Series Summary for DCD000381SR

RNA-seq data from heart and mucle, adult stage: Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish

Survey

10.1038/s41598-017-00823-3

GSE85416

mRNA sequencing from embryonic heart of zebrafish larvae 4 days post fertilization, adult heart of 6-month-old WIK fish, and adult muscle of adult fish consisting of both fast-twitch and slow-twitch fibers.

True

mickael.dong

Dec. 18, 2017, 7:35 a.m.

Oct. 22, 2018, 7:02 a.m.

Assays

Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007033BS DCD000381SR tissue Zhang Lab, University of Maryland WIK Day 4 heart 96
Applied Assay ID Biosample Replicate Assay
DCD002031AA DCD013622BR RNA-seq_Zhang_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002397SQ DCD002409TR Zhang Lab, University of Maryland Illumina HiSeq 2000 TruSeq SBS Sequencing Kit version 3 forward 05/01/2017
DCD007953DT: FASTQ
DCD008766DT: BIGWIG GRCz10/danRer10
DCD010273DT: LOG GRCz10/danRer10
DCD010274DT: TSV GRCz10/danRer10
DCD010275DT: TSV GRCz10/danRer10
DCD010277DT: BEDGRAPH GRCz10/danRer10
DCD010278DT: BEDGRAPH GRCz10/danRer10
DCD010279DT: PDF GRCz10/danRer10
DCD010280DT: LOG GRCz10/danRer10
DCD010281DT: PDF GRCz10/danRer10
DCD010282DT: LOG GRCz10/danRer10
DCD010283DT: BEDGRAPH GRCz10/danRer10
DCD010285DT: BEDGRAPH GRCz10/danRer10
DCD010329DT: BAM GRCz10/danRer10
DCD013242DT: LOG GRCz11/danRer11
DCD013243DT: TSV GRCz11/danRer11
DCD013244DT: TSV GRCz11/danRer11
DCD013245DT: BEDGRAPH GRCz11/danRer11
DCD013246DT: BEDGRAPH GRCz11/danRer11
DCD013247DT: BIGWIG GRCz11/danRer11
DCD013248DT: PDF GRCz11/danRer11
DCD013249DT: LOG GRCz11/danRer11
DCD013250DT: PDF GRCz11/danRer11
DCD013251DT: LOG GRCz11/danRer11
DCD013274DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002396SQ DCD002408TR Zhang Lab, University of Maryland Illumina HiSeq 2000 TruSeq SBS Sequencing Kit version 3 forward 05/01/2017
DCD007952DT: FASTQ
DCD008767DT: BIGWIG GRCz10/danRer10
DCD010297DT: LOG GRCz10/danRer10
DCD010298DT: TSV GRCz10/danRer10
DCD010299DT: TSV GRCz10/danRer10
DCD010300DT: BEDGRAPH GRCz10/danRer10
DCD010301DT: BEDGRAPH GRCz10/danRer10
DCD010302DT: BEDGRAPH GRCz10/danRer10
DCD010303DT: PDF GRCz10/danRer10
DCD010304DT: BEDGRAPH GRCz10/danRer10
DCD010305DT: LOG GRCz10/danRer10
DCD010306DT: PDF GRCz10/danRer10
DCD010307DT: LOG GRCz10/danRer10
DCD010358DT: BAM GRCz10/danRer10
DCD013231DT: LOG GRCz11/danRer11
DCD013232DT: TSV GRCz11/danRer11
DCD013233DT: TSV GRCz11/danRer11
DCD013234DT: BEDGRAPH GRCz11/danRer11
DCD013236DT: BEDGRAPH GRCz11/danRer11
DCD013237DT: PDF GRCz11/danRer11
DCD013238DT: LOG GRCz11/danRer11
DCD013239DT: PDF GRCz11/danRer11
DCD013240DT: LOG GRCz11/danRer11
DCD013241DT: BIGWIG GRCz11/danRer11
DCD013257DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002395SQ DCD002407TR Zhang Lab, University of Maryland Illumina HiSeq 2000 TruSeq SBS Sequencing Kit version 3 forward 05/01/2017
DCD007951DT: FASTQ
DCD008756DT: BIGWIG GRCz10/danRer10
DCD010370DT: LOG GRCz10/danRer10
DCD010371DT: TSV GRCz10/danRer10
DCD010372DT: TSV GRCz10/danRer10
DCD010373DT: BEDGRAPH GRCz10/danRer10
DCD010374DT: PDF GRCz10/danRer10
DCD010375DT: LOG GRCz10/danRer10
DCD010376DT: PDF GRCz10/danRer10
DCD010377DT: LOG GRCz10/danRer10
DCD010378DT: BEDGRAPH GRCz10/danRer10
DCD010379DT: BEDGRAPH GRCz10/danRer10
DCD010382DT: BEDGRAPH GRCz10/danRer10
DCD010420DT: BAM GRCz10/danRer10
DCD013220DT: LOG GRCz11/danRer11
DCD013221DT: TSV GRCz11/danRer11
DCD013222DT: TSV GRCz11/danRer11
DCD013223DT: BEDGRAPH GRCz11/danRer11
DCD013224DT: BEDGRAPH GRCz11/danRer11
DCD013225DT: BIGWIG GRCz11/danRer11
DCD013226DT: PDF GRCz11/danRer11
DCD013227DT: LOG GRCz11/danRer11
DCD013228DT: PDF GRCz11/danRer11
DCD013229DT: LOG GRCz11/danRer11
DCD013252DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007034BS DCD000381SR tissue Zhang Lab, University of Maryland WIK 90 Days-2 Years heart adult
Applied Assay ID Biosample Replicate Assay
DCD002032AA DCD013623BR RNA-seq_Zhang_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002400SQ DCD002412TR Zhang Lab, University of Maryland Illumina HiSeq 2000 TruSeq SBS Sequencing Kit version 3 forward 05/01/2017
DCD007956DT: FASTQ
DCD008800DT: BIGWIG GRCz10/danRer10
DCD009614DT: LOG GRCz10/danRer10
DCD009615DT: TSV GRCz10/danRer10
DCD009616DT: TSV GRCz10/danRer10
DCD009617DT: BEDGRAPH GRCz10/danRer10
DCD009618DT: PDF GRCz10/danRer10
DCD009619DT: LOG GRCz10/danRer10
DCD009620DT: PDF GRCz10/danRer10
DCD009621DT: LOG GRCz10/danRer10
DCD009622DT: BEDGRAPH GRCz10/danRer10
DCD009623DT: BEDGRAPH GRCz10/danRer10
DCD009626DT: BEDGRAPH GRCz10/danRer10
DCD009654DT: BAM GRCz10/danRer10
DCD013276DT: LOG GRCz11/danRer11
DCD013277DT: TSV GRCz11/danRer11
DCD013278DT: TSV GRCz11/danRer11
DCD013280DT: BIGWIG GRCz11/danRer11
DCD013281DT: PDF GRCz11/danRer11
DCD013282DT: LOG GRCz11/danRer11
DCD013283DT: PDF GRCz11/danRer11
DCD013284DT: LOG GRCz11/danRer11
DCD013285DT: BEDGRAPH GRCz11/danRer11
DCD013289DT: BEDGRAPH GRCz11/danRer11
DCD013320DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002399SQ DCD002411TR Zhang Lab, University of Maryland Illumina HiSeq 2000 TruSeq SBS Sequencing Kit version 3 forward 05/01/2017
DCD007955DT: FASTQ
DCD008788DT: BIGWIG GRCz10/danRer10
DCD009637DT: LOG GRCz10/danRer10
DCD009638DT: TSV GRCz10/danRer10
DCD009639DT: TSV GRCz10/danRer10
DCD009640DT: BEDGRAPH GRCz10/danRer10
DCD009641DT: BEDGRAPH GRCz10/danRer10
DCD009642DT: BEDGRAPH GRCz10/danRer10
DCD009643DT: PDF GRCz10/danRer10
DCD009644DT: LOG GRCz10/danRer10
DCD009645DT: LOG GRCz10/danRer10
DCD009646DT: PDF GRCz10/danRer10
DCD009649DT: BEDGRAPH GRCz10/danRer10
DCD009671DT: BAM GRCz10/danRer10
DCD013264DT: LOG GRCz11/danRer11
DCD013265DT: TSV GRCz11/danRer11
DCD013266DT: TSV GRCz11/danRer11
DCD013267DT: BEDGRAPH GRCz11/danRer11
DCD013270DT: PDF GRCz11/danRer11
DCD013271DT: LOG GRCz11/danRer11
DCD013272DT: BIGWIG GRCz11/danRer11
DCD013273DT: PDF GRCz11/danRer11
DCD013275DT: LOG GRCz11/danRer11
DCD013279DT: BEDGRAPH GRCz11/danRer11
DCD013312DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002398SQ DCD002410TR Zhang Lab, University of Maryland Illumina HiSeq 2000 TruSeq SBS Sequencing Kit version 3 forward 05/01/2017
DCD007954DT: FASTQ
DCD008782DT: BIGWIG GRCz10/danRer10
DCD010106DT: LOG GRCz10/danRer10
DCD010107DT: TSV GRCz10/danRer10
DCD010108DT: TSV GRCz10/danRer10
DCD010109DT: BEDGRAPH GRCz10/danRer10
DCD010110DT: BEDGRAPH GRCz10/danRer10
DCD010111DT: BEDGRAPH GRCz10/danRer10
DCD010112DT: PDF GRCz10/danRer10
DCD010113DT: LOG GRCz10/danRer10
DCD010114DT: PDF GRCz10/danRer10
DCD010115DT: LOG GRCz10/danRer10
DCD010116DT: BEDGRAPH GRCz10/danRer10
DCD010222DT: BAM GRCz10/danRer10
DCD013253DT: LOG GRCz11/danRer11
DCD013254DT: TSV GRCz11/danRer11
DCD013255DT: TSV GRCz11/danRer11
DCD013256DT: BEDGRAPH GRCz11/danRer11
DCD013258DT: BIGWIG GRCz11/danRer11
DCD013259DT: PDF GRCz11/danRer11
DCD013260DT: LOG GRCz11/danRer11
DCD013261DT: PDF GRCz11/danRer11
DCD013262DT: LOG GRCz11/danRer11
DCD013263DT: BEDGRAPH GRCz11/danRer11
DCD013290DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007035BS DCD000381SR tissue Zhang Lab, University of Maryland WIK 90 Days-2 Years muscle adult
Applied Assay ID Biosample Replicate Assay
DCD002033AA DCD013624BR RNA-seq_Zhang_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002403SQ DCD002415TR Zhang Lab, University of Maryland Illumina HiSeq 2000 TruSeq SBS Sequencing Kit version 3 forward 05/01/2017
DCD007959DT: FASTQ
DCD008819DT: BIGWIG GRCz10/danRer10
DCD009734DT: LOG GRCz10/danRer10
DCD009735DT: TSV GRCz10/danRer10
DCD009736DT: TSV GRCz10/danRer10
DCD009737DT: BEDGRAPH GRCz10/danRer10
DCD009738DT: PDF GRCz10/danRer10
DCD009739DT: LOG GRCz10/danRer10
DCD009740DT: PDF GRCz10/danRer10
DCD009741DT: LOG GRCz10/danRer10
DCD009742DT: BEDGRAPH GRCz10/danRer10
DCD009744DT: BEDGRAPH GRCz10/danRer10
DCD009745DT: BEDGRAPH GRCz10/danRer10
DCD009770DT: BAM GRCz10/danRer10
DCD013308DT: LOG GRCz11/danRer11
DCD013309DT: TSV GRCz11/danRer11
DCD013310DT: TSV GRCz11/danRer11
DCD013311DT: BEDGRAPH GRCz11/danRer11
DCD013313DT: BEDGRAPH GRCz11/danRer11
DCD013314DT: BIGWIG GRCz11/danRer11
DCD013315DT: LOG GRCz11/danRer11
DCD013316DT: PDF GRCz11/danRer11
DCD013317DT: LOG GRCz11/danRer11
DCD013318DT: PDF GRCz11/danRer11
DCD013322DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002402SQ DCD002414TR Zhang Lab, University of Maryland Illumina HiSeq 2000 TruSeq SBS Sequencing Kit version 3 forward 05/01/2017
DCD007958DT: FASTQ
DCD008830DT: BIGWIG GRCz10/danRer10
DCD009564DT: LOG GRCz10/danRer10
DCD009567DT: TSV GRCz10/danRer10
DCD009568DT: TSV GRCz10/danRer10
DCD009569DT: BEDGRAPH GRCz10/danRer10
DCD009570DT: BEDGRAPH GRCz10/danRer10
DCD009571DT: BEDGRAPH GRCz10/danRer10
DCD009572DT: BEDGRAPH GRCz10/danRer10
DCD009573DT: LOG GRCz10/danRer10
DCD009574DT: LOG GRCz10/danRer10
DCD009575DT: PDF GRCz10/danRer10
DCD009576DT: PDF GRCz10/danRer10
DCD009592DT: BAM GRCz10/danRer10
DCD013297DT: LOG GRCz11/danRer11
DCD013298DT: TSV GRCz11/danRer11
DCD013299DT: TSV GRCz11/danRer11
DCD013301DT: BEDGRAPH GRCz11/danRer11
DCD013302DT: BIGWIG GRCz11/danRer11
DCD013303DT: PDF GRCz11/danRer11
DCD013304DT: LOG GRCz11/danRer11
DCD013305DT: PDF GRCz11/danRer11
DCD013306DT: LOG GRCz11/danRer11
DCD013307DT: BEDGRAPH GRCz11/danRer11
DCD013321DT: BAM GRCz11/danRer11
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002401SQ DCD002413TR Zhang Lab, University of Maryland Illumina HiSeq 2000 TruSeq SBS Sequencing Kit version 3 forward 05/01/2017
DCD007957DT: FASTQ
DCD008829DT: BIGWIG GRCz10/danRer10
DCD009515DT: LOG GRCz10/danRer10
DCD009516DT: TSV GRCz10/danRer10
DCD009517DT: TSV GRCz10/danRer10
DCD009519DT: BEDGRAPH GRCz10/danRer10
DCD009520DT: BEDGRAPH GRCz10/danRer10
DCD009521DT: BEDGRAPH GRCz10/danRer10
DCD009522DT: PDF GRCz10/danRer10
DCD009523DT: LOG GRCz10/danRer10
DCD009524DT: PDF GRCz10/danRer10
DCD009525DT: LOG GRCz10/danRer10
DCD009526DT: BEDGRAPH GRCz10/danRer10
DCD009566DT: BAM GRCz10/danRer10
DCD013286DT: LOG GRCz11/danRer11
DCD013287DT: TSV GRCz11/danRer11
DCD013288DT: TSV GRCz11/danRer11
DCD013291DT: BEDGRAPH GRCz11/danRer11
DCD013292DT: PDF GRCz11/danRer11
DCD013293DT: LOG GRCz11/danRer11
DCD013294DT: BIGWIG GRCz11/danRer11
DCD013295DT: PDF GRCz11/danRer11
DCD013296DT: LOG GRCz11/danRer11
DCD013300DT: BEDGRAPH GRCz11/danRer11
DCD013319DT: BAM GRCz11/danRer11