10/danRer10
DCD009640DT: BEDGRAPH GRCz10/danRer10
DCD009641DT: BEDGRAPH GRCz10/danRer10
DCD009642DT: BEDGRAPH GRCz10/danRer10
DCD009643DT: PDF GRCz10/danRer10
DCD009644DT: LOG GRCz10/danRer10
DCD009645DT: LOG GRCz10/danRer10
DCD009646DT: PDF GRCz10/danRer10
DCD009649DT: BEDGRAPH GRCz10/danRer10
DCD009671DT: BAM GRCz10/danRer10
DCD013264DT: LOG GRCz11/danRer11
DCD013265DT: TSV GRCz11/danRer11
DCD013266DT: TSV GRCz11/danRer11
DCD013267DT: BEDGRAPH GRCz11/danRer11
DCD013270DT: PDF GRCz11/danRer11
DCD013271DT: LOG GRCz11/danRer11
DCD013272DT: BIGWIG GRCz11/danRer11
DCD013273DT: PDF GRCz11/danRer11
DCD013275DT: LOG GRCz11/danRer11
DCD013279DT: BEDGRAPH GRCz11/danRer11
DCD013312DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002398SQ DCD002410TR Zhang Lab, University of Maryland Illumina HiSeq 2000 forward 05/01/2017
DCD007954DT: FASTQ
DCD008782DT: BIGWIG GRCz10/danRer10
DCD010106DT: LOG GRCz10/danRer10
DCD010107DT: TSV GRCz10/danRer10
DCD010108DT: TSV GRCz10/danRer10
DCD010109DT: BEDGRAPH GRCz10/danRer10
DCD010110DT: BEDGRAPH GRCz10/danRer10
DCD010111DT: BEDGRAPH GRCz10/danRer10
DCD010112DT: PDF GRCz10/danRer10
DCD010113DT: LOG GRCz10/danRer10
DCD010114DT: PDF GRCz10/danRer10
DCD010115DT: LOG GRCz10/danRer10
DCD010116DT: BEDGRAPH GRCz10/danRer10
DCD010222DT: BAM GRCz10/danRer10
DCD013253DT: LOG GRCz11/danRer11
DCD013254DT: TSV GRCz11/danRer11
DCD013255DT: TSV GRCz11/danRer11
DCD013256DT: BEDGRAPH GRCz11/danRer11
DCD013258DT: BIGWIG GRCz11/danRer11
DCD013259DT: PDF GRCz11/danRer11
DCD013260DT: LOG GRCz11/danRer11
DCD013261DT: PDF GRCz11/danRer11
DCD013262DT: LOG GRCz11/danRer11
DCD013263DT: BEDGRAPH GRCz11/danRer11
DCD013290DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Anatomical Term Hours Post Fertilization
DCD007035BS DCD000381SR tissue Zhang Lab, University of Maryland WIK 90 Days-2 Years muscle adult
Applied Assay ID Biosample Replicate Assay
DCD002033AA DCD013624BR RNA-seq_Zhang_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002403SQ DCD002415TR Zhang Lab, University of Maryland Illumina HiSeq 2000 forward 05/01/2017
DCD007959DT: FASTQ
DCD008819DT: BIGWIG GRCz10/danRer10
DCD009734DT: LOG GRCz10/danRer10
DCD009735DT: TSV GRCz10/danRer10
DCD009736DT: TSV GRCz10/danRer10
DCD009737DT: BEDGRAPH GRCz10/danRer10
DCD009738DT: PDF GRCz10/danRer10
DCD009739DT: LOG GRCz10/danRer10
DCD009740DT: PDF GRCz10/danRer10
DCD009741DT: LOG GRCz10/danRer10
DCD009742DT: BEDGRAPH GRCz10/danRer10
DCD009744DT: BEDGRAPH GRCz10/danRer10
DCD009745DT: BEDGRAPH GRCz10/danRer10
DCD009770DT: BAM GRCz10/danRer10
DCD013308DT: LOG GRCz11/danRer11
DCD013309DT: TSV GRCz11/danRer11
DCD013310DT: TSV GRCz11/danRer11
DCD013311DT: BEDGRAPH GRCz11/danRer11
DCD013313DT: BEDGRAPH GRCz11/danRer11
DCD013314DT: BIGWIG GRCz11/danRer11
DCD013315DT: LOG GRCz11/danRer11
DCD013316DT: PDF GRCz11/danRer11
DCD013317DT: LOG GRCz11/danRer11
DCD013318DT: PDF GRCz11/danRer11
DCD013322DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002402SQ DCD002414TR Zhang Lab, University of Maryland Illumina HiSeq 2000 forward 05/01/2017
DCD007958DT: FASTQ
DCD008830DT: BIGWIG GRCz10/danRer10
DCD009564DT: LOG GRCz10/danRer10
DCD009567DT: TSV GRCz10/danRer10
DCD009568DT: TSV GRCz10/danRer10
DCD009569DT: BEDGRAPH GRCz10/danRer10
DCD009570DT: BEDGRAPH GRCz10/danRer10
DCD009571DT: BEDGRAPH GRCz10/danRer10
DCD009572DT: BEDGRAPH GRCz10/danRer10
DCD009573DT: LOG GRCz10/danRer10
DCD009574DT: LOG GRCz10/danRer10
DCD009575DT: PDF GRCz10/danRer10
DCD009576DT: PDF GRCz10/danRer10
DCD009592DT: BAM GRCz10/danRer10
DCD013297DT: LOG GRCz11/danRer11
DCD013298DT: TSV GRCz11/danRer11
DCD013299DT: TSV GRCz11/danRer11
DCD013301DT: BEDGRAPH GRCz11/danRer11
DCD013302DT: BIGWIG GRCz11/danRer11
DCD013303DT: PDF GRCz11/danRer11
DCD013304DT: LOG GRCz11/danRer11
DCD013305DT: PDF GRCz11/danRer11
DCD013306DT: LOG GRCz11/danRer11
DCD013307DT: BEDGRAPH GRCz11/danRer11
DCD013321DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Sequencing Date
DCD002401SQ DCD002413TR Zhang Lab, University of Maryland Illumina HiSeq 2000 forward 05/01/2017
DCD007957DT: FASTQ
DCD008829DT: BIGWIG GRCz10/danRer10
DCD009515DT: LOG GRCz10/danRer10
DCD009516DT: TSV GRCz10/danRer10
DCD009517DT: TSV GRCz10/danRer10
DCD009519DT: BEDGRAPH GRCz10/danRer10
DCD009520DT: BEDGRAPH GRCz10/danRer10
DCD009521DT: BEDGRAPH GRCz10/danRer10
DCD009522DT: PDF GRCz10/danRer10
DCD009523DT: LOG GRCz10/danRer10
DCD009524DT: PDF GRCz10/danRer10
DCD009525DT: LOG GRCz10/danRer10
DCD009526DT: BEDGRAPH GRCz10/danRer10
DCD009566DT: BAM GRCz10/danRer10
DCD013286DT: LOG GRCz11/danRer11
DCD013287DT: TSV GRCz11/danRer11
DCD013288DT: TSV GRCz11/danRer11
DCD013291DT: BEDGRAPH GRCz11/danRer11
DCD013292DT: PDF GRCz11/danRer11
DCD013293DT: LOG GRCz11/danRer11
DCD013294DT: BIGWIG GRCz11/danRer11
DCD013295DT: PDF GRCz11/danRer11
DCD013296DT: LOG GRCz11/danRer11
DCD013300DT: BEDGRAPH GRCz11/danRer11
DCD013319DT: BAM GRCz11/danRer11