Series Summary for DCD000429SR

Expanding the annotation of zebrafish microRNAs based on small RNA sequencing

Survey

10.1016/j.gene.2014.05.036

SRP039502

miRNA-seq for brain, heart, testis and ovary in adult. Overall design: 2 males were sampled for brain, heart, and testes to make six libraries, from two females, ovaries were sampled and two libraries

True

irene.stevens

July 20, 2018, 3:06 a.m.

July 20, 2018, 3:28 a.m.

Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007253BS DCD000429SR tissue Postlethwait Lab, Institute of Neuroscience, University of Oregon AB 90 Days-2 Years ovary adult
Applied Assay ID Biosample Replicate Assay
DCD002661AA DCD014029BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003048SQ DCD003097TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011046DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003054SQ DCD003087TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011045DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003060SQ DCD003086TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011044DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002659AA DCD014032BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003066SQ DCD003092TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011042DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003057SQ DCD003091TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011043DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003053SQ DCD003080TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011041DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007254BS DCD000429SR tissue Postlethwait Lab, Institute of Neuroscience, University of Oregon AB 90 Days-2 Years heart adult
Applied Assay ID Biosample Replicate Assay
DCD002665AA DCD014027BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003056SQ DCD003079TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011058DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003058SQ DCD003075TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011056DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003063SQ DCD003074TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011057DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002662AA DCD014028BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003067SQ DCD003096TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011055DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003044SQ DCD003095TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011054DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003061SQ DCD003094TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011053DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage anatomical_term Hours Post Fertilization
DCD007255BS DCD000429SR tissue Postlethwait Lab, Institute of Neuroscience, University of Oregon AB 90 Days-2 Years testis adult
Applied Assay ID Biosample Replicate Assay
DCD002660AA DCD014033BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003052SQ DCD003090TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011049DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003059SQ DCD003089TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011048DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003050SQ DCD003088TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011047DT: FASTQ
Applied Assay ID Biosample Replicate Assay
DCD002663AA DCD014034BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003045SQ DCD003083TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011050DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003046SQ DCD003082TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011051DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003049SQ DCD003081TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011052DT: FASTQ
Biosample ID Series biosample_type biosample_lab genetic_background stage Controlled By anatomical_term Treatment Hours Post Fertilization Mutation Description
DCD007256BS DCD000429SR tissue Postlethwait Lab, Institute of Neuroscience, University of Oregon AB 90 Days-2 Years brain — adult —
Applied Assay ID Biosample Replicate Assay
DCD002666AA DCD014030BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003062SQ DCD003093TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011064DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003064SQ DCD003085TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011062DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003065SQ DCD003084TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011063DT: FASTQ
Applied Assay ID Biosample Replicate Assay Controlled By
DCD002664AA DCD014031BR miRNA-seq_Postlethwait_Lab_0001AS
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Paired End Strand Maximum Read Length Sequencing Date
DCD003047SQ DCD003078TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit ✘ forward 50 06/05/2015
DCD011061DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003051SQ DCD003077TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011060DT: FASTQ
Sequencing ID Technical Replicate Sequencing Lab Platform Instrument Chemistry Version Strand Maximum Read Length Sequencing Date
DCD003055SQ DCD003076TR Postlethwait Lab, Institute of Neuroscience, University of Oregon Illumina HiSeq 2500 BiooScientific NEXTflex smallRNA Sequencing Kit forward 50 06/05/2015
DCD011059DT: FASTQ