DANIO-CODE DCC

Series Summary for DCD000429SR

Expanding the annotation of zebrafish microRNAs based on small RNA sequencing

Series type: Survey

Publication: 10.1016/j.gene.2014.05.036

GEO/SRA ID: SRP039502

Description: miRNA-seq for brain, heart, testis and ovary in adult. Overall design: 2 males were sampled for brain, heart, and testes to make six libraries, from two females, ovaries were sampled and two libraries

Is public: True

Added by User: irene.stevens

Date Added: July 20, 2018, 3:06 a.m.

Series Last Edited: July 20, 2018, 3:28 a.m.

Assays

miRNA-seq

miRNA-seq_Postlethwait_Lab_0001AS

Biosample ID	Series	biosample_type	biosample_lab	genetic_background	stage	Hours Post Fertilization
DCD007253BS	DCD000429SR	tissue	Postlethwait Lab, Institute of Neuroscience, University of Oregon	AB	90 Days-2 Years	adult

Applied Assay ID	Biosample Replicate	Assay
DCD002661AA	DCD014029BR	miRNA-seq_Postlethwait_Lab_0001AS

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003048SQ	DCD003097TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011046DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003054SQ	DCD003087TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011045DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003060SQ	DCD003086TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011044DT: FASTQ

Applied Assay ID	Biosample Replicate	Assay
DCD002659AA	DCD014032BR	miRNA-seq_Postlethwait_Lab_0001AS

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003066SQ	DCD003092TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011042DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003057SQ	DCD003091TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011043DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003053SQ	DCD003080TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011041DT: FASTQ

Biosample ID	Series	biosample_type	biosample_lab	genetic_background	stage	Hours Post Fertilization
DCD007254BS	DCD000429SR	tissue	Postlethwait Lab, Institute of Neuroscience, University of Oregon	AB	90 Days-2 Years	adult

Applied Assay ID	Biosample Replicate	Assay
DCD002665AA	DCD014027BR	miRNA-seq_Postlethwait_Lab_0001AS

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003056SQ	DCD003079TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011058DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003058SQ	DCD003075TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011056DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003063SQ	DCD003074TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011057DT: FASTQ

Applied Assay ID	Biosample Replicate	Assay
DCD002662AA	DCD014028BR	miRNA-seq_Postlethwait_Lab_0001AS

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003067SQ	DCD003096TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011055DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003044SQ	DCD003095TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011054DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003061SQ	DCD003094TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011053DT: FASTQ

Biosample ID	Series	biosample_type	biosample_lab	genetic_background	stage	Hours Post Fertilization
DCD007255BS	DCD000429SR	tissue	Postlethwait Lab, Institute of Neuroscience, University of Oregon	AB	90 Days-2 Years	adult

Applied Assay ID	Biosample Replicate	Assay
DCD002660AA	DCD014033BR	miRNA-seq_Postlethwait_Lab_0001AS

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003052SQ	DCD003090TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011049DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003059SQ	DCD003089TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011048DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003050SQ	DCD003088TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011047DT: FASTQ

Applied Assay ID	Biosample Replicate	Assay
DCD002663AA	DCD014034BR	miRNA-seq_Postlethwait_Lab_0001AS

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003045SQ	DCD003083TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011050DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003046SQ	DCD003082TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011051DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003049SQ	DCD003081TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011052DT: FASTQ

Biosample ID	Series	biosample_type	biosample_lab	genetic_background	stage	Hours Post Fertilization
DCD007256BS	DCD000429SR	tissue	Postlethwait Lab, Institute of Neuroscience, University of Oregon	AB	90 Days-2 Years	adult

Applied Assay ID	Biosample Replicate	Assay
DCD002666AA	DCD014030BR	miRNA-seq_Postlethwait_Lab_0001AS

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003062SQ	DCD003093TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011064DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003064SQ	DCD003085TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011062DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003065SQ	DCD003084TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011063DT: FASTQ

Applied Assay ID	Biosample Replicate	Assay
DCD002664AA	DCD014031BR	miRNA-seq_Postlethwait_Lab_0001AS

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003047SQ	DCD003078TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011061DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003051SQ	DCD003077TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011060DT: FASTQ

Sequencing ID	Technical Replicate	Sequencing Lab	Platform	Instrument	Sequencing Date
DCD003055SQ	DCD003076TR	Postlethwait Lab, Institute of Neuroscience, University of Oregon	Illumina	HiSeq 2500	06/05/2015

DCD011059DT: FASTQ