Series Summary for DCD000382SR

RNA-seq of 12 different adult zebrafish tissues from the Phylofish Database

Survey

10.1186/s12864-016-2709-z

SRP044781

It is currently difficult to compare gene expression among teleost species due to the lack of an exhaustive gene repertoire in all but a few species and the lack of expression data collected using comparable methodologies across the same tissues and stages in different species. The PhyloFish database was designed to address both questions and provides a comprehensive gene repertoire from de novo assembled RNA-seq data in a large number of species chosen to entirely span the ray-finned fish tree of life with special attention for TGD and SaGD WGD events. Separate libraries were obtained from the following tissues or organs to allow analysis of tissue specific expression patterns: brain, liver, gills, heart, muscle, liver, kidney, bones, intestine, ovary, and testis. Tissues were sampled from the same female individual and testis from a male individual, when possible.

True

mickael.dong

Jan. 8, 2018, 5:03 a.m.

Oct. 22, 2018, 3:42 a.m.

Assays

Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007036BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years brain adult
Applied Assay ID Biosample Replicate Assay
DCD002034AA DCD013625BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002404SQ DCD002416TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007960DT: FASTQ
DCD008790DT: BIGWIG GRCz10/danRer10
DCD009819DT: LOG GRCz10/danRer10
DCD009820DT: TSV GRCz10/danRer10
DCD009821DT: TSV GRCz10/danRer10
DCD009822DT: BEDGRAPH GRCz10/danRer10
DCD009823DT: BEDGRAPH GRCz10/danRer10
DCD009824DT: BEDGRAPH GRCz10/danRer10
DCD009825DT: PDF GRCz10/danRer10
DCD009826DT: BEDGRAPH GRCz10/danRer10
DCD009827DT: LOG GRCz10/danRer10
DCD009828DT: LOG GRCz10/danRer10
DCD009830DT: PDF GRCz10/danRer10
DCD009832DT: BAM GRCz10/danRer10
DCD012718DT: LOG GRCz11/danRer11
DCD012719DT: TSV GRCz11/danRer11
DCD012720DT: TSV GRCz11/danRer11
DCD012721DT: LOG GRCz11/danRer11
DCD012722DT: PDF GRCz11/danRer11
DCD012723DT: LOG GRCz11/danRer11
DCD012724DT: PDF GRCz11/danRer11
DCD012728DT: BIGWIG GRCz11/danRer11
DCD012729DT: BEDGRAPH GRCz11/danRer11
DCD012730DT: BEDGRAPH GRCz11/danRer11
DCD012770DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007037BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years gill adult
Applied Assay ID Biosample Replicate Assay
DCD002035AA DCD013626BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002405SQ DCD002417TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007961DT: FASTQ
DCD008822DT: BIGWIG GRCz10/danRer10
DCD009408DT: LOG GRCz10/danRer10
DCD009409DT: TSV GRCz10/danRer10
DCD009410DT: TSV GRCz10/danRer10
DCD009412DT: BEDGRAPH GRCz10/danRer10
DCD009413DT: BEDGRAPH GRCz10/danRer10
DCD009414DT: BEDGRAPH GRCz10/danRer10
DCD009415DT: PDF GRCz10/danRer10
DCD009416DT: LOG GRCz10/danRer10
DCD009417DT: PDF GRCz10/danRer10
DCD009418DT: BEDGRAPH GRCz10/danRer10
DCD009419DT: LOG GRCz10/danRer10
DCD009456DT: BAM GRCz10/danRer10
DCD012725DT: LOG GRCz11/danRer11
DCD012726DT: TSV GRCz11/danRer11
DCD012727DT: TSV GRCz11/danRer11
DCD012731DT: PDF GRCz11/danRer11
DCD012732DT: LOG GRCz11/danRer11
DCD012733DT: BEDGRAPH GRCz11/danRer11
DCD012734DT: LOG GRCz11/danRer11
DCD012735DT: PDF GRCz11/danRer11
DCD012739DT: BIGWIG GRCz11/danRer11
DCD012740DT: BEDGRAPH GRCz11/danRer11
DCD012784DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007038BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years heart adult
Applied Assay ID Biosample Replicate Assay
DCD002036AA DCD013627BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002406SQ DCD002418TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007962DT: FASTQ
DCD008862DT: BIGWIG GRCz10/danRer10
DCD009131DT: LOG GRCz10/danRer10
DCD009135DT: TSV GRCz10/danRer10
DCD009136DT: TSV GRCz10/danRer10
DCD009137DT: BEDGRAPH GRCz10/danRer10
DCD009138DT: BEDGRAPH GRCz10/danRer10
DCD009139DT: BEDGRAPH GRCz10/danRer10
DCD009140DT: PDF GRCz10/danRer10
DCD009141DT: PDF GRCz10/danRer10
DCD009142DT: LOG GRCz10/danRer10
DCD009143DT: LOG GRCz10/danRer10
DCD009148DT: BEDGRAPH GRCz10/danRer10
DCD009238DT: BAM GRCz10/danRer10
DCD012736DT: LOG GRCz11/danRer11
DCD012737DT: TSV GRCz11/danRer11
DCD012738DT: TSV GRCz11/danRer11
DCD012741DT: BIGWIG GRCz11/danRer11
DCD012742DT: PDF GRCz11/danRer11
DCD012743DT: LOG GRCz11/danRer11
DCD012744DT: PDF GRCz11/danRer11
DCD012745DT: LOG GRCz11/danRer11
DCD012746DT: BEDGRAPH GRCz11/danRer11
DCD012750DT: BEDGRAPH GRCz11/danRer11
DCD012838DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD007039BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years muscle adult
Applied Assay ID Biosample Replicate Assay Controlled By
DCD002037AA DCD013628BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD002407SQ DCD002419TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007963DT: FASTQ
DCD008811DT: BIGWIG GRCz10/danRer10
DCD009843DT: LOG GRCz10/danRer10
DCD009844DT: TSV GRCz10/danRer10
DCD009845DT: TSV GRCz10/danRer10
DCD009846DT: BEDGRAPH GRCz10/danRer10
DCD009847DT: BEDGRAPH GRCz10/danRer10
DCD009848DT: PDF GRCz10/danRer10
DCD009849DT: BEDGRAPH GRCz10/danRer10
DCD009850DT: BEDGRAPH GRCz10/danRer10
DCD009851DT: LOG GRCz10/danRer10
DCD009852DT: PDF GRCz10/danRer10
DCD009853DT: LOG GRCz10/danRer10
DCD009858DT: BAM GRCz10/danRer10
DCD012747DT: LOG GRCz11/danRer11
DCD012748DT: TSV GRCz11/danRer11
DCD012749DT: TSV GRCz11/danRer11
DCD012751DT: BEDGRAPH GRCz11/danRer11
DCD012752DT: BIGWIG GRCz11/danRer11
DCD012753DT: PDF GRCz11/danRer11
DCD012754DT: LOG GRCz11/danRer11
DCD012755DT: PDF GRCz11/danRer11
DCD012756DT: LOG GRCz11/danRer11
DCD012757DT: BEDGRAPH GRCz11/danRer11
DCD012768DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007040BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years liver adult
Applied Assay ID Biosample Replicate Assay
DCD002038AA DCD013629BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002408SQ DCD002420TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007964DT: FASTQ
DCD008860DT: BIGWIG GRCz10/danRer10
DCD009123DT: LOG GRCz10/danRer10
DCD009124DT: TSV GRCz10/danRer10
DCD009125DT: TSV GRCz10/danRer10
DCD009126DT: BEDGRAPH GRCz10/danRer10
DCD009127DT: PDF GRCz10/danRer10
DCD009128DT: BEDGRAPH GRCz10/danRer10
DCD009129DT: BEDGRAPH GRCz10/danRer10
DCD009130DT: BEDGRAPH GRCz10/danRer10
DCD009132DT: LOG GRCz10/danRer10
DCD009133DT: LOG GRCz10/danRer10
DCD009134DT: PDF GRCz10/danRer10
DCD009165DT: BAM GRCz10/danRer10
DCD012758DT: LOG GRCz11/danRer11
DCD012759DT: TSV GRCz11/danRer11
DCD012760DT: TSV GRCz11/danRer11
DCD012761DT: BEDGRAPH GRCz11/danRer11
DCD012762DT: BEDGRAPH GRCz11/danRer11
DCD012763DT: BIGWIG GRCz11/danRer11
DCD012764DT: PDF GRCz11/danRer11
DCD012765DT: LOG GRCz11/danRer11
DCD012766DT: PDF GRCz11/danRer11
DCD012767DT: LOG GRCz11/danRer11
DCD012805DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007041BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years kidney adult
Applied Assay ID Biosample Replicate Assay
DCD002039AA DCD013630BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002409SQ DCD002421TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007965DT: FASTQ
DCD008831DT: BIGWIG GRCz10/danRer10
DCD009443DT: LOG GRCz10/danRer10
DCD009444DT: TSV GRCz10/danRer10
DCD009445DT: TSV GRCz10/danRer10
DCD009447DT: BEDGRAPH GRCz10/danRer10
DCD009448DT: BEDGRAPH GRCz10/danRer10
DCD009449DT: BEDGRAPH GRCz10/danRer10
DCD009450DT: PDF GRCz10/danRer10
DCD009451DT: BEDGRAPH GRCz10/danRer10
DCD009452DT: LOG GRCz10/danRer10
DCD009453DT: PDF GRCz10/danRer10
DCD009454DT: LOG GRCz10/danRer10
DCD009472DT: BAM GRCz10/danRer10
DCD012769DT: LOG GRCz11/danRer11
DCD012771DT: TSV GRCz11/danRer11
DCD012772DT: TSV GRCz11/danRer11
DCD012773DT: BEDGRAPH GRCz11/danRer11
DCD012774DT: BEDGRAPH GRCz11/danRer11
DCD012775DT: PDF GRCz11/danRer11
DCD012776DT: LOG GRCz11/danRer11
DCD012777DT: PDF GRCz11/danRer11
DCD012778DT: LOG GRCz11/danRer11
DCD012779DT: BIGWIG GRCz11/danRer11
DCD012795DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007042BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years bone tissue adult
Applied Assay ID Biosample Replicate Assay
DCD002040AA DCD013631BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002410SQ DCD002422TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007966DT: FASTQ
DCD008859DT: BIGWIG GRCz10/danRer10
DCD009144DT: LOG GRCz10/danRer10
DCD009145DT: TSV GRCz10/danRer10
DCD009146DT: TSV GRCz10/danRer10
DCD009147DT: BEDGRAPH GRCz10/danRer10
DCD009149DT: BEDGRAPH GRCz10/danRer10
DCD009150DT: PDF GRCz10/danRer10
DCD009151DT: LOG GRCz10/danRer10
DCD009152DT: BEDGRAPH GRCz10/danRer10
DCD009153DT: PDF GRCz10/danRer10
DCD009154DT: LOG GRCz10/danRer10
DCD009156DT: BEDGRAPH GRCz10/danRer10
DCD009206DT: BAM GRCz10/danRer10
DCD012780DT: LOG GRCz11/danRer11
DCD012781DT: TSV GRCz11/danRer11
DCD012782DT: TSV GRCz11/danRer11
DCD012783DT: BEDGRAPH GRCz11/danRer11
DCD012785DT: BIGWIG GRCz11/danRer11
DCD012786DT: PDF GRCz11/danRer11
DCD012787DT: LOG GRCz11/danRer11
DCD012788DT: PDF GRCz11/danRer11
DCD012789DT: LOG GRCz11/danRer11
DCD012790DT: BEDGRAPH GRCz11/danRer11
DCD012900DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007043BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years intestine adult
Applied Assay ID Biosample Replicate Assay
DCD002041AA DCD013632BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002411SQ DCD002423TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007967DT: FASTQ
DCD008843DT: BIGWIG GRCz10/danRer10
DCD009360DT: LOG GRCz10/danRer10
DCD009362DT: TSV GRCz10/danRer10
DCD009363DT: TSV GRCz10/danRer10
DCD009364DT: BEDGRAPH GRCz10/danRer10
DCD009365DT: BEDGRAPH GRCz10/danRer10
DCD009366DT: BEDGRAPH GRCz10/danRer10
DCD009368DT: PDF GRCz10/danRer10
DCD009369DT: LOG GRCz10/danRer10
DCD009370DT: PDF GRCz10/danRer10
DCD009371DT: BEDGRAPH GRCz10/danRer10
DCD009372DT: LOG GRCz10/danRer10
DCD009401DT: BAM GRCz10/danRer10
DCD012791DT: LOG GRCz11/danRer11
DCD012792DT: TSV GRCz11/danRer11
DCD012793DT: TSV GRCz11/danRer11
DCD012794DT: BEDGRAPH GRCz11/danRer11
DCD012796DT: BIGWIG GRCz11/danRer11
DCD012797DT: PDF GRCz11/danRer11
DCD012798DT: LOG GRCz11/danRer11
DCD012799DT: PDF GRCz11/danRer11
DCD012800DT: LOG GRCz11/danRer11
DCD012801DT: BEDGRAPH GRCz11/danRer11
DCD012823DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007044BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years early embryonic cell adult
Applied Assay ID Biosample Replicate Assay
DCD002042AA DCD013633BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002412SQ DCD002424TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007968DT: FASTQ
DCD008806DT: BIGWIG GRCz10/danRer10
DCD009467DT: LOG GRCz10/danRer10
DCD009468DT: TSV GRCz10/danRer10
DCD009469DT: TSV GRCz10/danRer10
DCD009471DT: BEDGRAPH GRCz10/danRer10
DCD009473DT: BEDGRAPH GRCz10/danRer10
DCD009474DT: PDF GRCz10/danRer10
DCD009475DT: BEDGRAPH GRCz10/danRer10
DCD009476DT: LOG GRCz10/danRer10
DCD009477DT: BEDGRAPH GRCz10/danRer10
DCD009478DT: LOG GRCz10/danRer10
DCD009479DT: PDF GRCz10/danRer10
DCD009518DT: BAM GRCz10/danRer10
DCD012802DT: LOG GRCz11/danRer11
DCD012803DT: TSV GRCz11/danRer11
DCD012804DT: TSV GRCz11/danRer11
DCD012806DT: BEDGRAPH GRCz11/danRer11
DCD012807DT: BIGWIG GRCz11/danRer11
DCD012808DT: PDF GRCz11/danRer11
DCD012809DT: LOG GRCz11/danRer11
DCD012810DT: PDF GRCz11/danRer11
DCD012811DT: LOG GRCz11/danRer11
DCD012812DT: BEDGRAPH GRCz11/danRer11
DCD012873DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007045BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years unfertilized egg adult
Applied Assay ID Biosample Replicate Assay
DCD002043AA DCD013634BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002413SQ DCD002425TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007969DT: FASTQ
DCD008763DT: BIGWIG GRCz10/danRer10
DCD010308DT: LOG GRCz10/danRer10
DCD010309DT: TSV GRCz10/danRer10
DCD010310DT: TSV GRCz10/danRer10
DCD010311DT: BEDGRAPH GRCz10/danRer10
DCD010313DT: BEDGRAPH GRCz10/danRer10
DCD010314DT: BEDGRAPH GRCz10/danRer10
DCD010315DT: PDF GRCz10/danRer10
DCD010316DT: LOG GRCz10/danRer10
DCD010317DT: PDF GRCz10/danRer10
DCD010318DT: BEDGRAPH GRCz10/danRer10
DCD010319DT: LOG GRCz10/danRer10
DCD010338DT: BAM GRCz10/danRer10
DCD012813DT: LOG GRCz11/danRer11
DCD012814DT: TSV GRCz11/danRer11
DCD012815DT: TSV GRCz11/danRer11
DCD012816DT: BEDGRAPH GRCz11/danRer11
DCD012817DT: BEDGRAPH GRCz11/danRer11
DCD012818DT: BIGWIG GRCz11/danRer11
DCD012819DT: PDF GRCz11/danRer11
DCD012820DT: LOG GRCz11/danRer11
DCD012821DT: PDF GRCz11/danRer11
DCD012822DT: LOG GRCz11/danRer11
DCD012827DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007046BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years ovary adult
Applied Assay ID Biosample Replicate Assay
DCD002044AA DCD013635BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002414SQ DCD002426TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007970DT: FASTQ
DCD008826DT: BIGWIG GRCz10/danRer10
DCD009624DT: LOG GRCz10/danRer10
DCD009625DT: TSV GRCz10/danRer10
DCD009627DT: TSV GRCz10/danRer10
DCD009629DT: BEDGRAPH GRCz10/danRer10
DCD009630DT: BEDGRAPH GRCz10/danRer10
DCD009631DT: BEDGRAPH GRCz10/danRer10
DCD009632DT: BEDGRAPH GRCz10/danRer10
DCD009633DT: LOG GRCz10/danRer10
DCD009634DT: LOG GRCz10/danRer10
DCD009635DT: PDF GRCz10/danRer10
DCD009636DT: PDF GRCz10/danRer10
DCD009647DT: BAM GRCz10/danRer10
DCD012824DT: LOG GRCz11/danRer11
DCD012825DT: TSV GRCz11/danRer11
DCD012826DT: TSV GRCz11/danRer11
DCD012828DT: BEDGRAPH GRCz11/danRer11
DCD012829DT: BIGWIG GRCz11/danRer11
DCD012830DT: PDF GRCz11/danRer11
DCD012831DT: LOG GRCz11/danRer11
DCD012832DT: PDF GRCz11/danRer11
DCD012833DT: LOG GRCz11/danRer11
DCD012834DT: BEDGRAPH GRCz11/danRer11
DCD012839DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007047BS DCD000382SR tissue Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes AB 90 Days-2 Years testis adult
Applied Assay ID Biosample Replicate Assay
DCD002045AA DCD013636BR RNA-seq_Bobe_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Sequencing Date
DCD002415SQ DCD002427TR Bobe lab, Laboratoire de Physiologie et Genomique des Poissons, INRA, Rennes Illumina HiSeq 2000 TruSeq RNA sample preparation kit reverse 05/02/2017
DCD007971DT: FASTQ
DCD008801DT: BIGWIG GRCz10/danRer10
DCD009239DT: LOG GRCz10/danRer10
DCD009240DT: TSV GRCz10/danRer10
DCD009241DT: TSV GRCz10/danRer10
DCD009242DT: BEDGRAPH GRCz10/danRer10
DCD009243DT: BEDGRAPH GRCz10/danRer10
DCD009245DT: BEDGRAPH GRCz10/danRer10
DCD009246DT: PDF GRCz10/danRer10
DCD009247DT: LOG GRCz10/danRer10
DCD009248DT: PDF GRCz10/danRer10
DCD009249DT: BEDGRAPH GRCz10/danRer10
DCD009250DT: LOG GRCz10/danRer10
DCD009304DT: BAM GRCz10/danRer10
DCD012835DT: LOG GRCz11/danRer11
DCD012836DT: TSV GRCz11/danRer11
DCD012837DT: TSV GRCz11/danRer11
DCD012840DT: BIGWIG GRCz11/danRer11
DCD012841DT: PDF GRCz11/danRer11
DCD012842DT: LOG GRCz11/danRer11
DCD012843DT: PDF GRCz11/danRer11
DCD012844DT: LOG GRCz11/danRer11
DCD012845DT: BEDGRAPH GRCz11/danRer11
DCD012850DT: BEDGRAPH GRCz11/danRer11
DCD012970DT: BAM GRCz11/danRer11