Series Summary for DCD000392SR

RNA-seq of brain for 4 different strains: Neurotranscriptome profiles of four zebrafish strains

Survey

10.1016/j.gdata.2015.06.004

GSE61108

Behavioral displays or physiological responses are often influenced by intrinsic and extrinsic mechanisms in the context of the organism's evolutionary history. Understanding differences in transcriptome profiles can give insight into adaptive or pathological responses. We utilize high throughput sequencing (RNA-sequencing) to characterize the neurotranscriptome profiles in both males and females across four strains of zebrafish (Danio rerio). Strains varied by previously documented differences in stress and anxiety-like behavioral responses, and generations removed from wild-caught individuals. Here we describe detailed methodologies and quality controls in generating the raw RNA-sequencing reads that are publically available in NCBI's Gene Expression Omnibus database (GSE61108).

True

mickael.dong

Jan. 12, 2018, 3:45 a.m.

Oct. 23, 2018, 1:58 a.m.

Assays

Biosample ID Series biosample_type biosample_lab genetic_background
DCD007070BS DCD000392SR tissue Wong lab, University of Nebraska Omaha AB
Applied Assay ID Biosample Replicate Assay
DCD002092AA DCD013683BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002476SQ DCD002488TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008028DT: FASTQ
DCD008828DT: BIGWIG GRCz10/danRer10
DCD009551DT: LOG GRCz10/danRer10
DCD009553DT: TSV GRCz10/danRer10
DCD009554DT: TSV GRCz10/danRer10
DCD009555DT: BEDGRAPH GRCz10/danRer10
DCD009556DT: BEDGRAPH GRCz10/danRer10
DCD009557DT: BEDGRAPH GRCz10/danRer10
DCD009558DT: BEDGRAPH GRCz10/danRer10
DCD009559DT: PDF GRCz10/danRer10
DCD009560DT: LOG GRCz10/danRer10
DCD009561DT: PDF GRCz10/danRer10
DCD009563DT: LOG GRCz10/danRer10
DCD009565DT: BAM GRCz10/danRer10
DCD015911DT: LOG GRCz11/danRer11
DCD015912DT: TSV GRCz11/danRer11
DCD015914DT: TSV GRCz11/danRer11
DCD015916DT: BIGWIG GRCz11/danRer11
DCD015917DT: PDF GRCz11/danRer11
DCD015918DT: LOG GRCz11/danRer11
DCD015919DT: PDF GRCz11/danRer11
DCD015920DT: LOG GRCz11/danRer11
DCD015925DT: BEDGRAPH GRCz11/danRer11
DCD015926DT: BEDGRAPH GRCz11/danRer11
DCD015959DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002093AA DCD013684BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002477SQ DCD002489TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008029DT: FASTQ
DCD008823DT: BIGWIG GRCz10/danRer10
DCD009660DT: LOG GRCz10/danRer10
DCD009663DT: TSV GRCz10/danRer10
DCD009664DT: TSV GRCz10/danRer10
DCD009665DT: BEDGRAPH GRCz10/danRer10
DCD009666DT: BEDGRAPH GRCz10/danRer10
DCD009667DT: LOG GRCz10/danRer10
DCD009668DT: PDF GRCz10/danRer10
DCD009669DT: BEDGRAPH GRCz10/danRer10
DCD009670DT: BEDGRAPH GRCz10/danRer10
DCD009673DT: LOG GRCz10/danRer10
DCD009674DT: PDF GRCz10/danRer10
DCD009675DT: BAM GRCz10/danRer10
DCD015922DT: LOG GRCz11/danRer11
DCD015923DT: TSV GRCz11/danRer11
DCD015924DT: TSV GRCz11/danRer11
DCD015927DT: BIGWIG GRCz11/danRer11
DCD015928DT: PDF GRCz11/danRer11
DCD015929DT: LOG GRCz11/danRer11
DCD015930DT: PDF GRCz11/danRer11
DCD015931DT: LOG GRCz11/danRer11
DCD015932DT: BEDGRAPH GRCz11/danRer11
DCD015934DT: BEDGRAPH GRCz11/danRer11
DCD015957DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007071BS DCD000392SR tissue Wong lab, University of Nebraska Omaha AB
Applied Assay ID Biosample Replicate Assay
DCD002094AA DCD013685BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002478SQ DCD002490TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008030DT: FASTQ
DCD008814DT: BIGWIG GRCz10/danRer10
DCD009698DT: LOG GRCz10/danRer10
DCD009699DT: TSV GRCz10/danRer10
DCD009700DT: TSV GRCz10/danRer10
DCD009701DT: BEDGRAPH GRCz10/danRer10
DCD009702DT: PDF GRCz10/danRer10
DCD009703DT: LOG GRCz10/danRer10
DCD009704DT: BEDGRAPH GRCz10/danRer10
DCD009705DT: BEDGRAPH GRCz10/danRer10
DCD009706DT: PDF GRCz10/danRer10
DCD009707DT: BEDGRAPH GRCz10/danRer10
DCD009709DT: LOG GRCz10/danRer10
DCD009713DT: BAM GRCz10/danRer10
DCD015933DT: LOG GRCz11/danRer11
DCD015936DT: TSV GRCz11/danRer11
DCD015937DT: TSV GRCz11/danRer11
DCD015938DT: BIGWIG GRCz11/danRer11
DCD015939DT: PDF GRCz11/danRer11
DCD015940DT: LOG GRCz11/danRer11
DCD015941DT: PDF GRCz11/danRer11
DCD015942DT: LOG GRCz11/danRer11
DCD015943DT: BEDGRAPH GRCz11/danRer11
DCD015947DT: BEDGRAPH GRCz11/danRer11
DCD015970DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002095AA DCD013686BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002479SQ DCD002491TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008031DT: FASTQ
DCD008821DT: BIGWIG GRCz10/danRer10
DCD009771DT: LOG GRCz10/danRer10
DCD009772DT: TSV GRCz10/danRer10
DCD009773DT: TSV GRCz10/danRer10
DCD009774DT: BEDGRAPH GRCz10/danRer10
DCD009775DT: BEDGRAPH GRCz10/danRer10
DCD009776DT: BAM GRCz10/danRer10
DCD009777DT: BEDGRAPH GRCz10/danRer10
DCD009778DT: PDF GRCz10/danRer10
DCD009779DT: LOG GRCz10/danRer10
DCD009780DT: LOG GRCz10/danRer10
DCD009781DT: PDF GRCz10/danRer10
DCD009782DT: BEDGRAPH GRCz10/danRer10
DCD015944DT: LOG GRCz11/danRer11
DCD015945DT: TSV GRCz11/danRer11
DCD015946DT: TSV GRCz11/danRer11
DCD015948DT: BEDGRAPH GRCz11/danRer11
DCD015949DT: BIGWIG GRCz11/danRer11
DCD015950DT: PDF GRCz11/danRer11
DCD015951DT: LOG GRCz11/danRer11
DCD015952DT: PDF GRCz11/danRer11
DCD015953DT: LOG GRCz11/danRer11
DCD015954DT: BEDGRAPH GRCz11/danRer11
DCD015965DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007072BS DCD000392SR tissue Wong lab, University of Nebraska Omaha SH
Applied Assay ID Biosample Replicate Assay
DCD002096AA DCD013687BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002480SQ DCD002492TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008032DT: FASTQ
DCD008809DT: BIGWIG GRCz10/danRer10
DCD009602DT: LOG GRCz10/danRer10
DCD009604DT: TSV GRCz10/danRer10
DCD009605DT: TSV GRCz10/danRer10
DCD009606DT: PDF GRCz10/danRer10
DCD009607DT: LOG GRCz10/danRer10
DCD009608DT: BEDGRAPH GRCz10/danRer10
DCD009609DT: BEDGRAPH GRCz10/danRer10
DCD009610DT: BEDGRAPH GRCz10/danRer10
DCD009611DT: BEDGRAPH GRCz10/danRer10
DCD009612DT: LOG GRCz10/danRer10
DCD009613DT: PDF GRCz10/danRer10
DCD009628DT: BAM GRCz10/danRer10
DCD015955DT: LOG GRCz11/danRer11
DCD015956DT: TSV GRCz11/danRer11
DCD015958DT: TSV GRCz11/danRer11
DCD015960DT: BIGWIG GRCz11/danRer11
DCD015961DT: PDF GRCz11/danRer11
DCD015962DT: LOG GRCz11/danRer11
DCD015963DT: PDF GRCz11/danRer11
DCD015964DT: LOG GRCz11/danRer11
DCD015969DT: BEDGRAPH GRCz11/danRer11
DCD015971DT: BEDGRAPH GRCz11/danRer11
DCD016002DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002097AA DCD013688BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002481SQ DCD002493TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008033DT: FASTQ
DCD008815DT: BIGWIG GRCz10/danRer10
DCD009686DT: TSV GRCz10/danRer10
DCD009687DT: TSV GRCz10/danRer10
DCD009688DT: LOG GRCz10/danRer10
DCD009689DT: BEDGRAPH GRCz10/danRer10
DCD009691DT: BEDGRAPH GRCz10/danRer10
DCD009692DT: BEDGRAPH GRCz10/danRer10
DCD009693DT: BEDGRAPH GRCz10/danRer10
DCD009694DT: PDF GRCz10/danRer10
DCD009695DT: LOG GRCz10/danRer10
DCD009696DT: LOG GRCz10/danRer10
DCD009697DT: PDF GRCz10/danRer10
DCD009708DT: BAM GRCz10/danRer10
DCD015966DT: LOG GRCz11/danRer11
DCD015967DT: TSV GRCz11/danRer11
DCD015968DT: TSV GRCz11/danRer11
DCD015972DT: PDF GRCz11/danRer11
DCD015973DT: LOG GRCz11/danRer11
DCD015974DT: PDF GRCz11/danRer11
DCD015975DT: LOG GRCz11/danRer11
DCD015976DT: BIGWIG GRCz11/danRer11
DCD015980DT: BEDGRAPH GRCz11/danRer11
DCD015981DT: BEDGRAPH GRCz11/danRer11
DCD016009DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007073BS DCD000392SR tissue Wong lab, University of Nebraska Omaha SH
Applied Assay ID Biosample Replicate Assay
DCD002098AA DCD013689BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002482SQ DCD002494TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008034DT: FASTQ
DCD008799DT: BIGWIG GRCz10/danRer10
DCD009672DT: LOG GRCz10/danRer10
DCD009676DT: TSV GRCz10/danRer10
DCD009677DT: TSV GRCz10/danRer10
DCD009678DT: PDF GRCz10/danRer10
DCD009679DT: BEDGRAPH GRCz10/danRer10
DCD009680DT: PDF GRCz10/danRer10
DCD009681DT: LOG GRCz10/danRer10
DCD009682DT: BEDGRAPH GRCz10/danRer10
DCD009683DT: BEDGRAPH GRCz10/danRer10
DCD009684DT: BEDGRAPH GRCz10/danRer10
DCD009685DT: LOG GRCz10/danRer10
DCD009690DT: BAM GRCz10/danRer10
DCD015977DT: LOG GRCz11/danRer11
DCD015978DT: TSV GRCz11/danRer11
DCD015979DT: TSV GRCz11/danRer11
DCD015982DT: BEDGRAPH GRCz11/danRer11
DCD015983DT: PDF GRCz11/danRer11
DCD015984DT: LOG GRCz11/danRer11
DCD015985DT: PDF GRCz11/danRer11
DCD015986DT: LOG GRCz11/danRer11
DCD015987DT: BIGWIG GRCz11/danRer11
DCD015991DT: BEDGRAPH GRCz11/danRer11
DCD016005DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002099AA DCD013690BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002483SQ DCD002495TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008035DT: FASTQ
DCD008798DT: BIGWIG GRCz10/danRer10
DCD009915DT: LOG GRCz10/danRer10
DCD009916DT: TSV GRCz10/danRer10
DCD009917DT: TSV GRCz10/danRer10
DCD009918DT: PDF GRCz10/danRer10
DCD009919DT: BEDGRAPH GRCz10/danRer10
DCD009920DT: LOG GRCz10/danRer10
DCD009921DT: BEDGRAPH GRCz10/danRer10
DCD009922DT: PDF GRCz10/danRer10
DCD009924DT: LOG GRCz10/danRer10
DCD009925DT: BEDGRAPH GRCz10/danRer10
DCD009926DT: BEDGRAPH GRCz10/danRer10
DCD009977DT: BAM GRCz10/danRer10
DCD015988DT: LOG GRCz11/danRer11
DCD015989DT: TSV GRCz11/danRer11
DCD015990DT: TSV GRCz11/danRer11
DCD015992DT: BEDGRAPH GRCz11/danRer11
DCD015993DT: BIGWIG GRCz11/danRer11
DCD015994DT: PDF GRCz11/danRer11
DCD015995DT: LOG GRCz11/danRer11
DCD015996DT: PDF GRCz11/danRer11
DCD015997DT: LOG GRCz11/danRer11
DCD015998DT: BEDGRAPH GRCz11/danRer11
DCD016015DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007074BS DCD000392SR tissue Wong lab, University of Nebraska Omaha LSB
Applied Assay ID Biosample Replicate Assay
DCD002100AA DCD013691BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002484SQ DCD002496TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008036DT: FASTQ
DCD008813DT: BIGWIG GRCz10/danRer10
DCD009829DT: LOG GRCz10/danRer10
DCD009831DT: TSV GRCz10/danRer10
DCD009833DT: TSV GRCz10/danRer10
DCD009834DT: BEDGRAPH GRCz10/danRer10
DCD009835DT: BAM GRCz10/danRer10
DCD009836DT: BEDGRAPH GRCz10/danRer10
DCD009837DT: LOG GRCz10/danRer10
DCD009838DT: PDF GRCz10/danRer10
DCD009839DT: PDF GRCz10/danRer10
DCD009840DT: BEDGRAPH GRCz10/danRer10
DCD009841DT: BEDGRAPH GRCz10/danRer10
DCD009842DT: LOG GRCz10/danRer10
DCD015999DT: LOG GRCz11/danRer11
DCD016000DT: TSV GRCz11/danRer11
DCD016001DT: TSV GRCz11/danRer11
DCD016003DT: BEDGRAPH GRCz11/danRer11
DCD016004DT: BIGWIG GRCz11/danRer11
DCD016006DT: PDF GRCz11/danRer11
DCD016007DT: LOG GRCz11/danRer11
DCD016008DT: PDF GRCz11/danRer11
DCD016010DT: LOG GRCz11/danRer11
DCD016011DT: BEDGRAPH GRCz11/danRer11
DCD016035DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002101AA DCD013692BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002485SQ DCD002497TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008037DT: FASTQ
DCD008817DT: BIGWIG GRCz10/danRer10
DCD009795DT: LOG GRCz10/danRer10
DCD009796DT: TSV GRCz10/danRer10
DCD009797DT: TSV GRCz10/danRer10
DCD009798DT: BEDGRAPH GRCz10/danRer10
DCD009799DT: BAM GRCz10/danRer10
DCD009800DT: BEDGRAPH GRCz10/danRer10
DCD009801DT: BEDGRAPH GRCz10/danRer10
DCD009802DT: BEDGRAPH GRCz10/danRer10
DCD009803DT: PDF GRCz10/danRer10
DCD009804DT: LOG GRCz10/danRer10
DCD009805DT: LOG GRCz10/danRer10
DCD009806DT: PDF GRCz10/danRer10
DCD016012DT: LOG GRCz11/danRer11
DCD016013DT: TSV GRCz11/danRer11
DCD016014DT: TSV GRCz11/danRer11
DCD016016DT: PDF GRCz11/danRer11
DCD016017DT: LOG GRCz11/danRer11
DCD016018DT: BIGWIG GRCz11/danRer11
DCD016019DT: LOG GRCz11/danRer11
DCD016020DT: PDF GRCz11/danRer11
DCD016024DT: BEDGRAPH GRCz11/danRer11
DCD016025DT: BEDGRAPH GRCz11/danRer11
DCD016053DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007075BS DCD000392SR tissue Wong lab, University of Nebraska Omaha LSB
Applied Assay ID Biosample Replicate Assay
DCD002102AA DCD013693BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002486SQ DCD002498TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008038DT: FASTQ
DCD008818DT: BIGWIG GRCz10/danRer10
DCD009710DT: LOG GRCz10/danRer10
DCD009711DT: TSV GRCz10/danRer10
DCD009712DT: TSV GRCz10/danRer10
DCD009714DT: PDF GRCz10/danRer10
DCD009715DT: BEDGRAPH GRCz10/danRer10
DCD009716DT: BEDGRAPH GRCz10/danRer10
DCD009717DT: PDF GRCz10/danRer10
DCD009718DT: LOG GRCz10/danRer10
DCD009719DT: BEDGRAPH GRCz10/danRer10
DCD009720DT: LOG GRCz10/danRer10
DCD009721DT: BEDGRAPH GRCz10/danRer10
DCD009725DT: BAM GRCz10/danRer10
DCD016021DT: LOG GRCz11/danRer11
DCD016022DT: TSV GRCz11/danRer11
DCD016023DT: TSV GRCz11/danRer11
DCD016026DT: BIGWIG GRCz11/danRer11
DCD016027DT: BEDGRAPH GRCz11/danRer11
DCD016028DT: LOG GRCz11/danRer11
DCD016029DT: PDF GRCz11/danRer11
DCD016030DT: LOG GRCz11/danRer11
DCD016031DT: PDF GRCz11/danRer11
DCD016036DT: BEDGRAPH GRCz11/danRer11
DCD016058DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002103AA DCD013694BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002487SQ DCD002499TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008039DT: FASTQ
DCD008808DT: BIGWIG GRCz10/danRer10
DCD009756DT: LOG GRCz10/danRer10
DCD009757DT: TSV GRCz10/danRer10
DCD009758DT: TSV GRCz10/danRer10
DCD009759DT: BEDGRAPH GRCz10/danRer10
DCD009760DT: BEDGRAPH GRCz10/danRer10
DCD009763DT: PDF GRCz10/danRer10
DCD009764DT: BEDGRAPH GRCz10/danRer10
DCD009765DT: BEDGRAPH GRCz10/danRer10
DCD009766DT: LOG GRCz10/danRer10
DCD009767DT: BAM GRCz10/danRer10
DCD009768DT: LOG GRCz10/danRer10
DCD009769DT: PDF GRCz10/danRer10
DCD016032DT: LOG GRCz11/danRer11
DCD016033DT: TSV GRCz11/danRer11
DCD016034DT: TSV GRCz11/danRer11
DCD016037DT: BIGWIG GRCz11/danRer11
DCD016038DT: PDF GRCz11/danRer11
DCD016039DT: LOG GRCz11/danRer11
DCD016040DT: PDF GRCz11/danRer11
DCD016041DT: LOG GRCz11/danRer11
DCD016042DT: BEDGRAPH GRCz11/danRer11
DCD016046DT: BEDGRAPH GRCz11/danRer11
DCD016069DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007076BS DCD000392SR tissue Wong lab, University of Nebraska Omaha HSB
Applied Assay ID Biosample Replicate Assay
DCD002104AA DCD013695BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002488SQ DCD002500TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008040DT: FASTQ
DCD008812DT: BIGWIG GRCz10/danRer10
DCD009743DT: LOG GRCz10/danRer10
DCD009746DT: TSV GRCz10/danRer10
DCD009747DT: TSV GRCz10/danRer10
DCD009748DT: BEDGRAPH GRCz10/danRer10
DCD009749DT: BEDGRAPH GRCz10/danRer10
DCD009750DT: BEDGRAPH GRCz10/danRer10
DCD009751DT: PDF GRCz10/danRer10
DCD009752DT: LOG GRCz10/danRer10
DCD009753DT: PDF GRCz10/danRer10
DCD009754DT: BEDGRAPH GRCz10/danRer10
DCD009755DT: LOG GRCz10/danRer10
DCD009762DT: BAM GRCz10/danRer10
DCD016043DT: LOG GRCz11/danRer11
DCD016044DT: TSV GRCz11/danRer11
DCD016045DT: TSV GRCz11/danRer11
DCD016047DT: BEDGRAPH GRCz11/danRer11
DCD016048DT: BIGWIG GRCz11/danRer11
DCD016049DT: PDF GRCz11/danRer11
DCD016050DT: LOG GRCz11/danRer11
DCD016051DT: PDF GRCz11/danRer11
DCD016052DT: LOG GRCz11/danRer11
DCD016057DT: BEDGRAPH GRCz11/danRer11
DCD016086DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002105AA DCD013696BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002489SQ DCD002501TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008041DT: FASTQ
DCD008797DT: BIGWIG GRCz10/danRer10
DCD009923DT: LOG GRCz10/danRer10
DCD009927DT: TSV GRCz10/danRer10
DCD009928DT: TSV GRCz10/danRer10
DCD009929DT: BEDGRAPH GRCz10/danRer10
DCD009930DT: BEDGRAPH GRCz10/danRer10
DCD009931DT: LOG GRCz10/danRer10
DCD009932DT: PDF GRCz10/danRer10
DCD009933DT: LOG GRCz10/danRer10
DCD009934DT: PDF GRCz10/danRer10
DCD009935DT: BEDGRAPH GRCz10/danRer10
DCD009938DT: BEDGRAPH GRCz10/danRer10
DCD009971DT: BAM GRCz10/danRer10
DCD016054DT: LOG GRCz11/danRer11
DCD016055DT: TSV GRCz11/danRer11
DCD016056DT: TSV GRCz11/danRer11
DCD016059DT: BIGWIG GRCz11/danRer11
DCD016060DT: PDF GRCz11/danRer11
DCD016061DT: LOG GRCz11/danRer11
DCD016062DT: PDF GRCz11/danRer11
DCD016063DT: LOG GRCz11/danRer11
DCD016064DT: BEDGRAPH GRCz11/danRer11
DCD016067DT: BEDGRAPH GRCz11/danRer11
DCD016076DT: BAM GRCz11/danRer11
Biosample ID Series biosample_type biosample_lab genetic_background
DCD007077BS DCD000392SR tissue Wong lab, University of Nebraska Omaha HSB
Applied Assay ID Biosample Replicate Assay
DCD002106AA DCD013697BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002490SQ DCD002502TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008042DT: FASTQ
DCD008810DT: BIGWIG GRCz10/danRer10
DCD009722DT: LOG GRCz10/danRer10
DCD009723DT: TSV GRCz10/danRer10
DCD009724DT: TSV GRCz10/danRer10
DCD009726DT: BEDGRAPH GRCz10/danRer10
DCD009727DT: BEDGRAPH GRCz10/danRer10
DCD009728DT: BEDGRAPH GRCz10/danRer10
DCD009729DT: BEDGRAPH GRCz10/danRer10
DCD009730DT: LOG GRCz10/danRer10
DCD009731DT: LOG GRCz10/danRer10
DCD009732DT: PDF GRCz10/danRer10
DCD009733DT: PDF GRCz10/danRer10
DCD009761DT: BAM GRCz10/danRer10
DCD016065DT: LOG GRCz11/danRer11
DCD016066DT: TSV GRCz11/danRer11
DCD016068DT: TSV GRCz11/danRer11
DCD016070DT: BIGWIG GRCz11/danRer11
DCD016071DT: PDF GRCz11/danRer11
DCD016072DT: LOG GRCz11/danRer11
DCD016073DT: PDF GRCz11/danRer11
DCD016074DT: LOG GRCz11/danRer11
DCD016075DT: BEDGRAPH GRCz11/danRer11
DCD016080DT: BEDGRAPH GRCz11/danRer11
DCD016090DT: BAM GRCz11/danRer11
Applied Assay ID Biosample Replicate Assay
DCD002107AA DCD013698BR RNA-seq_Wong_lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Sequencing Date
DCD002491SQ DCD002503TR Wong lab, University of Nebraska Omaha Illumina GAIIx 09/04/2014
DCD008043DT: FASTQ
DCD008794DT: BIGWIG GRCz10/danRer10
DCD009973DT: LOG GRCz10/danRer10
DCD009975DT: TSV GRCz10/danRer10
DCD009976DT: TSV GRCz10/danRer10
DCD009978DT: PDF GRCz10/danRer10
DCD009979DT: LOG GRCz10/danRer10
DCD009980DT: BEDGRAPH GRCz10/danRer10
DCD009981DT: LOG GRCz10/danRer10
DCD009982DT: PDF GRCz10/danRer10
DCD009983DT: BEDGRAPH GRCz10/danRer10
DCD009985DT: BEDGRAPH GRCz10/danRer10
DCD009986DT: BEDGRAPH GRCz10/danRer10
DCD009998DT: BAM GRCz10/danRer10
DCD016077DT: LOG GRCz11/danRer11
DCD016078DT: TSV GRCz11/danRer11
DCD016079DT: TSV GRCz11/danRer11
DCD016081DT: BIGWIG GRCz11/danRer11
DCD016082DT: PDF GRCz11/danRer11
DCD016083DT: LOG GRCz11/danRer11
DCD016084DT: PDF GRCz11/danRer11
DCD016085DT: LOG GRCz11/danRer11
DCD016087DT: BEDGRAPH GRCz11/danRer11
DCD016088DT: BEDGRAPH GRCz11/danRer11
DCD016089DT: BAM GRCz11/danRer11