Series Summary for DCD000416SR

Transcriptome-wide analysis of small RNA expression in early zebrafish development

Survey

10.1261/rna.029090.111

GSE27722

temporal expression patterns for small noncoding RNAs over 4 stages of development Overall design: small noncoding RNA-seq samples per developmental stage (1 x 256-cell embryo, 2 replicates x sphere embryo, 1 x shield embryo, 1 x 1 day post fertilization embryo).

True

irene.stevens

July 9, 2018, 1:25 a.m.

July 9, 2018, 1:27 a.m.

Assays

small-RNA-seq

Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007157BS DCD000416SR whole organism Wei Lab, Vanderbilt University AB Prim-5 24
Applied Assay ID Biosample Replicate Assay
DCD002387AA DCD013904BR small-RNA-seq_Wei_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD002765SQ DCD002791TR Wei Lab, Vanderbilt University Illumina GAIIx unstranded 30 03/07/2011
DCD010788DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007158BS DCD000416SR whole organism Wei Lab, Vanderbilt University AB Sphere 4
Applied Assay ID Biosample Replicate Assay
DCD002388AA DCD013901BR small-RNA-seq_Wei_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD002764SQ DCD002790TR Wei Lab, Vanderbilt University Illumina GAIIx unstranded 30 03/07/2011
DCD010791DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD002766SQ DCD002789TR Wei Lab, Vanderbilt University Illumina GAIIx unstranded 30 03/07/2011
DCD010790DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Hours Post Fertilization
DCD007159BS DCD000416SR whole organism Wei Lab, Vanderbilt University AB Shield 6
Applied Assay ID Biosample Replicate Assay
DCD002389AA DCD013902BR small-RNA-seq_Wei_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Strand Maximum Read Length Sequencing Date
DCD002767SQ DCD002793TR Wei Lab, Vanderbilt University Illumina GAIIx unstranded 30 03/07/2011
DCD010789DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD007160BS DCD000416SR whole organism Wei Lab, Vanderbilt University AB 256-cell — — 2.5 —
Applied Assay ID Biosample Replicate Assay Controlled By
DCD002390AA DCD013903BR small-RNA-seq_Wei_Lab_0002AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD002768SQ DCD002792TR Wei Lab, Vanderbilt University Illumina GAIIx — ✘ unstranded 30 03/07/2011
DCD010792DT: FASTQ