RNAseq from mature ductal cells from nkx6.1:GFP zebrafish lines
Survey
10.1186/s12915-015-0179-4
PRJEB10137
In contrast to mammals, the zebrafish has the remarkable capacity to regenerate its pancreatic beta cells very efficiently. Understanding the mechanisms of regeneration in the zebrafish and the differences with mammals will be fundamental to discovering molecules able to stimulate the regeneration process in mammals. To identify the pancreatic cells able to give rise to new beta cells in the zebrafish, we generated new transgenic lines allowing the tracing of multipotent pancreatic progenitors and endocrine precursors.
True
mickael.dong
Feb. 23, 2018, 7:06 a.m.
Feb. 23, 2018, 7:33 a.m.
| Biosample ID | Series | biosample_type | biosample_lab | genetic_background | stage | Controlled By | anatomical_term | Treatment | Hours Post Fertilization | Mutation Description |
|---|---|---|---|---|---|---|---|---|---|---|
| DCD007100BS | DCD000397SR | tissue | Peers Lab, University of Liege | AB | 90 Days-2 Years | pancreatic ductal cell | — | adult | — |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002172AA | DCD013763BR | RNA-seq_Peers_Lab_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002548SQ | DCD002574TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | TruSeq Nano DNA kit or Nextera XT DNA | ✔ | unstranded | 08/17/2015 |
| Applied Assay ID | Biosample Replicate | Assay |
|---|---|---|
| DCD002173AA | DCD013764BR | RNA-seq_Peers_Lab_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Sequencing Date |
|---|---|---|---|---|---|---|---|---|
| DCD002549SQ | DCD002575TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | TruSeq Nano DNA kit or Nextera XT DNA | ✔ | unstranded | 08/17/2015 |
| Applied Assay ID | Biosample Replicate | Assay | Controlled By |
|---|---|---|---|
| DCD002174AA | DCD013765BR | RNA-seq_Peers_Lab_0006AS |
| Sequencing ID | Technical Replicate | Sequencing Lab | Platform | Instrument | Chemistry Version | Paired End | Strand | Maximum Read Length | Sequencing Date |
|---|---|---|---|---|---|---|---|---|---|
| DCD002550SQ | DCD002576TR | Peers Lab, University of Liege | Illumina | HiSeq 2000 | TruSeq Nano DNA kit or Nextera XT DNA | ✔ | unstranded | — | 08/17/2015 |